#=GENOME_DIFF	1.0
#=CREATED	16:00:51 10 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME8657_S20_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8657_S20_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8657_S20_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8657_S20_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8657_S20_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	680149886
#=CONVERTED-READS	2300802
#=INPUT-BASES	680319769
#=INPUT-READS	2301382
#=MAPPED-BASES	657130923
#=MAPPED-READS	2224427
SNP	1	185	NC_000913	109960	A
SNP	2	188	NC_000913	158432	A
SNP	3	190	NC_000913	246747	T
DEL	4	470,482	NC_000913	257908	776
SNP	5	191	NC_000913	284535	G
SNP	6	192	NC_000913	302842	A
SNP	7	193	NC_000913	303599	T
SNP	8	194	NC_000913	313543	A
SNP	9	197	NC_000913	339935	T
SNP	10	198	NC_000913	339941	T
SNP	11	199	NC_000913	339958	A
INS	12	488	NC_000913	366919	CCAG	repeat_length=4	repeat_new_copies=4	repeat_ref_copies=3	repeat_seq=CCAG
SUB	13	207,208	NC_000913	480295	2	AA
SNP	14	212	NC_000913	690948	A
SNP	15	213	NC_000913	700038	A
SNP	16	216	NC_000913	789597	T
SUB	17	217,218	NC_000913	809217	2	AG
SNP	18	224	NC_000913	891983	A
SNP	19	225	NC_000913	908760	T
SNP	20	227	NC_000913	968837	A
SNP	21	228	NC_000913	1005503	G
SNP	22	229	NC_000913	1040126	T
SNP	23	230	NC_000913	1061935	A
SUB	24	232,233	NC_000913	1111727	2	TT
SNP	25	234	NC_000913	1169836	G
SNP	26	235	NC_000913	1189980	G
SNP	27	237	NC_000913	1196220	T
SNP	28	238	NC_000913	1196232	T
SNP	29	239	NC_000913	1196245	C
SNP	30	240	NC_000913	1196247	G
SNP	31	249	NC_000913	1224071	G
SNP	32	250	NC_000913	1236343	C
SNP	33	252	NC_000913	1290947	T
SNP	34	253	NC_000913	1292992	C
SNP	35	255	NC_000913	1301992	T
SNP	36	256	NC_000913	1306736	G
DEL	37	257	NC_000913	1318275	1
SNP	38	259	NC_000913	1337394	G
SNP	39	261	NC_000913	1358859	C
SNP	40	262	NC_000913	1374498	T
SNP	41	263	NC_000913	1405758	A
DEL	42	264	NC_000913	1425329	1
SNP	43	266	NC_000913	1433144	A
SNP	44	267	NC_000913	1433199	G
SNP	45	277	NC_000913	1531689	G
SNP	46	278	NC_000913	1553630	A
DEL	47	279	NC_000913	1555731	1
SNP	48	281	NC_000913	1600234	T
SNP	49	282	NC_000913	1601098	A
SNP	50	283	NC_000913	1601103	T
SNP	51	285	NC_000913	1632712	G
SNP	52	286	NC_000913	1632735	A
SNP	53	288	NC_000913	1641002	C
SNP	54	289	NC_000913	1643679	T
MOB	55	525,526	NC_000913	1649673	IS2	-1	5
SNP	56	290	NC_000913	1649971	T
SNP	57	291	NC_000913	1652331	C
SNP	58	292	NC_000913	1702757	T
MOB	59	521,522	NC_000913	1743496	IS5	1	4
DEL	60	295	NC_000913	1793377	1
SNP	61	298	NC_000913	1861311	T
SNP	62	299	NC_000913	1874202	A
SNP	63	300	NC_000913	1882591	A
SNP	64	301	NC_000913	1894839	C
MOB	65	528,529	NC_000913	1907448	IS5	-1	4
SUB	66	303,304	NC_000913	1911929	2	TT
SNP	67	305	NC_000913	1915132	T
SNP	68	306	NC_000913	1915945	T
SNP	69	307	NC_000913	1936634	T
DEL	70	473,531	NC_000913	1978503	776
SNP	71	308	NC_000913	2040433	A
DEL	72	542	NC_000913	2092996	4	repeat_length=4	repeat_new_copies=3	repeat_ref_copies=4	repeat_seq=TGGC
SNP	73	310	NC_000913	2099525	T
DEL	74	311	NC_000913	2111259	1
SNP	75	312	NC_000913	2155880	T
DEL	76	313,314	NC_000913	2173363	2
SNP	77	315	NC_000913	2173448	T
DEL	78	316	NC_000913	2174015	1
SNP	79	317	NC_000913	2224169	G
SNP	80	318	NC_000913	2237105	T
MOB	81	550,551	NC_000913	2237684	IS5	1	4
SUB	82	320,321	NC_000913	2264460	2	AT
SNP	83	323	NC_000913	2301461	A
SNP	84	324	NC_000913	2319078	A
DEL	85	326	NC_000913	2360550	1
SNP	86	327	NC_000913	2392233	G
SNP	87	328	NC_000913	2423891	T
SNP	88	329	NC_000913	2443447	A
SNP	89	330	NC_000913	2473392	A
INS	90	331	NC_000913	2473397	T
SNP	91	333	NC_000913	2510609	T
DEL	92	474,570	NC_000913	2558699	6790
SNP	93	334	NC_000913	2587112	T
SNP	94	335	NC_000913	2630852	A
SNP	95	337	NC_000913	2732992	A
INS	96	338	NC_000913	2739259	A
DEL	97	339	NC_000913	2739269	1
INS	98	573	NC_000913	2765463	TATGGCAC	repeat_length=8	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=TATGGCAC
SNP	99	346	NC_000913	2804133	T
DEL	100	347	NC_000913	2814459	1
SNP	101	348	NC_000913	2814461	T
SNP	102	351	NC_000913	2823288	T
SNP	103	353	NC_000913	2867455	A
SNP	104	354	NC_000913	2871153	G
SUB	105	355,356	NC_000913	2926543	2	TT
SNP	106	357	NC_000913	2926772	A
SNP	107	358	NC_000913	2981924	T
SNP	108	359	NC_000913	2982000	T
SUB	109	363,364	NC_000913	3040842	2	AA
SNP	110	365	NC_000913	3043360	A
SNP	111	368	NC_000913	3071412	T
SNP	112	369	NC_000913	3089109	T
SNP	113	370	NC_000913	3132532	A
SNP	114	372	NC_000913	3161616	A
SNP	115	373	NC_000913	3167566	T
DEL	116	376	NC_000913	3207549	1
SNP	117	378	NC_000913	3242343	T
MOB	118	554,563	NC_000913	3263159	IS5	1	4
SNP	119	384	NC_000913	3329743	T
DEL	120	475,555	NC_000913	3349206	16350	mediated=IS5
SNP	121	385	NC_000913	3388041	G
SNP	122	387	NC_000913	3432105	T
SNP	123	389	NC_000913	3443961	A
SNP	124	390	NC_000913	3443980	A
SNP	125	392	NC_000913	3452022	A
SNP	126	393	NC_000913	3452218	A
SNP	127	394	NC_000913	3457378	T
SNP	128	395	NC_000913	3458245	C
SNP	129	396	NC_000913	3474425	G
SNP	130	398	NC_000913	3494679	T
SNP	131	399	NC_000913	3525566	C
SNP	132	400	NC_000913	3537999	T
SNP	133	401	NC_000913	3555047	T
INS	134	402	NC_000913	3560455	G
SNP	135	403	NC_000913	3606891	T
SNP	136	404	NC_000913	3617379	A
SNP	137	405	NC_000913	3624545	A
SNP	138	407	NC_000913	3647428	T
SNP	139	409	NC_000913	3679508	T
SNP	140	410	NC_000913	3686705	A
SNP	141	411	NC_000913	3707947	A
SNP	142	412	NC_000913	3712407	A
SNP	143	414	NC_000913	3725176	G
SUB	144	415,416	NC_000913	3729955	2	AA
MOB	145	594,595	NC_000913	3731420	IS1	-1	9
SNP	146	419	NC_000913	3769447	A
DEL	147	420,421	NC_000913	3773040	2	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=6	repeat_seq=G
SNP	148	422	NC_000913	3783983	A
INS	149	424	NC_000913	3815883	C
SNP	150	426	NC_000913	3865885	G
SNP	151	428	NC_000913	3899195	T
SNP	152	429	NC_000913	3903234	A
SNP	153	431	NC_000913	3961662	T
SNP	154	432	NC_000913	3965174	A
SNP	155	433	NC_000913	3968683	A
SNP	156	434	NC_000913	3969748	C
SNP	157	435	NC_000913	3999664	T
SNP	158	436	NC_000913	4009698	A
SNP	159	437	NC_000913	4017197	T
SNP	160	438	NC_000913	4084903	G
SNP	161	439	NC_000913	4092703	G
SNP	162	441	NC_000913	4113851	A
SNP	163	442	NC_000913	4143377	T
SNP	164	443	NC_000913	4193996	G
SNP	165	445	NC_000913	4215347	A
SNP	166	446	NC_000913	4223638	C
SUB	167	449,450	NC_000913	4293781	2	AT
INS	168	453,454	NC_000913	4296381	GC
SNP	169	456	NC_000913	4325644	T
SNP	170	458	NC_000913	4400254	T
SNP	171	461	NC_000913	4473900	T
SNP	172	462	NC_000913	4475493	C
SNP	173	463	NC_000913	4510238	G
SNP	174	464	NC_000913	4546601	T
INS	175	611	NC_000913	4617831	AAAACCTCTAC	repeat_length=11	repeat_new_copies=2	repeat_ref_copies=1	repeat_seq=AAAACCTCTAC
SNP	176	465	NC_000913	4630651	T
SNP	177	466	NC_000913	4630657	T
SNP	178	467	NC_000913	4635268	T
SNP	179	468	NC_000913	4636925	C
SNP	180	469	NC_000913	4638240	A
INS	181	612	NC_000913	4640645	AAAT
RA	182	.	NC_000913	12152	0	G	T	bias_e_value=0.00519672	bias_p_value=1.11958e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=309.6	fisher_strand_p_value=4.51044e-11	frequency=2.663e-01	ks_quality_p_value=1	major_base=G	major_cov=62/73	major_frequency=7.337e-01	minor_base=T	minor_cov=0/49	new_cov=0/49	polymorphism_frequency=2.663e-01	polymorphism_score=12.8	prediction=polymorphism	ref_cov=62/73	total_cov=62/122
RA	183	.	NC_000913	58065	0	C	A	bias_e_value=1.24933e-06	bias_p_value=2.69156e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.7	fisher_strand_p_value=8.04565e-15	frequency=3.267e-01	ks_quality_p_value=1	major_base=C	major_cov=41/60	major_frequency=6.733e-01	minor_base=A	minor_cov=49/0	new_cov=49/0	polymorphism_frequency=3.267e-01	polymorphism_score=30.3	prediction=polymorphism	ref_cov=41/60	total_cov=90/60
RA	184	.	NC_000913	85651	0	G	T	bias_e_value=0.0138652	bias_p_value=2.98712e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=283.5	fisher_strand_p_value=1.25517e-10	frequency=2.866e-01	ks_quality_p_value=1	major_base=G	major_cov=54/63	major_frequency=7.134e-01	minor_base=T	minor_cov=0/47	new_cov=0/47	polymorphism_frequency=2.866e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=54/63	total_cov=54/110
RA	185	.	NC_000913	109960	0	G	A	bias_e_value=3753930	bias_p_value=0.808749	consensus_score=465.3	fisher_strand_p_value=0.449275	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=76/61	major_frequency=9.928e-01	minor_base=G	minor_cov=0/1	new_cov=76/61	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=76/62
RA	186	.	NC_000913	141849	0	C	A	bias_e_value=0.000711836	bias_p_value=1.53358e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=389.4	fisher_strand_p_value=5.70317e-12	frequency=2.247e-01	ks_quality_p_value=1	major_base=C	major_cov=56/82	major_frequency=7.753e-01	minor_base=A	minor_cov=39/1	new_cov=39/1	polymorphism_frequency=2.247e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=56/82	total_cov=95/84
RA	187	.	NC_000913	147802	0	C	A	bias_e_value=0.0856309	bias_p_value=1.84484e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=279.5	fisher_strand_p_value=8.42601e-10	frequency=2.484e-01	ks_quality_p_value=1	major_base=C	major_cov=60/58	major_frequency=7.516e-01	minor_base=A	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=2.484e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=60/58	total_cov=99/58
