Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913803,8690GT35.3% 37.4 / 14.0 34V123L (GTG→TTG) ybhJputative hydratase YbhJ
Reads supporting (aligned to +/- strand):  ref base G (2/20);  new base T (12/0);  total (14/20)
Fisher's exact test for biased strand distribution p-value = 1.66e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

CTCTTCGCATAATACGTCCGGAAATATGGATAAACTTAAAATTAAGTTTGATTCATTAGCCTCTCACGATATTACCTTTGTTGGTATTGTACAGACCGCTAAAGCGTCCGGTATGGAACGTTTCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGCGGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCAGTCGGTGAGGGCGGCGGTGAGTTGGTAAAACAGCTGCTTAATGACACCTGGGATATCGACTATCCGGGCGTGGTTGCGGTGCATCTGACCGGAAAACCTGCGCCGTATGTGGGGCCACAGGATGTGGC  >  NC_000913/803628‑804113
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                        
ctctTAGCATAATACGTCTTGAAATATGGATCGACTTAAAGTTAAGTTTGATTCATTAGCCTCTCACGCTATTACCTTTATTGGTCTTGTACAGACCGCTAAAGCGTCCGGTATGGATCGTTTCCCGCTGCCGCATGTGCTGACCAACTGCCCTAACTCACTCTGCGCCGTCGGCGGAACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGAGGCCCAGCGTTATGGCGGCGTTTTtgttgttctcc                                                                                                                                                                                                                                                 >  2:469112/1‑243 (MQ=255)
    gcGCAAAATACGTCCGGAAATATGGATAAACTTAAAATTAAGTTTGATTCATTAGCCTCTCACGATATTACCTTTGTTGGTATTGTACAGACCGCTAAAGCGTCCGGTATGGAACGTTTCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTGATGGCGGGATTTTGGTGCCTCCGCat                                                                                                                                                                                                                                              <  2:214090/248‑1 (MQ=255)
     cGCATAATACGTCCGGAAATATGGATAAACTTAAAATTAAGTTTGATTCATTAGCCTCTCACGATATTACCTTTGTTGGTATTGTACAGACCGCTAAAGCGTCCGGTATGGAACGTTTCCCGCTGCCGTATGTGCTAACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATAtt                                                                                                                                                                                                                                           <  2:15709/251‑1 (MQ=255)
           ataCGTCCGGAAATATGGATAAACTTAAAATTAAGTTTGATTCATTAGCCTCTCACGATATTACCTTTGTTGGTATTGTACAGACCGCTAAAGCGTCCGGTATGGAACGTTTCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTc                                                                                                                                                                                                                                     <  1:442747/251‑1 (MQ=255)
              cGTCCGGAAATATGGATAAACTTAAAATTAAGTTTGATTCATTAGCCTCTCACGATATTACCTTTGTTGGTATTGTACAGACCGCTAAAGCGTCCGGTATGGAACGTTTCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTcatc                                                                                                                                                                                                                                  <  1:182123/251‑1 (MQ=255)
                 ccGGAAATATTGATAAACGTAAAATTAAGATTGATTCATTAGCCTTTCCCGATATTCCCTTTGTTGGTATGGGACAGACCGCTAAAGCGCCCGGTATGTAACGTTTCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGGTGAGCCGCGGCCCAGCGTTATGGCGGTATTTCTGTTCCTCCGCATATTGCGGTcatccat                                                                                                                                                                                                                              <  2:459473/251‑1 (MQ=255)
                  cGGAAAGATGGAAAAACTGAAAATTAAGTTTGATTCATTAGCCTCTCACGATATTACCTTTGTTGGTATTGTACAGCCCGCTAAAGCGTCCGGTATGGAACGTTTCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCCCTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTcatccatc                                                                                                                                                                                                                             <  2:232618/251‑1 (MQ=255)
                         atGGATAAACTTAAAATTAAGTTTGATTCATTAGCCTCTCACGATATTACCTTTGTTGGTATTGTACAGACCGCTAAAGCGTCCGGTATGGAACGTTTCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGGATTTTTTTGCCTCCCCATATTGCGGTCATCCCTCAatatat                                                                                                                                                                                                                      >  1:452934/1‑251 (MQ=255)
                           ggATAAACTTAAAATTAAGTTTGATTCATTAGCCTCTCACGATATTACCTTTGTTGGTATTGTACAGACCGCTAAAGCGTCCGGTATGGAACGTTTCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCTGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTTATCCATCAATATATGc                                                                                                                                                                                                                    <  1:92816/251‑1 (MQ=255)
                                        aTTAAGTTTGATTCATTAGCCTCTCACGATATTACCTTTGTTGGTATTGTACAGACCGCTAAAGCGTCCGGTATGGAACGTTTCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGGATTTTTTTGCCTCCCCATATTTCGGGCATCCATCCATATATTCGTggggtggtggg                                                                                                                                                                                                       >  1:339497/1‑241 (MQ=255)
                                             gTTTGATTCATTAGCCTCTCCCGATATTACCTTTGTTGGTATTGTACAGACCGCTAAAGCGTCCGGTATGGAACGTTTCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTGTTTTTTTGCCTCCGCACATTTCGGGTAACCATCAataaattcggggggtgatggaagggg                                                                                                                                                                                                  >  1:115796/1‑228 (MQ=255)
