mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 109,960 | G→A | R561H (CGT→CAT) | secA → | protein translocation ATPase |
| RA | 158,432 | G→A | P232L (CCT→CTT) | pcnB ← | poly(A) polymerase I |
| RA | 246,747 | G→T | S12S (TCG→TCT) | yafL → | NlpC/P60 family protein YafL |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 284,535 | T→G | A445A (GCT→GCG) | yagF → | D‑xylonate dehydratase |
| RA | 302,842 | T→A | intergenic (‑269/‑149) | paoA ← / → yagU | aldehyde dehydrogenase, Fe‑S subunit/DUF1440 domain‑containing inner membrane protein YagU |
| RA | 303,599 | C→T | N203N (AAC→AAT) | yagU → | DUF1440 domain‑containing inner membrane protein YagU |
| RA | 313,543 | G→A | intergenic (‑301/‑1748) | ykgR ← / → insE1 | putative membrane protein YkgR/IS3 element protein InsE |
| RA | 339,935 | C→T | A56V (GCC→GTC) | yahH → | putative uncharacterized protein YahH |
| RA | 339,941 | C→T | T58I (ACT→ATT) | yahH → | putative uncharacterized protein YahH |
| RA | 339,958 | G→A | D64N (GAC→AAC) | yahH → | putative uncharacterized protein YahH |
| JC | 366,919 | (CCAG)3→4 | coding (592/1083 nt) | lacI ← | DNA‑binding transcriptional repressor LacI |
| RA | 480,295 | 2 bp→AA | coding (13‑14/219 nt) | hha ← | hemolysin expression‑modulating protein Hha |
| RA | 690,948 | G→A | V279V (GTC→GTT) | ybeX ← | CorC‑HlyC family protein YbeX |
| RA | 700,038 | G→A | H97Y (CAT→TAT) | umpH ← | UMP phosphatase |
| RA | 789,597 | C→T | S128N (AGT→AAT) | galK ← | galactokinase |
| RA | 809,217 | 2 bp→AG | coding (40‑41/1290 nt) | bioA ← | adenosylmethionine‑8‑amino‑7‑oxononanoate aminotransferase |
| RA | 891,983 | T→A | L6* (TTG→TAG) | rimK → | ribosomal protein S6 modification protein |
| RA | 908,760 | A→T | C179S (TGC→AGC) | ltaE ← | low‑specificity L‑threonine aldolase |
| RA | 968,837 | G→A | D158N (GAT→AAT) | lpxK → | tetraacyldisaccharide 4'‑kinase |
| RA | 1,005,503 | A→G | N246D (AAT→GAT) | pyrD → | dihydroorotate dehydrogenase, type 2 |
| RA | 1,040,126 | G→T | L277L (CTG→CTT) | appB → | cytochrome bd‑II subunit 2 |
| RA | 1,061,935 | G→A | S46N (AGC→AAC) | torD → | trimethylamine‑N‑oxide reductase‑specific chaperone |
| RA | 1,111,727 | 2 bp→TT | coding (865‑866/2544 nt) | opgH → | osmoregulated periplasmic glucans biosynthesis protein H |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,224,071 | A→G | intergenic (+622/+208) | ymgJ → / ← minE | uncharacterized protein YmgJ/Z‑ring positioning protein MinE |
| RA | 1,236,343 | T→C | E300G (GAA→GGA) | ycgB ← | PF04293 family protein YcgB |
| RA | 1,290,947 | C→T | Q236* (CAA→TAA) | rssB → | regulator of RpoS |
| RA | 1,292,992 | A→C | intergenic (‑70/‑535) | hns ← / → tdk | DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase |
| RA | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,318,275 | Δ1 bp | coding (141/1194 nt) | trpB ← | tryptophan synthase subunit beta |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| RA | 1,374,498 | G→T | G137C (GGC→TGC) | ycjP → | putative ABC transporter membrane subunit YcjP |