RA	188	.	NC_000913	158432	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=477.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=80/65	major_frequency=9.932e-01	minor_base=C	minor_cov=1/0	new_cov=80/65	polymorphism_frequency=9.932e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=81/65
RA	189	.	NC_000913	190843	0	C	A	bias_e_value=0.00346412	bias_p_value=7.46312e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.7	fisher_strand_p_value=2.95634e-11	frequency=4.266e-01	ks_quality_p_value=1	major_base=C	major_cov=46/36	major_frequency=5.734e-01	minor_base=A	minor_cov=61/0	new_cov=61/0	polymorphism_frequency=4.266e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=46/36	total_cov=107/36
RA	190	.	NC_000913	246747	0	G	T	consensus_score=664.0	frequency=1	major_base=T	major_cov=97/87	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=97/87	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=97/87
RA	191	.	NC_000913	284535	0	T	G	consensus_score=219.4	frequency=1	major_base=G	major_cov=31/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/30
RA	192	.	NC_000913	302842	0	T	A	consensus_score=580.2	frequency=1	major_base=A	major_cov=69/97	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/97	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/97
RA	193	.	NC_000913	303599	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=591.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=90/80	major_frequency=9.942e-01	minor_base=G	minor_cov=1/0	new_cov=90/80	polymorphism_frequency=9.942e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=91/80
RA	194	.	NC_000913	313543	0	G	A	bias_e_value=3959820	bias_p_value=0.853105	consensus_score=542.3	fisher_strand_p_value=0.509554	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=89/66	major_frequency=9.873e-01	minor_base=G	minor_cov=2/0	new_cov=89/66	polymorphism_frequency=9.873e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=91/66
RA	195	.	NC_000913	320845	0	C	A	bias_e_value=119.584	bias_p_value=2.57633e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.0	fisher_strand_p_value=1.8116e-06	frequency=2.946e-01	ks_quality_p_value=1	major_base=C	major_cov=53/38	major_frequency=7.054e-01	minor_base=A	minor_cov=37/1	new_cov=37/1	polymorphism_frequency=2.946e-01	polymorphism_score=18.1	prediction=polymorphism	ref_cov=53/38	total_cov=90/40
RA	196	.	NC_000913	339467	0	C	T	bias_e_value=4327880	bias_p_value=0.932401	consensus_reject=FREQUENCY_CUTOFF	consensus_score=52.2	fisher_strand_p_value=0.655608	frequency=4.125e-01	ks_quality_p_value=1	major_base=C	major_cov=23/24	major_frequency=5.875e-01	minor_base=T	minor_cov=18/15	new_cov=18/15	polymorphism_frequency=4.125e-01	polymorphism_score=96.0	prediction=polymorphism	ref_cov=23/24	total_cov=41/39
RA	197	.	NC_000913	339935	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=87.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=10/25	major_frequency=9.722e-01	minor_base=G	minor_cov=0/1	new_cov=10/25	polymorphism_frequency=9.722e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/26
RA	198	.	NC_000913	339941	0	C	T	consensus_score=93.7	frequency=1	major_base=T	major_cov=10/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/26
RA	199	.	NC_000913	339958	0	G	A	consensus_score=102.5	frequency=1	major_base=A	major_cov=10/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/26
RA	200	.	NC_000913	339979	0	G	A	bias_e_value=3153210	bias_p_value=0.679329	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.0	fisher_strand_p_value=0.315387	frequency=5.500e-01	ks_quality_p_value=1	major_base=A	major_cov=5/17	major_frequency=5.500e-01	minor_base=G	minor_cov=7/11	new_cov=5/17	polymorphism_frequency=5.500e-01	polymorphism_score=47.6	prediction=polymorphism	ref_cov=7/11	total_cov=12/28
RA	201	.	NC_000913	339986	0	G	A	bias_e_value=3880030	bias_p_value=0.835916	consensus_reject=FREQUENCY_CUTOFF	consensus_score=29.9	fisher_strand_p_value=0.484955	frequency=6.098e-01	ks_quality_p_value=1	major_base=A	major_cov=6/19	major_frequency=6.098e-01	minor_base=G	minor_cov=6/10	new_cov=6/19	polymorphism_frequency=6.098e-01	polymorphism_score=40.0	prediction=polymorphism	ref_cov=6/10	total_cov=13/29
RA	202	.	NC_000913	339992	0	C	.	bias_e_value=4423890	bias_p_value=0.953085	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.1	fisher_strand_p_value=0.730017	frequency=3.659e-01	ks_quality_p_value=0.97225	major_base=C	major_cov=7/19	major_frequency=6.341e-01	minor_base=.	minor_cov=5/10	new_cov=5/10	polymorphism_frequency=3.659e-01	polymorphism_score=55.0	prediction=polymorphism	ref_cov=7/19	total_cov=12/29
RA	203	.	NC_000913	365150	1	.	C	bias_e_value=1359660	bias_p_value=0.292926	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.2	fisher_strand_p_value=0.0843487	frequency=2.178e-01	ks_quality_p_value=1	major_base=.	major_cov=43/36	major_frequency=7.822e-01	minor_base=C	minor_cov=17/5	new_cov=17/5	polymorphism_frequency=2.178e-01	polymorphism_score=85.4	prediction=polymorphism	ref_cov=43/36	total_cov=60/41
RA	204	.	NC_000913	365150	2	.	C	bias_e_value=1318400	bias_p_value=0.284037	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.3	fisher_strand_p_value=0.0847442	frequency=2.100e-01	ks_quality_p_value=0.953279	major_base=.	major_cov=43/36	major_frequency=7.900e-01	minor_base=C	minor_cov=16/5	new_cov=16/5	polymorphism_frequency=2.100e-01	polymorphism_score=85.2	prediction=polymorphism	ref_cov=43/36	total_cov=60/41
RA	205	.	NC_000913	430299	0	C	A	bias_e_value=13.927	bias_p_value=3.00044e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=344.3	fisher_strand_p_value=1.81609e-07	frequency=2.138e-01	ks_quality_p_value=1	major_base=C	major_cov=72/53	major_frequency=7.862e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.138e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=72/53	total_cov=106/54
RA	206	.	NC_000913	442471	0	C	A	bias_e_value=0.000156594	bias_p_value=3.37367e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.8	fisher_strand_p_value=1.18537e-12	frequency=3.286e-01	ks_quality_p_value=1	major_base=C	major_cov=42/52	major_frequency=6.714e-01	minor_base=A	minor_cov=46/0	new_cov=46/0	polymorphism_frequency=3.286e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=42/52	total_cov=88/52
RA	207	.	NC_000913	480295	0	G	A	consensus_score=666.4	frequency=1	major_base=A	major_cov=89/96	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=89/96	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=89/96
RA	208	.	NC_000913	480296	0	G	A	consensus_score=658.2	frequency=1	major_base=A	major_cov=89/96	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=89/96	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=89/96
RA	209	.	NC_000913	538075	0	A	G	bias_e_value=254.012	bias_p_value=5.47246e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=307.2	fisher_strand_p_value=4.08114e-06	frequency=2.148e-01	ks_quality_p_value=1	major_base=A	major_cov=73/44	major_frequency=7.852e-01	minor_base=G	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.148e-01	polymorphism_score=30.5	prediction=polymorphism	ref_cov=73/44	total_cov=105/44
RA	210	.	NC_000913	571586	0	G	T	bias_e_value=1.02336e-11	bias_p_value=2.20473e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=486.3	fisher_strand_p_value=4.84842e-20	frequency=2.244e-01	ks_quality_p_value=1	major_base=G	major_cov=112/47	major_frequency=7.756e-01	minor_base=T	minor_cov=0/46	new_cov=0/46	polymorphism_frequency=2.244e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=112/47	total_cov=112/93
RA	211	.	NC_000913	572359	0	G	T	bias_e_value=0.0108175	bias_p_value=2.33053e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=433.1	fisher_strand_p_value=9.68727e-11	frequency=2.049e-01	ks_quality_p_value=1	major_base=G	major_cov=78/85	major_frequency=7.951e-01	minor_base=T	minor_cov=0/42	new_cov=0/42	polymorphism_frequency=2.049e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=78/85	total_cov=78/127
RA	212	.	NC_000913	690948	0	G	A	bias_e_value=3784590	bias_p_value=0.815355	consensus_score=391.8	fisher_strand_p_value=0.457627	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=53/64	major_frequency=9.915e-01	minor_base=C	minor_cov=1/0	new_cov=53/64	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/64
RA	213	.	NC_000913	700038	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=448.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=63/66	major_frequency=9.923e-01	minor_base=G	minor_cov=0/1	new_cov=63/66	polymorphism_frequency=9.923e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=63/67
RA	214	.	NC_000913	701705	0	G	T	bias_e_value=111.747	bias_p_value=2.40747e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.4	fisher_strand_p_value=1.68423e-06	frequency=2.427e-01	ks_quality_p_value=1	major_base=G	major_cov=38/40	major_frequency=7.573e-01	minor_base=T	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.427e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=38/40	total_cov=38/65