                                                tGATTCATTAGCCTCTCACGATATTACCTTTGTTGGTATTGTACAGACCGCTAAAGCGTCCGGTATGGAACGTTTCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGCTATGGCGGGATTTTTTTGCCTCCCCCTATTTCGGCCATCCATCAatatattggtgtggtgattggaggagggg                                                                                                                                                                                               >  1:464424/1‑228 (MQ=255)
                                                                     tatTACCTTTGTTGGTATTGTACAGACCGCTAAAGCGTCCGGTATGGAACGTTTCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTTTGCCTCCCCATATTTCGGGCCTCCCTCAAAATATGCGGGGGGTGATGGCGGGCGGCGGGAAAATTATCCTccgggc                                                                                                                                                                            >  1:373614/1‑244 (MQ=255)
                                                                               gttgGTATTGTACAGACCGCTAAAGCGTCCGGTATGGAACGTTTCCCGCTGCCGTATGTGCTGCCCACCTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGCGGCAAAATGATCCTCGGGTCAGACAGCCacac                                                                                                                                                                <  2:276375/251‑1 (MQ=255)
                                                                                      ttGTACAGACCGCTAAAGGGCCCGGTATGGAACGTTTCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCGGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGCGGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTa                                                                                                                                                        <  2:263868/250‑1 (MQ=255)
                                                                                           cAGACCGCTAAAGCGTCCGGTATGGAACGTTTCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGGATTTTTTTTCCTCCCCATATTTCGGTCATCCATCAATATATTCGTGGGGTGATTGGAGGCGGCGGCAAAATTATCCCCGGGGCAGACAACCACcccccctacggggc                                                                                                                                                    >  1:174667/1‑241 (MQ=255)
                                                                                             gACCGCAAAGGCGTCCGTTATGGACCGTTTCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGCGGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCAt                                                                                                                                                <  2:371521/251‑1 (MQ=255)
                                                                                                            cGGTATGGACCGTTTCCCGCTGCCTTATGTGCTGACCAGCTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGCGGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTTCTTTAGGGACAATGGCAg                                                                                                                                 <  2:214966/251‑1 (MQ=255)
                                                                                                            cGGTATGGAACTTTTCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGCGGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCAg                                                                                                                                 <  2:452934/251‑1 (MQ=255)
                                                                                                                                tGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGAGGCCATATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGGTTTTTTTTTGCCCCCCCAATTTCGGGCATCCCATCATATATGCCTGAGATGAAGGAAGGGGGCGGCAAAAAGATCCTCGGGGCAGGCAAACAAACCCCTTACCGGGCATTAGGGAGAATgggcggcggggaggggggcgggggg                                                                                                             >  1:305272/1‑228 (MQ=255)
                                                                                                                                  ccGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGCGGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTGACGGTGCATTAGGGACAATTGCAGTCGGTGAGGGCGGCGGTGAGtt                                                                                                           <  1:390567/251‑1 (MQ=255)
                                                                                                                                   cGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGCGGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCAGTCGGTGAGGGCGGCGGTGAGTTg                                                                                                          <  1:161314/251‑1 (MQ=255)
                                                                                                                                    gTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTTTGCCTCCGCATATTGCGGGCATCCATCAATATATTCGGGGGATGTTGGGAGGGGGCGGCAAAATGATCCTCCGGGCAGAAAACCCCAACCGGTACGGGGGCTTTGGGGCAATGGCAGTCGGGGGGGGgggcgggggggtgg                                                                                                         >  1:138337/1‑243 (MQ=255)
                                                                                                                                        gtgCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTTTGGCTCCGCCTATTTCGGGCATCCCTCAATATATGCGTGAGAAGGTGGCAGGGGGCGGCCAAAAGATTCCCCGGCCAGGCAGCCACACCCGCTAACGGGCATTTGGGGCAAAGGCAGGCGGGGAggggggggggggggttggga                                                                                                      >  1:50546/1‑233 (MQ=255)
                                                                                                                                                      ccATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGCGGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCAGTCGGTGAGGGCGGCGGTGAGTTGGTAAAACAGCTGCTTAATg                                                                                       <  1:150161/251‑1 (MQ=255)