| RA | 1,405,758 | G→A | intergenic (‑7/‑221) | mcaS ← / → smrA | small regulatory RNA McaS/DNA endonuclease SmrA |
| RA | 1,425,329 | Δ1 bp | intergenic (+90/‑48) | trkG → / → ynaK | K(+) transporter TrkG/ParB‑like nuclease domain‑containing protein YnaK |
| RA | 1,433,144 | G→A | F177F (TTC→TTT) | pinR ← | putative site‑specific recombinase |
| RA | 1,433,199 | A→G | V159A (GTG→GCG) | pinR ← | putative site‑specific recombinase |
| RA | 1,531,689 | A→G | intergenic (‑1185/‑127) | yncO ← / → ydcC | protein YncO/H repeat‑associated putative transposase YdcC |
| RA | 1,553,630 | C→A | G70V (GGT→GTT) | adhP ← | ethanol dehydrogenase/alcohol dehydrogenase |
| RA | 1,555,731 | Δ1 bp | intergenic (‑62/+95) | maeA ← / ← sra | malate dehydrogenase (oxaloacetate‑decarboxylating)/ribosome‑associated protein Sra |
| RA | 1,600,234 | C→T | intergenic (‑25/+54) | lsrK ← / ← lsrR | autoinducer‑2 kinase/DNA‑binding transcriptional repressor LsrR |
| RA | 1,601,098 | C→A | S48S (TCG→TCT) | lsrR ← | DNA‑binding transcriptional repressor LsrR |
| RA | 1,601,103 | C→T | V47M (GTG→ATG) | lsrR ← | DNA‑binding transcriptional repressor LsrR |
| RA | 1,632,712 | A→G | intergenic (‑427/‑178) | ydfJ ← / → ynfT | putative transporter YdfJ/protein YnfT |
| RA | 1,632,735 | G→A | intergenic (‑450/‑155) | ydfJ ← / → ynfT | putative transporter YdfJ/protein YnfT |
| RA | 1,641,002 | T→C | intergenic (+27/+337) | ynfU → / ← cspB | putative zinc‑binding protein YnfU/cold shock‑like protein CspB |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| JC JC | 1,649,673 | IS2 (–) +5 bp | coding (65‑69/189 nt) | dicB → | cell division inhibition protein DicB |
| RA | 1,649,971 | C→T | P60S (CCG→TCG) | ydfD → | lysis protein |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,702,757 | C→T | F175F (TTC→TTT) | add → | adenosine deaminase |
| JC JC | 1,743,496 | IS5 (+) +4 bp | coding (40‑43/1374 nt) | mdtK → | multidrug efflux pump MdtK |
| RA | 1,793,377 | Δ1 bp | coding (182/750 nt) | btuD ← | vitamin B12 ABC transporter ATP binding subunit |
| RA | 1,861,311 | C→T | G8S (GGC→AGC) | ydjL ← | putative zinc‑binding dehydrogenase YdjL |
| RA | 1,874,202 | G→A | intergenic (‑20/‑150) | yoaI ← / → yeaL | protein YoaI/DUF441 domain‑containing inner membrane protein YeaL |
| RA | 1,882,591 | G→A | C227Y (TGC→TAC) | dmlA → | D‑malate/3‑isopropylmalate dehydrogenase (decarboxylating) |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| JC JC | 1,907,448 | IS5 (–) +4 bp | coding (141‑144/144 nt) | yobF ← | DUF2527 domain‑containing protein YobF |
| RA | 1,911,929 | 2 bp→TT | coding (647‑648/882 nt) | htpX ← | protease HtpX |
| RA | 1,915,132 | G→T | P135T (CCG→ACG) | proQ ← | RNA chaperone ProQ |
| RA | 1,915,945 | C→T | G62S (GGC→AGC) | msrC ← | free methionine‑(R)‑sulfoxide reductase |
| RA | 1,936,634 | C→T | intergenic (‑320/‑18) | zwf ← / → yebK | NADP(+)‑dependent glucose‑6‑phosphate dehydrogenase/DNA‑binding transcriptional repressor YebK |
| MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