RA	215	.	NC_000913	710830	0	G	T	bias_e_value=9.69901e-06	bias_p_value=2.08956e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=287.8	fisher_strand_p_value=6.66762e-14	frequency=3.023e-01	ks_quality_p_value=1	major_base=G	major_cov=64/56	major_frequency=6.977e-01	minor_base=T	minor_cov=0/52	new_cov=0/52	polymorphism_frequency=3.023e-01	polymorphism_score=26.8	prediction=polymorphism	ref_cov=64/56	total_cov=65/108
RA	216	.	NC_000913	789597	0	C	T	consensus_score=365.2	frequency=1	major_base=T	major_cov=45/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/67
RA	217	.	NC_000913	809217	0	C	A	consensus_score=319.3	frequency=1	major_base=A	major_cov=50/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/42
RA	218	.	NC_000913	809218	0	A	G	consensus_score=344.4	frequency=1	major_base=G	major_cov=50/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/42
RA	219	.	NC_000913	832448	0	G	A	bias_e_value=1247.04	bias_p_value=0.000268662	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.7	fisher_strand_p_value=2.30021e-05	frequency=2.100e-01	ks_quality_p_value=1	major_base=G	major_cov=36/43	major_frequency=7.900e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.100e-01	polymorphism_score=16.6	prediction=polymorphism	ref_cov=36/43	total_cov=36/64
RA	220	.	NC_000913	834674	0	C	A	bias_e_value=1.93836e-09	bias_p_value=4.17602e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=332.8	fisher_strand_p_value=1.04131e-17	frequency=2.517e-01	ks_quality_p_value=1	major_base=C	major_cov=25/82	major_frequency=7.483e-01	minor_base=A	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=2.517e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=25/82	total_cov=61/82
RA	221	.	NC_000913	847955	0	G	A	bias_e_value=1.93096e-10	bias_p_value=4.16007e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=327.9	fisher_strand_p_value=9.79598e-19	frequency=2.564e-01	ks_quality_p_value=1	major_base=G	major_cov=95/50	major_frequency=7.436e-01	minor_base=A	minor_cov=0/50	new_cov=0/50	polymorphism_frequency=2.564e-01	polymorphism_score=75.1	prediction=polymorphism	ref_cov=95/50	total_cov=95/101
RA	222	.	NC_000913	848028	0	G	T	bias_e_value=7.16983e-06	bias_p_value=1.54467e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=481.6	fisher_strand_p_value=4.88033e-14	frequency=2.000e-01	ks_quality_p_value=1	major_base=G	major_cov=98/66	major_frequency=8.000e-01	minor_base=T	minor_cov=0/41	new_cov=0/41	polymorphism_frequency=2.000e-01	polymorphism_score=11.3	prediction=polymorphism	ref_cov=98/66	total_cov=98/107
RA	223	.	NC_000913	878655	0	C	A	bias_e_value=9.45284e-05	bias_p_value=2.03652e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=305.3	fisher_strand_p_value=7.02639e-13	frequency=2.483e-01	ks_quality_p_value=1	major_base=C	major_cov=40/69	major_frequency=7.517e-01	minor_base=A	minor_cov=36/0	new_cov=36/0	polymorphism_frequency=2.483e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=40/69	total_cov=76/69
RA	224	.	NC_000913	891983	0	T	A	consensus_score=423.0	frequency=1	major_base=A	major_cov=50/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/71
RA	225	.	NC_000913	908760	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=454.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=61/67	major_frequency=9.922e-01	minor_base=G	minor_cov=0/1	new_cov=61/67	polymorphism_frequency=9.922e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/68
RA	226	.	NC_000913	926334	0	G	T	bias_e_value=0.00643639	bias_p_value=1.38666e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=266.9	fisher_strand_p_value=5.63703e-11	frequency=2.658e-01	ks_quality_p_value=1	major_base=G	major_cov=59/57	major_frequency=7.342e-01	minor_base=T	minor_cov=0/42	new_cov=0/42	polymorphism_frequency=2.658e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=59/57	total_cov=59/99
RA	227	.	NC_000913	968837	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=304.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=62/33	major_frequency=9.896e-01	minor_base=C	minor_cov=1/0	new_cov=62/33	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/33
RA	228	.	NC_000913	1005503	0	A	G	consensus_score=528.3	frequency=1	major_base=G	major_cov=85/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=85/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=85/55
RA	229	.	NC_000913	1040126	0	G	T	bias_e_value=3869220	bias_p_value=0.833588	consensus_score=463.3	fisher_strand_p_value=0.481752	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=71/65	major_frequency=9.927e-01	minor_base=G	minor_cov=0/1	new_cov=71/65	polymorphism_frequency=9.927e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=71/66
RA	230	.	NC_000913	1061935	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=337.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=62/46	major_frequency=9.908e-01	minor_base=C	minor_cov=1/0	new_cov=62/46	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/46
RA	231	.	NC_000913	1097118	0	C	A	bias_e_value=2763950	bias_p_value=0.595467	consensus_reject=FREQUENCY_CUTOFF	consensus_score=38.2	fisher_strand_p_value=0.487762	frequency=3.875e-01	ks_quality_p_value=0.510911	major_base=C	major_cov=19/30	major_frequency=6.125e-01	minor_base=A	minor_cov=15/16	new_cov=15/16	polymorphism_frequency=3.875e-01	polymorphism_score=77.3	prediction=polymorphism	ref_cov=19/30	total_cov=34/46
RA	232	.	NC_000913	1111727	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=452.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=58/75	major_frequency=9.925e-01	minor_base=G	minor_cov=0/1	new_cov=58/75	polymorphism_frequency=9.925e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/76
RA	233	.	NC_000913	1111728	0	C	T	consensus_score=461.0	frequency=1	major_base=T	major_cov=58/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/76
RA	234	.	NC_000913	1169836	0	A	G	consensus_score=414.3	frequency=1	major_base=G	major_cov=52/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/58
RA	235	.	NC_000913	1189980	0	A	G	consensus_score=503.9	frequency=1	major_base=G	major_cov=60/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/74
RA	236	.	NC_000913	1196203	0	G	T	bias_e_value=0.329879	bias_p_value=7.10694e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.6	fisher_strand_p_value=3.47035e-09	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=45/21	major_frequency=7.500e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.500e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=45/21	total_cov=45/43
RA	237	.	NC_000913	1196220	0	C	T	consensus_score=267.3	frequency=1	major_base=T	major_cov=45/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/39
RA	238	.	NC_000913	1196232	0	C	T	consensus_score=226.3	frequency=1	major_base=T	major_cov=41/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/32
RA	239	.	NC_000913	1196245	0	T	C	consensus_score=182.5	frequency=1	major_base=C	major_cov=31/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/29
RA	240	.	NC_000913	1196247	0	A	G	consensus_score=182.6	frequency=1	major_base=G	major_cov=31/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/29
RA	241	.	NC_000913	1196277	0	C	T	consensus_score=119.6	deleted=1	frequency=1	major_base=T	major_cov=23/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/21
RA	242	.	NC_000913	1196280	0	G	C	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=111.8	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998943	major_base=C	major_cov=22/21	major_frequency=9.773e-01	minor_base=A	minor_cov=1/0	new_cov=22/21	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/21
RA	243	.	NC_000913	1196283	0	A	G	consensus_score=126.7	deleted=1	frequency=1	major_base=G	major_cov=23/21	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/21	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/21
RA	244	.	NC_000913	1196292	0	C	T	consensus_score=115.7	deleted=1	frequency=1	major_base=T	major_cov=23/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=23/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=23/19
RA	245	.	NC_000913	1196304	0	G	A	consensus_score=94.9	deleted=1	frequency=1	major_base=A	major_cov=20/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/18
RA	246	.	NC_000913	1196316	0	T	A	consensus_score=77.2	deleted=1	frequency=1	major_base=A	major_cov=18/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/14
RA	247	.	NC_000913	1196325	0	A	G	consensus_score=53.9	deleted=1	frequency=1	major_base=G	major_cov=13/11	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/11	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/11
RA	248	.	NC_000913	1196352	0	C	A	consensus_score=29.7	deleted=1	frequency=1	major_base=A	major_cov=10/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=10/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=10/5
RA	249	.	NC_000913	1224071	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=668.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=80/99	major_frequency=9.944e-01	minor_base=A	minor_cov=0/1	new_cov=80/99	polymorphism_frequency=9.944e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=80/100
RA	250	.	NC_000913	1236343	0	T	C	consensus_score=418.1	frequency=1	major_base=C	major_cov=54/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/65
RA	251	.	NC_000913	1267442	0	C	A	bias_e_value=0.000765796	bias_p_value=1.64984e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.1	fisher_strand_p_value=6.15286e-12	frequency=2.961e-01	ks_quality_p_value=1	major_base=C	major_cov=50/57	major_frequency=7.039e-01	minor_base=A	minor_cov=45/0	new_cov=45/0	polymorphism_frequency=2.961e-01	polymorphism_score=16.5	prediction=polymorphism	ref_cov=50/57	total_cov=95/57
RA	252	.	NC_000913	1290947	0	C	T	bias_e_value=3793620	bias_p_value=0.817299	consensus_score=556.3	fisher_strand_p_value=0.460123	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=88/74	major_frequency=9.939e-01	minor_base=G	minor_cov=0/1	new_cov=88/74	polymorphism_frequency=9.939e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=88/76
RA	253	.	NC_000913	1292992	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_score=708.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=97/97	major_frequency=9.949e-01	minor_base=T	minor_cov=0/1	new_cov=97/97	polymorphism_frequency=9.949e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=98/98
RA	254	.	NC_000913	1296918	0	G	T	bias_e_value=6.44017e-07	bias_p_value=1.38747e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=338.4	fisher_strand_p_value=4.06449e-15	frequency=2.418e-01	ks_quality_p_value=1	major_base=G	major_cov=79/37	major_frequency=7.582e-01	minor_base=T	minor_cov=0/37	new_cov=0/37	polymorphism_frequency=2.418e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=79/37	total_cov=79/74
RA	255	.	NC_000913	1301992	0	A	T	consensus_score=514.2	frequency=1	major_base=T	major_cov=68/86	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/86	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/86
RA	256	.	NC_000913	1306736	0	T	G	bias_e_value=4126660	bias_p_value=0.889049	consensus_score=451.8	fisher_strand_p_value=0.568546	frequency=1	ks_quality_p_value=0.998321	major_base=G	major_cov=70/48	major_frequency=9.752e-01	minor_base=T	minor_cov=1/2	new_cov=70/48	polymorphism_frequency=9.752e-01	polymorphism_score=-3.8	prediction=consensus	ref_cov=1/2	total_cov=71/50
RA	257	.	NC_000913	1318275	0	G	.	bias_e_value=4639460	bias_p_value=0.999529	consensus_score=635.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.969454	major_base=.	major_cov=82/54	major_frequency=9.927e-01	minor_base=G	minor_cov=1/0	new_cov=82/54	polymorphism_frequency=9.927e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=1/0	total_cov=83/54
RA	258	.	NC_000913	1334966	0	A	C	bias_e_value=6.46142e-07	bias_p_value=1.39205e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=398.5	fisher_strand_p_value=4.07831e-15	frequency=2.458e-01	ks_quality_p_value=1	major_base=A	major_cov=88/90	major_frequency=7.542e-01	minor_base=C	minor_cov=58/0	new_cov=58/0	polymorphism_frequency=2.458e-01	polymorphism_score=29.7	prediction=polymorphism	ref_cov=88/90	total_cov=146/90
RA	259	.	NC_000913	1337394	0	A	G	bias_e_value=1176890	bias_p_value=0.25355	consensus_score=408.4	fisher_strand_p_value=0.0690255	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=69/46	major_frequency=9.746e-01	minor_base=T	minor_cov=0/3	new_cov=69/46	polymorphism_frequency=9.746e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/49
RA	260	.	NC_000913	1351463	0	C	A	bias_e_value=1.34683	bias_p_value=2.90162e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.6	fisher_strand_p_value=1.5274e-08	frequency=2.857e-01	ks_quality_p_value=1	major_base=C	major_cov=51/49	major_frequency=7.143e-01	minor_base=A	minor_cov=39/1	new_cov=39/1	polymorphism_frequency=2.857e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=51/49	total_cov=90/50
RA	261	.	NC_000913	1358859	0	T	C	consensus_score=489.5	frequency=1	major_base=C	major_cov=67/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=67/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/62
RA	262	.	NC_000913	1374498	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=442.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=78/51	major_frequency=9.923e-01	minor_base=C	minor_cov=1/0	new_cov=78/51	polymorphism_frequency=9.923e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/51
RA	263	.	NC_000913	1405758	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=583.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=98/74	major_frequency=9.942e-01	minor_base=C	minor_cov=1/0	new_cov=98/74	polymorphism_frequency=9.942e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=99/74
RA	264	.	NC_000913	1425329	0	C	.	bias_e_value=139620	bias_p_value=0.0300797	consensus_score=786.0	fisher_strand_p_value=0.00473488	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=81/99	major_frequency=9.278e-01	minor_base=C	minor_cov=1/13	new_cov=81/99	polymorphism_frequency=9.278e-01	polymorphism_score=44.4	prediction=consensus	ref_cov=1/13	total_cov=82/112
RA	265	.	NC_000913	1427992	0	G	T	bias_e_value=1.44344e-07	bias_p_value=3.10975e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=270.9	fisher_strand_p_value=8.71663e-16	frequency=3.095e-01	ks_quality_p_value=1	major_base=G	major_cov=69/47	major_frequency=6.905e-01	minor_base=T	minor_cov=0/52	new_cov=0/52	polymorphism_frequency=3.095e-01	polymorphism_score=18.4	prediction=polymorphism	ref_cov=69/47	total_cov=69/99
RA	266	.	NC_000913	1433144	0	G	A	consensus_score=48.2	frequency=1	major_base=A	major_cov=3/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/25
RA	267	.	NC_000913	1433199	0	A	G	consensus_score=119.9	frequency=1	major_base=G	major_cov=19/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/45
RA	268	.	NC_000913	1434642	0	G	A	bias_e_value=4607670	bias_p_value=0.992679	consensus_reject=FREQUENCY_CUTOFF	consensus_score=488.5	fisher_strand_p_value=0.882192	frequency=2.470e-01	ks_quality_p_value=0.999175	major_base=G	major_cov=104/82	major_frequency=7.530e-01	minor_base=A	minor_cov=33/28	new_cov=33/28	polymorphism_frequency=2.470e-01	polymorphism_score=163.5	prediction=polymorphism	ref_cov=104/82	total_cov=137/110
RA	269	.	NC_000913	1466210	0	G	A	bias_e_value=1522790	bias_p_value=0.32807	consensus_reject=FREQUENCY_CUTOFF	consensus_score=281.5	fisher_strand_p_value=0.0990516	frequency=2.246e-01	ks_quality_p_value=1	major_base=G	major_cov=40/67	major_frequency=7.754e-01	minor_base=A	minor_cov=17/14	new_cov=17/14	polymorphism_frequency=2.246e-01	polymorphism_score=62.5	prediction=polymorphism	ref_cov=40/67	total_cov=57/81
RA	270	.	NC_000913	1466418	0	A	G	bias_e_value=4550870	bias_p_value=0.980442	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.1	fisher_strand_p_value=0.808855	frequency=2.059e-01	ks_quality_p_value=1	major_base=A	major_cov=39/42	major_frequency=7.941e-01	minor_base=G	minor_cov=11/10	new_cov=11/10	polymorphism_frequency=2.059e-01	polymorphism_score=34.0	prediction=polymorphism	ref_cov=39/42	total_cov=51/52
RA	271	.	NC_000913	1466432	0	A	G	bias_e_value=4562580	bias_p_value=0.982964	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.1	fisher_strand_p_value=0.821187	frequency=2.524e-01	ks_quality_p_value=1	major_base=A	major_cov=38/39	major_frequency=7.476e-01	minor_base=G	minor_cov=14/12	new_cov=14/12	polymorphism_frequency=2.524e-01	polymorphism_score=47.2	prediction=polymorphism	ref_cov=38/39	total_cov=52/52
RA	272	.	NC_000913	1466435	0	A	G	bias_e_value=2633400	bias_p_value=0.567342	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.9	fisher_strand_p_value=0.229535	frequency=2.136e-01	ks_quality_p_value=1	major_base=A	major_cov=38/43	major_frequency=7.864e-01	minor_base=G	minor_cov=14/8	new_cov=14/8	polymorphism_frequency=2.136e-01	polymorphism_score=39.5	prediction=polymorphism	ref_cov=38/43	total_cov=52/52
RA	273	.	NC_000913	1466438	0	T	G	bias_e_value=3180850	bias_p_value=0.685284	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.1	fisher_strand_p_value=0.358904	frequency=2.330e-01	ks_quality_p_value=0.893231	major_base=T	major_cov=37/42	major_frequency=7.670e-01	minor_base=G	minor_cov=14/10	new_cov=14/10	polymorphism_frequency=2.330e-01	polymorphism_score=51.3	prediction=polymorphism	ref_cov=37/42	total_cov=52/52
RA	274	.	NC_000913	1484228	0	C	T	bias_e_value=3367800	bias_p_value=0.72556	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.1	fisher_strand_p_value=0.35782	frequency=5.443e-01	ks_quality_p_value=1	major_base=T	major_cov=15/28	major_frequency=5.443e-01	minor_base=C	minor_cov=17/19	new_cov=15/28	polymorphism_frequency=5.443e-01	polymorphism_score=99.5	prediction=polymorphism	ref_cov=17/19	total_cov=34/47
RA	275	.	NC_000913	1502770	0	T	C	bias_e_value=0.0322423	bias_p_value=6.94629e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=302.1	fisher_strand_p_value=3.03107e-10	frequency=2.065e-01	ks_quality_p_value=1	major_base=T	major_cov=70/53	major_frequency=7.935e-01	minor_base=C	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=2.065e-01	polymorphism_score=28.6	prediction=polymorphism	ref_cov=70/53	total_cov=70/85
RA	276	.	NC_000913	1502772	0	G	A	bias_e_value=0.0278055	bias_p_value=5.99044e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=286.6	fisher_strand_p_value=2.59644e-10	frequency=2.026e-01	ks_quality_p_value=1	major_base=G	major_cov=70/52	major_frequency=7.974e-01	minor_base=A	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.026e-01	polymorphism_score=24.8	prediction=polymorphism	ref_cov=70/52	total_cov=70/84
RA	277	.	NC_000913	1531689	0	A	G	bias_e_value=3824330	bias_p_value=0.823915	consensus_score=824.4	fisher_strand_p_value=0.46875	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=119/104	major_frequency=9.955e-01	minor_base=T	minor_cov=0/1	new_cov=119/104	polymorphism_frequency=9.955e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=119/105
RA	278	.	NC_000913	1553630	0	C	A	bias_e_value=4641650	bias_p_value=1	consensus_score=517.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=79/72	major_frequency=9.934e-01	minor_base=C	minor_cov=1/0	new_cov=79/72	polymorphism_frequency=9.934e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=80/72
RA	279	.	NC_000913	1555731	0	C	.	consensus_score=788.4	frequency=1	major_base=.	major_cov=104/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=104/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=104/62
RA	280	.	NC_000913	1579973	0	C	A	bias_e_value=4.01992e-06	bias_p_value=8.66053e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=401.1	fisher_strand_p_value=2.68558e-14	frequency=2.474e-01	ks_quality_p_value=1	major_base=C	major_cov=65/81	major_frequency=7.526e-01	minor_base=A	minor_cov=48/0	new_cov=48/0	polymorphism_frequency=2.474e-01	polymorphism_score=16.9	prediction=polymorphism	ref_cov=65/81	total_cov=113/82
RA	281	.	NC_000913	1600234	0	C	T	bias_e_value=3878890	bias_p_value=0.835671	consensus_score=450.9	fisher_strand_p_value=0.484615	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=67/62	major_frequency=9.923e-01	minor_base=G	minor_cov=0/1	new_cov=67/62	polymorphism_frequency=9.923e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=68/63
RA	282	.	NC_000913	1601098	0	C	A	bias_e_value=3885170	bias_p_value=0.837022	consensus_score=641.3	fisher_strand_p_value=0.486486	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=89/95	major_frequency=9.946e-01	minor_base=C	minor_cov=1/0	new_cov=89/95	polymorphism_frequency=9.946e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=90/95
RA	283	.	NC_000913	1601103	0	C	T	consensus_score=631.3	frequency=1	major_base=T	major_cov=89/94	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=89/94	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=89/94
RA	284	.	NC_000913	1631903	0	G	T	bias_e_value=0.00370233	bias_p_value=7.97632e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=258.5	fisher_strand_p_value=3.16832e-11	frequency=2.838e-01	ks_quality_p_value=1	major_base=G	major_cov=56/50	major_frequency=7.162e-01	minor_base=T	minor_cov=0/42	new_cov=0/42	polymorphism_frequency=2.838e-01	polymorphism_score=15.2	prediction=polymorphism	ref_cov=56/50	total_cov=57/92
RA	285	.	NC_000913	1632712	0	A	G	consensus_score=199.5	frequency=1	major_base=G	major_cov=26/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=26/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/37
RA	286	.	NC_000913	1632735	0	G	A	consensus_score=158.8	frequency=1	major_base=A	major_cov=25/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/29
RA	287	.	NC_000913	1632770	0	T	C	consensus_score=109.4	deleted=1	frequency=1	major_base=C	major_cov=21/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/17
RA	288	.	NC_000913	1641002	0	T	C	consensus_score=846.6	frequency=1	major_base=C	major_cov=103/123	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=103/123	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=103/123
RA	289	.	NC_000913	1643679	0	A	T	consensus_score=397.0	frequency=1	major_base=T	major_cov=55/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/59
RA	290	.	NC_000913	1649971	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=438.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=65/60	major_frequency=9.921e-01	minor_base=C	minor_cov=1/0	new_cov=65/60	polymorphism_frequency=9.921e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=66/60
RA	291	.	NC_000913	1652331	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=593.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=84/71	major_frequency=9.936e-01	minor_base=A	minor_cov=1/0	new_cov=84/71	polymorphism_frequency=9.936e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=85/71
RA	292	.	NC_000913	1702757	0	C	T	bias_e_value=3847530	bias_p_value=0.828914	consensus_score=407.6	fisher_strand_p_value=0.47541	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=57/64	major_frequency=9.918e-01	minor_base=C	minor_cov=1/0	new_cov=57/64	polymorphism_frequency=9.918e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=58/64
RA	293	.	NC_000913	1706031	0	G	T	bias_e_value=0.00836601	bias_p_value=1.80238e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=202.3	fisher_strand_p_value=7.40936e-11	frequency=2.991e-01	ks_quality_p_value=1	major_base=G	major_cov=48/34	major_frequency=7.009e-01	minor_base=T	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=2.991e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=48/34	total_cov=48/69
RA	294	.	NC_000913	1756353	0	C	A	bias_e_value=0.00619304	bias_p_value=1.33423e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.5	fisher_strand_p_value=5.41507e-11	frequency=3.000e-01	ks_quality_p_value=1	major_base=C	major_cov=47/58	major_frequency=7.000e-01	minor_base=A	minor_cov=44/1	new_cov=44/1	polymorphism_frequency=3.000e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=47/58	total_cov=91/59
RA	295	.	NC_000913	1793377	0	T	.	consensus_score=411.6	frequency=1	major_base=.	major_cov=44/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/43
RA	296	.	NC_000913	1813135	0	C	A	bias_e_value=3.14383e-07	bias_p_value=6.77309e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=498.1	fisher_strand_p_value=1.94211e-15	frequency=2.288e-01	ks_quality_p_value=1	major_base=C	major_cov=85/97	major_frequency=7.712e-01	minor_base=A	minor_cov=54/0	new_cov=54/0	polymorphism_frequency=2.288e-01	polymorphism_score=14.1	prediction=polymorphism	ref_cov=85/97	total_cov=139/97
RA	297	.	NC_000913	1827714	0	G	T	bias_e_value=205.812	bias_p_value=4.43403e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.9	fisher_strand_p_value=3.25163e-06	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=42/42	major_frequency=7.500e-01	minor_base=T	minor_cov=1/27	new_cov=1/27	polymorphism_frequency=2.500e-01	polymorphism_score=18.8	prediction=polymorphism	ref_cov=42/42	total_cov=43/69
RA	298	.	NC_000913	1861311	0	C	T	bias_e_value=3356960	bias_p_value=0.723226	consensus_score=473.6	fisher_strand_p_value=0.355556	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=87/47	major_frequency=9.926e-01	minor_base=G	minor_cov=0/1	new_cov=87/47	polymorphism_frequency=9.926e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=87/48
RA	299	.	NC_000913	1874202	0	G	A	bias_e_value=3621240	bias_p_value=0.780163	consensus_score=555.5	fisher_strand_p_value=0.415205	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=100/70	major_frequency=9.942e-01	minor_base=G	minor_cov=0/1	new_cov=100/70	polymorphism_frequency=9.942e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=100/71
RA	300	.	NC_000913	1882591	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=385.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=52/60	major_frequency=9.912e-01	minor_base=G	minor_cov=0/1	new_cov=52/60	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=52/61
RA	301	.	NC_000913	1894839	0	T	C	consensus_score=500.2	frequency=1	major_base=C	major_cov=70/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=70/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=70/61
RA	302	.	NC_000913	1902613	0	C	A	bias_e_value=0.000551885	bias_p_value=1.18898e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=263.9	fisher_strand_p_value=4.37862e-12	frequency=2.241e-01	ks_quality_p_value=1	major_base=C	major_cov=25/65	major_frequency=7.759e-01	minor_base=A	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=2.241e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=25/65	total_cov=51/65
RA	303	.	NC_000913	1911929	0	C	T	bias_e_value=3524840	bias_p_value=0.759393	consensus_score=423.3	fisher_strand_p_value=0.392308	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/79	major_frequency=9.923e-01	minor_base=C	minor_cov=1/0	new_cov=50/79	polymorphism_frequency=9.923e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=51/79
RA	304	.	NC_000913	1911930	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=408.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=51/78	major_frequency=9.923e-01	minor_base=G	minor_cov=0/1	new_cov=51/78	polymorphism_frequency=9.923e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/79
RA	305	.	NC_000913	1915132	0	G	T	consensus_score=430.7	frequency=1	major_base=T	major_cov=50/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/71
RA	306	.	NC_000913	1915945	0	C	T	consensus_score=376.8	frequency=1	major_base=T	major_cov=56/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/52
RA	307	.	NC_000913	1936634	0	C	T	consensus_score=555.6	frequency=1	major_base=T	major_cov=71/93	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/93	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/93
RA	308	.	NC_000913	2040433	0	C	A	consensus_score=425.8	frequency=1	major_base=A	major_cov=73/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/56
RA	309	.	NC_000913	2099484	0	G	T	bias_e_value=1.95459e-05	bias_p_value=4.21099e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=432.9	fisher_strand_p_value=1.37547e-13	frequency=2.275e-01	ks_quality_p_value=1	major_base=G	major_cov=87/76	major_frequency=7.725e-01	minor_base=T	minor_cov=0/48	new_cov=0/48	polymorphism_frequency=2.275e-01	polymorphism_score=11.8	prediction=polymorphism	ref_cov=87/76	total_cov=87/124
RA	310	.	NC_000913	2099525	0	A	T	bias_e_value=4641650	bias_p_value=1	consensus_score=705.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=101/102	major_frequency=9.951e-01	minor_base=C	minor_cov=0/1	new_cov=101/102	polymorphism_frequency=9.951e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=101/103
RA	311	.	NC_000913	2111259	0	G	.	consensus_score=588.6	frequency=1	major_base=.	major_cov=48/76	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/76	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/76
RA	312	.	NC_000913	2155880	0	C	T	bias_e_value=2649390	bias_p_value=0.570787	consensus_score=209.3	fisher_strand_p_value=0.231884	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=15/53	major_frequency=9.855e-01	minor_base=C	minor_cov=1/0	new_cov=15/53	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=16/53
RA	313	.	NC_000913	2173363	0	C	.	bias_e_value=3868700	bias_p_value=0.833476	consensus_score=400.1	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=0.997597	major_base=.	major_cov=41/45	major_frequency=9.885e-01	minor_base=C	minor_cov=1/0	new_cov=41/45	polymorphism_frequency=9.885e-01	polymorphism_score=-3.4	prediction=consensus	ref_cov=1/0	total_cov=42/45
RA	314	.	NC_000913	2173364	0	C	.	bias_e_value=3798340	bias_p_value=0.818316	consensus_score=399.4	fisher_strand_p_value=0.482759	frequency=1	ks_quality_p_value=0.95583	major_base=.	major_cov=41/45	major_frequency=9.885e-01	minor_base=C	minor_cov=1/0	new_cov=41/45	polymorphism_frequency=9.885e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=1/0	total_cov=42/45
RA	315	.	NC_000913	2173448	0	C	T	consensus_score=315.2	frequency=1	major_base=T	major_cov=41/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/52
RA	316	.	NC_000913	2174015	0	T	.	bias_e_value=4641650	bias_p_value=1	consensus_score=494.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999281	major_base=.	major_cov=53/52	major_frequency=9.906e-01	minor_base=T	minor_cov=1/0	new_cov=53/52	polymorphism_frequency=9.906e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=1/0	total_cov=54/52
RA	317	.	NC_000913	2224169	0	A	G	consensus_score=380.0	frequency=1	major_base=G	major_cov=45/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/59
RA	318	.	NC_000913	2237105	0	G	T	consensus_score=240.6	frequency=1	major_base=T	major_cov=36/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/35
RA	319	.	NC_000913	2238371	0	C	A	bias_e_value=1.20469e-06	bias_p_value=2.5954e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=323.4	fisher_strand_p_value=7.7495e-15	frequency=2.378e-01	ks_quality_p_value=1	major_base=C	major_cov=32/77	major_frequency=7.622e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.378e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=32/77	total_cov=66/77
RA	320	.	NC_000913	2264460	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=316.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=47/44	major_frequency=9.891e-01	minor_base=G	minor_cov=1/0	new_cov=47/44	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=48/44
RA	321	.	NC_000913	2264461	0	A	T	consensus_score=316.0	frequency=1	major_base=T	major_cov=48/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/44
RA	322	.	NC_000913	2288418	0	G	T	bias_e_value=3.84175e-09	bias_p_value=8.27668e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=334.9	fisher_strand_p_value=2.10059e-17	frequency=2.798e-01	ks_quality_p_value=1	major_base=G	major_cov=80/41	major_frequency=7.202e-01	minor_base=T	minor_cov=0/47	new_cov=0/47	polymorphism_frequency=2.798e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=80/41	total_cov=81/88
RA	323	.	NC_000913	2301461	0	C	A	consensus_score=292.0	frequency=1	major_base=A	major_cov=43/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	324	.	NC_000913	2319078	0	C	A	consensus_score=388.1	frequency=1	major_base=A	major_cov=69/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/46
RA	325	.	NC_000913	2326713	0	C	A	bias_e_value=4.57121e-05	bias_p_value=9.84823e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=302.9	fisher_strand_p_value=3.31188e-13	frequency=2.532e-01	ks_quality_p_value=1	major_base=C	major_cov=45/70	major_frequency=7.468e-01	minor_base=A	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=2.532e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=45/70	total_cov=84/70
RA	326	.	NC_000913	2360550	0	C	.	bias_e_value=1606660	bias_p_value=0.34614	consensus_score=471.4	fisher_strand_p_value=0.107946	frequency=1	ks_quality_p_value=0.991246	major_base=.	major_cov=55/48	major_frequency=9.717e-01	minor_base=T	minor_cov=0/3	new_cov=55/48	polymorphism_frequency=9.717e-01	polymorphism_score=7.8	prediction=consensus	ref_cov=1/0	total_cov=56/51
RA	327	.	NC_000913	2392233	0	C	G	consensus_score=403.4	frequency=1	major_base=G	major_cov=58/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/49
RA	328	.	NC_000913	2423891	0	C	T	bias_e_value=4641430	bias_p_value=0.999952	consensus_score=420.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990237	major_base=T	major_cov=39/89	major_frequency=9.922e-01	minor_base=C	minor_cov=0/1	new_cov=39/89	polymorphism_frequency=9.922e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/1	total_cov=39/90
RA	329	.	NC_000913	2443447	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=428.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=67/59	major_frequency=9.921e-01	minor_base=C	minor_cov=1/0	new_cov=67/59	polymorphism_frequency=9.921e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/59
RA	330	.	NC_000913	2473392	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=458.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=74/64	major_frequency=9.928e-01	minor_base=C	minor_cov=1/0	new_cov=74/64	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=75/64
RA	331	.	NC_000913	2473397	1	.	T	bias_e_value=4641650	bias_p_value=1	consensus_score=392.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=68/62	major_frequency=9.848e-01	minor_base=.	minor_cov=1/1	new_cov=68/62	polymorphism_frequency=9.848e-01	polymorphism_score=-1.7	prediction=consensus	ref_cov=1/1	total_cov=69/64
RA	332	.	NC_000913	2477265	0	A	C	bias_e_value=0.00320945	bias_p_value=6.91445e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.7	fisher_strand_p_value=2.7304e-11	frequency=2.222e-01	ks_quality_p_value=1	major_base=A	major_cov=14/56	major_frequency=7.778e-01	minor_base=C	minor_cov=20/0	new_cov=20/0	polymorphism_frequency=2.222e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=14/56	total_cov=34/56
RA	333	.	NC_000913	2510609	0	C	T	consensus_score=399.4	frequency=1	major_base=T	major_cov=51/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/65
RA	334	.	NC_000913	2587112	0	C	T	bias_e_value=3743970	bias_p_value=0.806602	consensus_score=365.8	fisher_strand_p_value=0.446602	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=57/45	major_frequency=9.903e-01	minor_base=G	minor_cov=0/1	new_cov=57/45	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/46
RA	335	.	NC_000913	2630852	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=494.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=64/80	major_frequency=9.931e-01	minor_base=C	minor_cov=0/1	new_cov=64/80	polymorphism_frequency=9.931e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=64/82
RA	336	.	NC_000913	2647005	0	G	T	bias_e_value=3.25893	bias_p_value=7.02105e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=194.8	fisher_strand_p_value=3.88697e-08	frequency=2.843e-01	ks_quality_p_value=1	major_base=G	major_cov=39/34	major_frequency=7.157e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.843e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=39/34	total_cov=39/63
RA	337	.	NC_000913	2732992	0	G	A	consensus_score=519.7	frequency=1	major_base=A	major_cov=83/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=83/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=83/67
RA	338	.	NC_000913	2739259	1	.	A	bias_e_value=3916130	bias_p_value=0.843692	consensus_score=429.9	fisher_strand_p_value=0.495868	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=59/60	major_frequency=9.835e-01	minor_base=.	minor_cov=2/0	new_cov=59/60	polymorphism_frequency=9.835e-01	polymorphism_score=-1.5	prediction=consensus	ref_cov=2/0	total_cov=61/60
RA	339	.	NC_000913	2739269	0	C	.	consensus_score=556.8	frequency=1	major_base=.	major_cov=58/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/60
RA	340	.	NC_000913	2767442	0	C	A	bias_e_value=7.38567e-11	bias_p_value=1.59117e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=305.8	fisher_strand_p_value=3.66198e-19	frequency=2.754e-01	ks_quality_p_value=1	major_base=C	major_cov=21/79	major_frequency=7.246e-01	minor_base=A	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=2.754e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=21/79	total_cov=60/79