                                                                                                                                                          aaCTCCCTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTCATCCATCAATATATGCTGGAGATGATGGCAGGCGGCGGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATGAGGGACAATGGCAGTCGGTGAGGGCGGCGGTGAGTTGGTAAAGCAGCTGCTTAAGGacac                                                                                   <  2:147016/251‑1 (MQ=255)
                                                                                                                                                          aaCTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGCGGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCAGTCGGTGAGGGCGGCGGTGAGTTGGTAAAACAGCTGCTTAATGaca                                                                                    <  2:339497/250‑1 (MQ=255)
                                                                                                                                                              cactcTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGCGGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCAGTCGGTGAGGGCGGCGGTGAGTTGGTAAAACAGCTGCTTAATGACACCt                                                                                 <  1:346782/249‑1 (MQ=255)
                                                                                                                                                                            ggcggcACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGGCTCCGCATATTTCGGTCATCCATCAATATATTGGTGGGATGATGGGAGGCGGGGGCAAAAAGATCCTCGGGGCAGAAAGCCACACCCGTTACGGGGCATTTGGGACAAAGGGAGTCGGGGGGGGCGGGGGGGGGTTGGGAAAAAAGCTGGTTTATGAAACCTGGGGTATCggatatcc                                                                 >  1:92378/1‑244 (MQ=255)
                                                                                                                                                                                            gTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTTTGCCCCCCCCTATTTCGGGCCTCCCTCAATATATGCGGGAGATGATGGGAGGCGGCGGCAAAATGATCCCCGGGGCAAAAAGCCCCCCCCCGTTCGGGGCCTTTGGGACAATGGCCGGCGGGGGGGGGGGCGGGGGGTTGGTAAAACAGCTGCTTTATGACACCTGGGGGATCGACTATCCGGGCGTGGGTGCgggg                                                 >  1:404571/1‑249 (MQ=255)
                                                                                                                                                                                                         ttttGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTTTGCCTCCGCCATTTGCGGTCCTCCCTCAATATATGCGTGAGATGCTGGGCGGCGGCGGGAAAATTATCCCCGGGGCAGACAACCCCCCCCGCTACGGGGGATTTGGGGCACAGGCAGGCGGGGAGGGGGGCGGTGAGTTGGGAAAAAAGCTGCTTTATGACACCTGGGGGATCGACTTTCCCGGCGTGGTTgggggggctcttaccgga                                     >  1:287899/1‑233 (MQ=255)
                                                                                                                                                                                                                 tATCGGCGGCCCAGCGTTATGGCGGTATTTTTTTGCCTCCCCACATTGCGGGCATCCATCAATAAATGCGTGGgatgat                                                                                                                                                                                                          >  1:182280/1‑79 (MQ=255)
                                                                                                                                                                                                                 tATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTCATCCATCAATATATGCGTGAgatgat                                                                                                                                                                                                          <  2:182280/79‑1 (MQ=255)
                                                                                                                                                                                                                        ggcCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGGCATCCATCAATATATGCGTGAGATGATGGCAGGCGGCGGCAAAATGATCCTCGGGTCAGACAGCCCCACCCGTTACGGTGCATTAGGGACAATGGCAGTCGGTGAGGGCGGCGGGGAGGTGGGAAAACAGCTGCTTAATGACACCTGGGGTATCGACTATCCGGGCGTGGTTGCGGGGCATCTGACCGGGAAACCTGCGCCGTAtt                     >  1:177308/1‑250 (MQ=255)
                                                                                                                                                                                                                                            aTTTTTGTGCCTCCGCATATTGCGGTCATCCATCAATATATGCGTGAGAGGATGGCAGGCGGCGGCAAAATGATCCTCGGGGCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCAGTCGGTGAGGGCGGCGGTTAGTTGGTAAAACAGCTGCTTAATGACACCTGGGATATCGACTATCCGGGCGTGGTTGCGGTGCATCTCAGCGGAAAACCTGCGCCGTATGTGGGGCCACAGGATGTGgc  <  1:298216/251‑1 (MQ=255)
                                                                                                                                                                                                                                                  |                                                                                                                                                                                                                                                        
CTCTTCGCATAATACGTCCGGAAATATGGATAAACTTAAAATTAAGTTTGATTCATTAGCCTCTCACGATATTACCTTTGTTGGTATTGTACAGACCGCTAAAGCGTCCGGTATGGAACGTTTCCCGCTGCCGTATGTGCTGACCAACTGCCATAACTCACTCTGCGCCGTCGGCGGCACTATTAACGGTGATGACCATGTTTTTGGTTTATCGGCGGCCCAGCGTTATGGCGGTATTTTTGTGCCTCCGCATATTGCGGTCATCCATCAATATATGCGTGAGATGATGGCAGGCGGCGGCAAAATGATCCTCGGGTCAGACAGCCACACCCGTTACGGTGCATTAGGGACAATGGCAGTCGGTGAGGGCGGCGGTGAGTTGGTAAAACAGCTGCTTAATGACACCTGGGATATCGACTATCCGGGCGTGGTTGCGGTGCATCTGACCGGAAAACCTGCGCCGTATGTGGGGCCACAGGATGTGGC  >  NC_000913/803628‑804113

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: