mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,401,459 | 0 | T | C | 43.3% | 33.2 / 11.8 | 30 | D625G (GAT→GGT) | csrD | regulator of CsrB and CsrC decay |
| * | NC_000913 | 4,027,233 | 0 | T | A | 41.4% | 26.1 / 11.7 | 29 | intergenic (+5/+376) | fre/fadA | NAD(P)H‑flavin reductase/3‑ketoacyl‑CoA thiolase |
| * | NC_000913 | 4,256,069 | 0 | G | C | 40.0% | 41.4 / 10.7 | 31 | P133R (CCG→CGG) | plsB | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| * | NC_000913 | 3,177,748 | 0 | C | A | 36.0% | 14.0 / 12.5 | 25 | E55* (GAG→TAG) | nudF | ADP‑sugar pyrophosphatase |
| * | NC_000913 | 803,869 | 0 | G | T | 35.3% | 37.4 / 14.0 | 34 | V123L (GTG→TTG) | ybhJ | putative hydratase YbhJ |
| * | NC_000913 | 3,161,565 | 0 | A | C | 34.3% | 95.1 / 12.9 | 67 | W369G (TGG→GGG) | ftsP | cell division protein FtsP |
| * | NC_000913 | 825,235 | 0 | T | A | 33.3% | 42.9 / 12.6 | 39 | M292L (ATG→TTG) | ybhR | ABC exporter membrane subunit YbhR |
| * | NC_000913 | 1,906,769 | 0 | A | C | 32.3% | 90.8 / 12.0 | 64 | Y98D (TAT→GAT) | rlmA | 23S rRNA m(1)G745 methyltransferase |
| * | NC_000913 | 4,296,268 | 0 | T | C | 30.4% | 29.5 / 15.9 | 23 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,608,244 | 0 | T | G | 27.6% | 67.8 / 10.1 | 60 | V443G (GTG→GGG) | hyfF | hydrogenase 4 component F |
| * | NC_000913 | 115,797 | 0 | C | A | 26.1% | 68.9 / 12.7 | 46 | E435* (GAA→TAA) | hofB | T2SSE family protein |
| * | NC_000913 | 651,267 | 0 | A | T | 25.4% | 106.4 / 13.4 | 61 | L197* (TTA→TAA) | citC | citrate lyase synthetase |
| * | NC_000913 | 3,270,478 | 1 | . | G | 22.7% | 50.4 / 11.2 | 22 | noncoding (115/377 nt) | rnpB | RNase P catalytic RNA component |
| * | NC_000913 | 3,164,363 | 0 | A | C | 22.5% | 122.8 / 10.7 | 71 | G537G (GGT→GGG) | parC | DNA topoisomerase IV subunit A |
| * | NC_000913 | 4,462,097 | 0 | A | T | 22.2% | 170.0 / 12.8 | 73 | F188L (TTT→TTA) | nrdD | anaerobic ribonucleoside‑triphosphate reductase |
| * | NC_000913 | 3,282,748 | 0 | A | T | 22.1% | 165.1 / 15.9 | 78 | Y258F (TAT→TTT) | agaS | putative galactosamine‑6‑phosphate deaminase/isomerase |
| * | NC_000913 | 3,611,455 | 0 | G | A | 21.1% | 108.3 / 10.6 | 54 | C93C (TGC→TGT) | yhhS | putative transporter YhhS |
| * | NC_000913 | 2,889,514 | 0 | C | T | 21.1% | 127.2 / 11.3 | 57 | E196K (GAA→AAA) | cysI | sulfite reductase, hemoprotein subunit |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3209394 = | 53 (1.000) | 3 (0.060) | 3/486 | 3.6 | 5.0% | coding (1371/1464 nt) | ttdT | L‑tartrate:succinate antiporter |
| ? | NC_000913 | 3270731 = | 61 (1.160) | coding (1040/1146 nt) | garK | glycerate 2‑kinase 1 | |||||