RA	341	.	NC_000913	2767444	0	C	A	bias_e_value=3.2497e-11	bias_p_value=7.00117e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=307.7	fisher_strand_p_value=1.58071e-19	frequency=2.806e-01	ks_quality_p_value=1	major_base=C	major_cov=21/79	major_frequency=7.194e-01	minor_base=A	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=2.806e-01	polymorphism_score=12.9	prediction=polymorphism	ref_cov=21/79	total_cov=60/79
RA	342	.	NC_000913	2767445	0	C	A	bias_e_value=1.04127e-14	bias_p_value=2.24333e-21	consensus_reject=FREQUENCY_CUTOFF	consensus_score=277.4	fisher_strand_p_value=4.27241e-23	frequency=3.165e-01	ks_quality_p_value=1	major_base=C	major_cov=16/79	major_frequency=6.835e-01	minor_base=A	minor_cov=44/0	new_cov=44/0	polymorphism_frequency=3.165e-01	polymorphism_score=32.2	prediction=polymorphism	ref_cov=16/79	total_cov=60/79
RA	343	.	NC_000913	2767447	0	C	A	bias_e_value=4.44749e-09	bias_p_value=9.5817e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=321.3	fisher_strand_p_value=2.4411e-17	frequency=2.465e-01	ks_quality_p_value=1	major_base=C	major_cov=25/82	major_frequency=7.535e-01	minor_base=A	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.465e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=25/82	total_cov=60/82
RA	344	.	NC_000913	2767449	0	C	A	bias_e_value=5.73896e-11	bias_p_value=1.2364e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=316.9	fisher_strand_p_value=2.8287e-19	frequency=2.676e-01	ks_quality_p_value=1	major_base=C	major_cov=22/82	major_frequency=7.324e-01	minor_base=A	minor_cov=38/0	new_cov=38/0	polymorphism_frequency=2.676e-01	polymorphism_score=14.2	prediction=polymorphism	ref_cov=22/82	total_cov=60/82
RA	345	.	NC_000913	2777982	0	A	.	bias_e_value=4573490	bias_p_value=0.985314	consensus_reject=FREQUENCY_CUTOFF	consensus_score=414.2	fisher_strand_p_value=0.848235	frequency=3.041e-01	ks_quality_p_value=0.982732	major_base=A	major_cov=30/89	major_frequency=6.959e-01	minor_base=.	minor_cov=12/40	new_cov=12/40	polymorphism_frequency=3.041e-01	polymorphism_score=224.2	prediction=polymorphism	ref_cov=30/89	total_cov=42/129
RA	346	.	NC_000913	2804133	0	C	T	bias_e_value=3596090	bias_p_value=0.774744	consensus_score=532.1	fisher_strand_p_value=0.409091	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=62/91	major_frequency=9.935e-01	minor_base=C	minor_cov=1/0	new_cov=62/91	polymorphism_frequency=9.935e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=63/91
RA	347	.	NC_000913	2814459	0	A	.	consensus_score=579.3	frequency=1	major_base=.	major_cov=68/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/56
RA	348	.	NC_000913	2814461	0	C	T	bias_e_value=2436880	bias_p_value=0.525002	consensus_score=413.8	fisher_strand_p_value=0.201941	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=68/54	major_frequency=9.839e-01	minor_base=G	minor_cov=0/2	new_cov=68/54	polymorphism_frequency=9.839e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/56
RA	349	.	NC_000913	2815937	0	G	T	bias_e_value=0.118858	bias_p_value=2.56069e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=243.7	fisher_strand_p_value=1.18821e-09	frequency=2.993e-01	ks_quality_p_value=1	major_base=G	major_cov=52/51	major_frequency=7.007e-01	minor_base=T	minor_cov=1/43	new_cov=1/43	polymorphism_frequency=2.993e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=52/51	total_cov=53/94
RA	350	.	NC_000913	2821955	0	C	A	bias_e_value=0.0144677	bias_p_value=3.11693e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=320.5	fisher_strand_p_value=1.31216e-10	frequency=2.467e-01	ks_quality_p_value=1	major_base=C	major_cov=52/61	major_frequency=7.533e-01	minor_base=A	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=2.467e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=52/61	total_cov=89/61
RA	351	.	NC_000913	2823288	0	C	T	consensus_score=379.8	frequency=1	major_base=T	major_cov=62/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/46
RA	352	.	NC_000913	2856087	0	G	T	bias_e_value=0.0559442	bias_p_value=1.20527e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=240.4	fisher_strand_p_value=5.39501e-10	frequency=3.032e-01	ks_quality_p_value=1	major_base=G	major_cov=48/60	major_frequency=6.968e-01	minor_base=T	minor_cov=0/47	new_cov=0/47	polymorphism_frequency=3.032e-01	polymorphism_score=12.6	prediction=polymorphism	ref_cov=48/60	total_cov=48/107
RA	353	.	NC_000913	2867455	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=525.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=91/62	major_frequency=9.935e-01	minor_base=C	minor_cov=1/0	new_cov=91/62	polymorphism_frequency=9.935e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=92/62
RA	354	.	NC_000913	2871153	0	T	G	consensus_score=402.7	frequency=1	major_base=G	major_cov=62/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/47
RA	355	.	NC_000913	2926543	0	C	T	consensus_score=520.4	frequency=1	major_base=T	major_cov=76/81	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/81	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/81
RA	356	.	NC_000913	2926544	0	C	T	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=522.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998694	major_base=T	major_cov=76/80	major_frequency=9.936e-01	minor_base=G	minor_cov=0/1	new_cov=76/80	polymorphism_frequency=9.936e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/81
RA	357	.	NC_000913	2926772	0	C	A	consensus_score=516.6	frequency=1	major_base=A	major_cov=79/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=79/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=79/68
RA	358	.	NC_000913	2981924	0	C	T	bias_e_value=3621170	bias_p_value=0.780147	consensus_score=449.6	fisher_strand_p_value=0.415385	frequency=1	ks_quality_p_value=0.999523	major_base=T	major_cov=76/53	major_frequency=9.923e-01	minor_base=C	minor_cov=0/1	new_cov=76/53	polymorphism_frequency=9.923e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/1	total_cov=76/54
RA	359	.	NC_000913	2982000	0	C	T	consensus_score=476.9	frequency=1	major_base=T	major_cov=86/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=86/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=86/49
RA	360	.	NC_000913	2990480	0	C	A	bias_e_value=2.97717e-05	bias_p_value=6.41403e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=306.1	fisher_strand_p_value=2.12528e-13	frequency=3.100e-01	ks_quality_p_value=1	major_base=C	major_cov=75/63	major_frequency=6.900e-01	minor_base=A	minor_cov=62/0	new_cov=62/0	polymorphism_frequency=3.100e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=75/63	total_cov=137/63
RA	361	.	NC_000913	3010831	0	C	A	bias_e_value=0.000135922	bias_p_value=2.9283e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=276.0	fisher_strand_p_value=1.02361e-12	frequency=2.770e-01	ks_quality_p_value=1	major_base=C	major_cov=45/62	major_frequency=7.230e-01	minor_base=A	minor_cov=41/0	new_cov=41/0	polymorphism_frequency=2.770e-01	polymorphism_score=10.5	prediction=polymorphism	ref_cov=45/62	total_cov=86/63
RA	362	.	NC_000913	3032307	0	C	T	bias_e_value=3.03598e-14	bias_p_value=6.54073e-21	consensus_reject=FREQUENCY_CUTOFF	consensus_score=262.6	fisher_strand_p_value=1.27211e-22	frequency=3.036e-01	ks_quality_p_value=1	major_base=C	major_cov=29/88	major_frequency=6.964e-01	minor_base=T	minor_cov=51/0	new_cov=51/0	polymorphism_frequency=3.036e-01	polymorphism_score=66.2	prediction=polymorphism	ref_cov=29/88	total_cov=80/88
RA	363	.	NC_000913	3040842	0	G	A	consensus_score=381.4	frequency=1	major_base=A	major_cov=71/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/47
RA	364	.	NC_000913	3040843	0	G	A	consensus_score=416.0	frequency=1	major_base=A	major_cov=71/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/47
RA	365	.	NC_000913	3043360	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=623.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=98/86	major_frequency=9.892e-01	minor_base=C	minor_cov=1/1	new_cov=98/86	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=100/89
RA	366	.	NC_000913	3054886	0	G	T	bias_e_value=7.01862e-05	bias_p_value=1.51209e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=342.1	fisher_strand_p_value=5.1621e-13	frequency=2.160e-01	ks_quality_p_value=1	major_base=G	major_cov=46/81	major_frequency=7.840e-01	minor_base=T	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=2.160e-01	polymorphism_score=20.5	prediction=polymorphism	ref_cov=46/81	total_cov=81/81
RA	367	.	NC_000913	3054894	0	G	T	bias_e_value=3.03844e-05	bias_p_value=6.54603e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=259.7	fisher_strand_p_value=2.17053e-13	frequency=2.671e-01	ks_quality_p_value=1	major_base=G	major_cov=28/79	major_frequency=7.329e-01	minor_base=T	minor_cov=36/3	new_cov=36/3	polymorphism_frequency=2.671e-01	polymorphism_score=24.8	prediction=polymorphism	ref_cov=28/79	total_cov=64/82
RA	368	.	NC_000913	3071412	0	C	T	consensus_score=522.6	frequency=1	major_base=T	major_cov=72/82	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/82	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/82