| RA | 2,040,433 | C→A | A319D (GCC→GAC) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| JC | 2,092,996 | (TGGC)4→3 | coding (599‑602/1071 nt) | hisC → | histidinol‑phosphate aminotransferase |
| RA | 2,099,525 | A→T | I30N (ATT→AAT) | ugd ← | UDP‑glucose 6‑dehydrogenase |
| RA | 2,111,259 | Δ1 bp | coding (718/900 nt) | rfbD ← | dTDP‑4‑dehydrorhamnose reductase |
| RA | 2,155,880 | C→T | L206L (CTC→CTT) | mdtB → | multidrug efflux pump RND permease subunit MdtB |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,173,448 | C→T | intergenic (‑575/+834) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,174,015 | Δ1 bp | intergenic (‑1142/+267) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,224,169 | A→G | F234F (TTT→TTC) | pbpG ← | peptidoglycan DD‑endopeptidase PbpG |
| RA | 2,237,105 | G→T | P217T (CCG→ACG) | mglC ← | D‑galactose/methyl‑galactoside ABC transporter membrane subunit |
| JC JC | 2,237,684 | IS5 (+) +4 bp | coding (67‑70/1011 nt) | mglC ← | D‑galactose/methyl‑galactoside ABC transporter membrane subunit |
| RA | 2,264,460 | 2 bp→AT | coding (598‑599/1182 nt) | setB → | sugar exporter SetB |
| RA | 2,301,461 | C→A | M431I (ATG→ATT) | napA ← | periplasmic nitrate reductase subunit NapA |
| RA | 2,319,078 | C→A | D267Y (GAT→TAT) | rcsC ← | histidine kinase RcsC |
| RA | 2,360,550 | Δ1 bp | coding (865/1206 nt) | rhmD ← | L‑rhamnonate dehydratase |
| RA | 2,392,233 | C→G | G270A (GGT→GCT) | nuoM ← | NADH:quinone oxidoreductase subunit M |
| RA | 2,423,891 | C→T | V207I (GTA→ATA) | hisP ← | lysine/arginine/ornithine ABC transporter/histidine ABC transporter, ATP binding subunit |
| RA | 2,443,447 | G→A | A562T (GCG→ACG) | mnmC → | fused tRNA 5‑aminomethyl‑2‑thiouridylate methyltransferase and tRNA 5‑aminomethyl‑2‑thiouridylate synthase |
| RA | 2,473,392 | G→A | intergenic (‑146/‑212) | yfdO ← / → yfdP | protein YdfO/uncharacterized protein YfdP |
| RA | 2,473,397 | +T | intergenic (‑151/‑207) | yfdO ← / → yfdP | protein YdfO/uncharacterized protein YfdP |
| RA | 2,510,609 | C→T | P327L (CCG→CTG) | yfeO → | putative transport protein YfeO |
| MC JC | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| RA | 2,587,112 | C→T | A461V (GCA→GTA) | narQ → | sensor histidine kinase NarQ |
| RA | 2,630,852 | G→A | S176N (AGC→AAC) | yfgI → | nalidixic acid resistance protein YfgI |
| RA | 2,732,992 | G→A | I394I (ATC→ATT) I394I (ATC→ATT) |
clpB ← clpB ← |
chaperone protein ClpB chaperone protein ClpB |
| RA | 2,739,259 | +A | coding (811/1122 nt) | tyrA ← | fused chorismate mutase/prephenate dehydrogenase |
| RA | 2,739,269 | Δ1 bp | coding (801/1122 nt) | tyrA ← | fused chorismate mutase/prephenate dehydrogenase |
| JC | 2,765,463 | (TATGGCAC)6→7 | intergenic (‑310/+50) | abpA ← / ← yfjM | anti‑bacteriophage protein/protein YfjM |
| RA | 2,804,133 | C→T | S211F (TCT→TTT) | nrdF → | ribonucleoside‑diphosphate reductase 2 subunit beta |
| RA | 2,814,459 | Δ1 bp | coding (275/516 nt) | luxS ← | S‑ribosylhomocysteine lyase |
| RA | 2,814,461 | C→T | L91L (CTG→CTA) | luxS ← | S‑ribosylhomocysteine lyase |
| RA | 2,823,288 | C→T | G161D (GGC→GAC) | recA ← | DNA recombination/repair protein RecA |
| RA | 2,867,455 | G→A | Q33* (CAG→TAG) | rpoS ← | RNA polymerase sigma factor RpoS |
| RA | 2,871,153 | T→G | N51T (AAC→ACC) | truD ← | tRNA pseudouridine(13) synthase |
| RA | 2,926,543 | 2 bp→TT | coding (236‑237/1365 nt) | ppnN → | nucleotide 5'‑monophosphate nucleosidase |
| RA | 2,926,772 | C→A | G155G (GGC→GGA) | ppnN → | nucleotide 5'‑monophosphate nucleosidase |
| RA | 2,981,924 | C→T | G87R (GGG→AGG) | araE ← | arabinose:H(+) symporter |
| RA | 2,982,000 | C→T | Q61Q (CAG→CAA) | araE ← | arabinose:H(+) symporter |
| RA | 3,040,842 | 2 bp→AA | coding (228‑229/267 nt) | sdhE ← | FAD assembly factor |
| RA | 3,043,360 | G→A | I88I (ATC→ATT) | yqfB ← | N(4)‑acetylcytidine amidohydrolase |
| RA | 3,071,412 | C→T | intergenic (‑168/+47) | fbaA ← / ← pgk | fructose‑bisphosphate aldolase class II/phosphoglycerate kinase |
| RA | 3,089,109 | A→T | K276* (AAA→TAA) | galP → | galactose:H(+) symporter |
| RA | 3,132,532 | G→A | P227P (CCC→CCT) | yghR ← | putative ATP‑binding protein YghR |
| RA | 3,161,616 | G→A | R352C (CGC→TGC) | ftsP ← | cell division protein FtsP |
| RA | 3,167,566 | C→T | V51V (GTG→GTA) | ygiS ← | putative deoxycholate binding periplasmic protein |
| RA | 3,207,549 | Δ1 bp | coding (179/606 nt) | ttdB → | L(+)‑tartrate dehydratase subunit beta |
| RA | 3,242,343 | C→T | M324I (ATG→ATA) | uxaA ← | D‑altronate dehydratase |
| JC JC | 3,263,159 | IS5 (+) +4 bp | coding (499‑502/1209 nt) | tdcD ← | propionate kinase |
| RA | 3,329,743 | G→T | D261Y (GAT→TAT) | dacB → | peptidoglycan DD‑endopeptidase DacB |
| MC JC | 3,349,206 | Δ16,350 bp | IS5‑mediated | [mtgA]–[yhcE] | [mtgA], elbB, arcZ, arcB, yhcC, gltB, gltD, gltF, yhcA, yhcD, [yhcE] |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,432,105 | C→T | L120L (CTG→CTA) | smg ← | DUF494 domain‑containing protein Smg |
| RA | 3,443,961 | G→A | A46V (GCC→GTC) | secY ← | Sec translocon subunit SecY |
| RA | 3,443,980 | G→A | P40S (CCG→TCG) | secY ← | Sec translocon subunit SecY |
| RA | 3,452,022 | G→A | P89S (CCG→TCG) | rplD ← | 50S ribosomal subunit protein L4 |
| RA | 3,452,218 | G→A | F23F (TTC→TTT) | rplD ← | 50S ribosomal subunit protein L4 |
| RA | 3,457,378 | C→T | L334L (CTC→CTT) | gspD → | Type II secretion system protein GspD |
| RA | 3,458,245 | A→C | S623S (TCA→TCC) | gspD → | Type II secretion system protein GspD |
| RA | 3,474,425 | T→G | K43T (AAA→ACA) | rpsL ← | 30S ribosomal subunit protein S12 |
| RA | 3,494,679 | C→T | T223T (ACC→ACT) | nirB → | nitrite reductase (NADH) large subunit |
| RA | 3,525,566 | T→C | intergenic (+143/+23) | mrcA → / ← nudE | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA/ADP‑sugar diphosphatase NudE |
| RA | 3,537,999 | C→T | F205F (TTC→TTT) | yhgF → | putative RNA‑binding protein YhgF |
| RA | 3,555,047 | G→T | V655F (GTC→TTC) | malT → | DNA‑binding transcriptional activator MalT |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,606,891 | C→T | F147F (TTC→TTT) | zntA → | Zn(2(+))/Cd(2(+))/Pb(2(+)) exporting P‑type ATPase |
| RA | 3,617,379 | T→A | I122K (ATA→AAA) | nikD → | Ni(2(+)) ABC transporter ATP binding subunit NikD |
| RA | 3,624,545 | T→A | D56E (GAT→GAA) | yhhI → | putative transposase |
| RA | 3,647,428 | C→T | A377V (GCG→GTG) | gor → | glutathione reductase (NADPH) |
| RA | 3,679,508 | C→T | T30T (ACC→ACT) | kdgK → | 2‑dehydro‑3‑deoxygluconokinase |
| RA | 3,686,705 | G→A | F823F (TTC→TTT) | bcsC ← | cellulose synthase outer membrane channel |
| RA | 3,707,947 | C→A | intergenic (‑242/+669) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,712,407 | G→A | G176G (GGC→GGT) | yhjY ← | putative outer membrane protein YhjY |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,729,955 | 2 bp→AA | coding (810‑811/1323 nt) | xylA ← | xylose isomerase |
| JC JC | 3,731,420 | IS1 (–) +9 bp | coding (290‑298/993 nt) | xylF → | xylose ABC transporter periplasmic binding protein |
| RA | 3,769,447 | G→A | E35K (GAA→AAA) | yibV → | PF15596 family protein YibV |
| RA | 3,773,040 | (G)6→4 | coding (760‑761/1914 nt) | mtlA → | mannitol‑specific PTS enzyme IICBA component |
| RA | 3,783,983 | G→A | S49F (TCC→TTC) | secB ← | protein export chaperone SecB |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,865,885 | A→G | V130A (GTT→GCT) | yidE ← | putative transport protein YidE |
| RA | 3,899,195 | C→T | E67K (GAA→AAA) | yieK ← | putative glucosamine‑6‑phosphate deaminase YieK |
| RA | 3,903,234 | G→A | V156V (GTC→GTT) | bglB ← | 6‑phospho‑beta‑glucosidase B |
| RA | 3,961,662 | G→T | G329V (GGC→GTC) | rep → | ATP‑dependent DNA helicase Rep |
| RA | 3,965,174 | G→A | H153Y (CAC→TAC) | rhlB ← | ATP‑dependent RNA helicase RhlB |
| RA | 3,968,683 | G→A | M256I (ATG→ATA) | rfe → | UDP‑N‑acetylglucosamine‑‑undecaprenyl‑phosphate N‑acetylglucosaminephosphotransferase |
| RA | 3,969,748 | T→C | S240P (TCG→CCG) | wzzE → | enterobacterial common antigen polysaccharide co‑polymerase |
| RA | 3,999,664 | C→T | S561L (TCG→TTG) | uvrD → | DNA helicase II |
| RA | 4,009,698 | G→A | A177T (GCA→ACA) | pldB → | lysophospholipase L2 |
| RA | 4,017,197 | C→T | intergenic (+5/‑136) | udp → / → rmuC | uridine phosphorylase/putative recombination limiting protein RmuC |
| RA | 4,084,903 | T→G | N307T (AAC→ACC) | fdoG ← | formate dehydrogenase O subunit alpha |
| RA | 4,092,703 | A→G | F41L (TTC→CTC) | frvA ← | putative PTS enzyme IIA component FrvA |
| RA | 4,113,851 | G→A | H208Y (CAT→TAT) | fpr ← | flavodoxin/ferredoxin‑NADP(+) reductase |
| RA | 4,143,377 | C→T | S283L (TCA→TTA) | frwC → | putative PTS enzyme IIC component FrwC |
| RA | 4,193,996 | T→G | D70A (GAT→GCT) | thiE ← | thiamine phosphate synthase |
| RA | 4,215,347 | T→A | intergenic (+138/‑131) | metA → / → aceB | homoserine O‑succinyltransferase/malate synthase A |
| RA | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| RA | 4,293,781 | 2 bp→AT | coding (239‑240/597 nt) | nrfG → | putative formate‑dependent nitrite reductase complex subunit NrfG |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,325,644 | C→T | S33N (AGC→AAC) | yjdN ← | PF06983 family protein YjdN |
| RA | 4,400,254 | C→T | intergenic (+52/‑34) | miaA → / → hfq | tRNA dimethylallyltransferase/RNA‑binding protein Hfq |
| RA | 4,473,900 | C→T | G52R (GGA→AGA) | bdcA ← | c‑di‑GMP‑binding biofilm dispersal mediator protein |
| RA | 4,475,493 | T→C | F19F (TTT→TTC) | yjgL → | protein YjgL |
| RA | 4,510,238 | T→G | intergenic (+445/+452) | insO → / ← fecE | IS911B regulator fragment/ferric citrate ABC transporter ATP binding subunit |
| RA | 4,546,601 | C→T | I502I (ATC→ATT) | fimD → | type I fimbriae usher protein |
| JC | 4,617,831 | (AAAACCTCTAC)1→2 | coding (509/780 nt) | deoC → | deoxyribose‑phosphate aldolase |
| RA | 4,630,651 | G→T | intergenic (‑129/‑82) | ettA ← / → slt | energy‑dependent translational throttle protein EttA/soluble lytic murein transglycosylase |
| RA | 4,630,657 | G→T | intergenic (‑135/‑76) | ettA ← / → slt | energy‑dependent translational throttle protein EttA/soluble lytic murein transglycosylase |
| RA | 4,635,268 | C→T | E15K (GAA→AAA) | rob ← | DNA‑binding transcriptional dual regulator Rob |
| RA | 4,636,925 | G→C | R77P (CGC→CCC) | creC → | sensory histidine kinase CreC |
| RA | 4,638,240 | G→A | L21L (TTG→TTA) | creD → | putative inner membrane protein CreD |
| JC | 4,640,645 | +AAAT | intergenic (+103/‑73) | yjjY → / → ytjE | uncharacterized protein YjjY/protein YtjE |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196277 | 1211436 | 15160 | 50 [44] | [49] 50 | [icd]–mcrA | [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1632749–1632883 | 1633404–1632942 | 60–656 | 51 [47] | [47] 51 | ynfT–ydfK | ynfT,ydfK |
| * | * | ÷ | NC_000913 | 3423813–3424232 | 3424452–3424238 | 7–640 | 50 [48] | [46] 51 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 4037985–4038688 | 4039188–4038699 | 12–1204 | 51 [48] | [49] 50 | rrlA | 23S ribosomal RNA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 1 (0.010) | 182 (1.290) | 97/582 | 0.1 | 99.7% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 43 (0.300) | 36/590 | 2.6 | 25.8% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 2699679 = | 124 (0.870) | coding (17/261 nt) | yfhL | putative 4Fe‑4S cluster‑containing protein YfhL | |||||
| * | ? | NC_000913 | = 2290113 | NA (NA) | 59 (0.410) | 41/590 | 2.1 | 32.2% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2699682 | 124 (0.870) | coding (20/261 nt) | yfhL | putative 4Fe‑4S cluster‑containing protein YfhL | |||||
| * | ? | NC_000913 | 3284799 = | 162 (1.140) | 98 (0.690) | 55/586 | 1.0 | 37.7% | coding (115/804 nt) | agaC | galactosamine‑specific PTS enzyme IIC component |
| ? | NC_000913 | = 3366750 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 3284802 | 162 (1.130) | 119 (0.830) | 65/590 | 0.6 | 45.0% | coding (118/804 nt) | agaC | galactosamine‑specific PTS enzyme IIC component |
| ? | NC_000913 | = 3285900 | 129 (0.900) | coding (423/792 nt) | agaD | galactosamine‑specific PTS enzyme IID component | |||||