RA	369	.	NC_000913	3089109	0	A	T	bias_e_value=2664480	bias_p_value=0.574036	consensus_score=372.7	fisher_strand_p_value=0.234115	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=56/51	major_frequency=9.817e-01	minor_base=G	minor_cov=0/2	new_cov=56/51	polymorphism_frequency=9.817e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/53
RA	370	.	NC_000913	3132532	0	G	A	bias_e_value=3983530	bias_p_value=0.858214	consensus_score=682.5	fisher_strand_p_value=0.517216	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=119/81	major_frequency=9.901e-01	minor_base=G	minor_cov=2/0	new_cov=119/81	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=121/81
RA	371	.	NC_000913	3157420	0	C	A	bias_e_value=2.39098e-15	bias_p_value=5.15114e-22	consensus_reject=FREQUENCY_CUTOFF	consensus_score=648.5	fisher_strand_p_value=9.53795e-24	frequency=2.115e-01	ks_quality_p_value=1	major_base=C	major_cov=73/147	major_frequency=7.885e-01	minor_base=A	minor_cov=59/0	new_cov=59/0	polymorphism_frequency=2.115e-01	polymorphism_score=23.5	prediction=polymorphism	ref_cov=73/147	total_cov=132/148
RA	372	.	NC_000913	3161616	0	G	A	bias_e_value=4641560	bias_p_value=0.99998	consensus_score=650.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.993752	major_base=A	major_cov=107/89	major_frequency=9.949e-01	minor_base=C	minor_cov=1/0	new_cov=107/89	polymorphism_frequency=9.949e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=108/89
RA	373	.	NC_000913	3167566	0	C	T	consensus_score=755.9	frequency=1	major_base=T	major_cov=121/93	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=121/93	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=121/93
RA	374	.	NC_000913	3181243	0	G	T	bias_e_value=2.68733e-19	bias_p_value=5.7896e-26	consensus_reject=FREQUENCY_CUTOFF	consensus_score=671.7	fisher_strand_p_value=9.15231e-28	frequency=2.182e-01	ks_quality_p_value=1	major_base=G	major_cov=157/58	major_frequency=7.818e-01	minor_base=T	minor_cov=0/60	new_cov=0/60	polymorphism_frequency=2.182e-01	polymorphism_score=10.6	prediction=polymorphism	ref_cov=157/58	total_cov=157/118
RA	375	.	NC_000913	3191376	0	G	T	bias_e_value=2.89395e-15	bias_p_value=6.23474e-22	consensus_reject=FREQUENCY_CUTOFF	consensus_score=638.0	fisher_strand_p_value=1.15861e-23	frequency=2.565e-01	ks_quality_p_value=1	major_base=G	major_cov=130/99	major_frequency=7.435e-01	minor_base=T	minor_cov=0/79	new_cov=0/79	polymorphism_frequency=2.565e-01	polymorphism_score=17.8	prediction=polymorphism	ref_cov=130/99	total_cov=130/178
RA	376	.	NC_000913	3207549	0	G	.	bias_e_value=2560420	bias_p_value=0.551618	consensus_score=1181.5	fisher_strand_p_value=0.251606	frequency=1	ks_quality_p_value=0.870477	major_base=.	major_cov=119/136	major_frequency=9.884e-01	minor_base=G	minor_cov=0/3	new_cov=119/136	polymorphism_frequency=9.884e-01	polymorphism_score=4.3	prediction=consensus	ref_cov=0/3	total_cov=119/139
RA	377	.	NC_000913	3226224	0	G	T	bias_e_value=3.44853e-10	bias_p_value=7.42953e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=453.4	fisher_strand_p_value=1.7743e-18	frequency=2.500e-01	ks_quality_p_value=1	major_base=G	major_cov=102/72	major_frequency=7.500e-01	minor_base=T	minor_cov=0/58	new_cov=0/58	polymorphism_frequency=2.500e-01	polymorphism_score=13.5	prediction=polymorphism	ref_cov=102/72	total_cov=102/130
RA	378	.	NC_000913	3242343	0	C	T	bias_e_value=3619370	bias_p_value=0.77976	consensus_score=759.8	fisher_strand_p_value=0.414747	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=127/89	major_frequency=9.954e-01	minor_base=C	minor_cov=0/1	new_cov=127/89	polymorphism_frequency=9.954e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=127/90
RA	379	.	NC_000913	3267978	0	C	A	bias_e_value=3.85567e-12	bias_p_value=8.30667e-19	consensus_reject=FREQUENCY_CUTOFF	consensus_score=625.9	fisher_strand_p_value=1.7875e-20	frequency=2.185e-01	ks_quality_p_value=1	major_base=C	major_cov=75/136	major_frequency=7.815e-01	minor_base=A	minor_cov=58/1	new_cov=58/1	polymorphism_frequency=2.185e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=75/136	total_cov=133/137
RA	380	.	NC_000913	3268247	0	G	T	bias_e_value=1.65359e-24	bias_p_value=3.56251e-31	consensus_reject=FREQUENCY_CUTOFF	consensus_score=877.0	fisher_strand_p_value=4.72276e-33	frequency=2.175e-01	ks_quality_p_value=1	major_base=G	major_cov=199/96	major_frequency=7.825e-01	minor_base=T	minor_cov=0/82	new_cov=0/82	polymorphism_frequency=2.175e-01	polymorphism_score=23.5	prediction=polymorphism	ref_cov=199/96	total_cov=199/178
RA	381	.	NC_000913	3269935	0	A	C	bias_e_value=1.50754e-07	bias_p_value=3.24786e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=382.4	fisher_strand_p_value=9.11516e-16	frequency=2.159e-01	ks_quality_p_value=1	major_base=A	major_cov=100/107	major_frequency=7.841e-01	minor_base=C	minor_cov=57/0	new_cov=57/0	polymorphism_frequency=2.159e-01	polymorphism_score=23.1	prediction=polymorphism	ref_cov=100/107	total_cov=159/107
RA	382	.	NC_000913	3269948	0	T	C	bias_e_value=2.79537e-09	bias_p_value=6.02235e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=440.1	fisher_strand_p_value=1.5159e-17	frequency=2.324e-01	ks_quality_p_value=1	major_base=T	major_cov=79/106	major_frequency=7.676e-01	minor_base=C	minor_cov=56/0	new_cov=56/0	polymorphism_frequency=2.324e-01	polymorphism_score=29.1	prediction=polymorphism	ref_cov=79/106	total_cov=135/109
RA	383	.	NC_000913	3283227	0	G	T	bias_e_value=6.03265e-10	bias_p_value=1.29968e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=437.6	fisher_strand_p_value=3.14691e-18	frequency=2.402e-01	ks_quality_p_value=1	major_base=G	major_cov=100/55	major_frequency=7.598e-01	minor_base=T	minor_cov=0/49	new_cov=0/49	polymorphism_frequency=2.402e-01	polymorphism_score=24.9	prediction=polymorphism	ref_cov=100/55	total_cov=100/104
RA	384	.	NC_000913	3329743	0	G	T	consensus_score=444.7	frequency=1	major_base=T	major_cov=65/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/63
RA	385	.	NC_000913	3388041	0	T	G	bias_e_value=3785380	bias_p_value=0.815524	consensus_score=634.2	fisher_strand_p_value=0.464286	frequency=1	ks_quality_p_value=0.986125	major_base=G	major_cov=90/77	major_frequency=9.940e-01	minor_base=T	minor_cov=0/1	new_cov=90/77	polymorphism_frequency=9.940e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/1	total_cov=90/78
RA	386	.	NC_000913	3401345	0	G	T	bias_e_value=6.28568e-05	bias_p_value=1.35419e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=245.3	fisher_strand_p_value=4.60508e-13	frequency=3.129e-01	ks_quality_p_value=1	major_base=G	major_cov=57/44	major_frequency=6.871e-01	minor_base=T	minor_cov=0/46	new_cov=0/46	polymorphism_frequency=3.129e-01	polymorphism_score=22.2	prediction=polymorphism	ref_cov=57/44	total_cov=57/90
RA	387	.	NC_000913	3432105	0	C	T	bias_e_value=2611930	bias_p_value=0.562716	consensus_score=682.5	fisher_strand_p_value=0.226406	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=103/92	major_frequency=9.898e-01	minor_base=G	minor_cov=0/2	new_cov=103/92	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=103/94
RA	388	.	NC_000913	3433680	0	C	A	bias_e_value=0.00106013	bias_p_value=2.28395e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=390.2	fisher_strand_p_value=8.62641e-12	frequency=2.139e-01	ks_quality_p_value=1	major_base=C	major_cov=68/79	major_frequency=7.861e-01	minor_base=A	minor_cov=40/0	new_cov=40/0	polymorphism_frequency=2.139e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=68/79	total_cov=108/80
RA	389	.	NC_000913	3443961	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=572.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=87/74	major_frequency=9.938e-01	minor_base=C	minor_cov=1/0	new_cov=87/74	polymorphism_frequency=9.938e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=89/74
RA	390	.	NC_000913	3443980	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=563.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=86/76	major_frequency=9.939e-01	minor_base=C	minor_cov=1/0	new_cov=86/76	polymorphism_frequency=9.939e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=87/76
RA	391	.	NC_000913	3451695	0	C	A	bias_e_value=4.87093e-11	bias_p_value=1.0494e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=399.4	fisher_strand_p_value=2.39167e-19	frequency=2.457e-01	ks_quality_p_value=1	major_base=C	major_cov=36/96	major_frequency=7.543e-01	minor_base=A	minor_cov=43/0	new_cov=43/0	polymorphism_frequency=2.457e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=36/96	total_cov=79/96
RA	392	.	NC_000913	3452022	0	G	A	consensus_score=532.2	frequency=1	major_base=A	major_cov=68/79	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/79	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/79
RA	393	.	NC_000913	3452218	0	G	A	bias_e_value=3702340	bias_p_value=0.797633	consensus_score=445.0	fisher_strand_p_value=0.43609	frequency=1	ks_quality_p_value=0.998975	major_base=A	major_cov=75/57	major_frequency=9.925e-01	minor_base=G	minor_cov=0/1	new_cov=75/57	polymorphism_frequency=9.925e-01	polymorphism_score=-6.3	prediction=consensus	ref_cov=0/1	total_cov=75/58
RA	394	.	NC_000913	3457378	0	C	T	consensus_score=539.0	frequency=1	major_base=T	major_cov=73/82	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/82	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/82
RA	395	.	NC_000913	3458245	0	A	C	consensus_score=522.7	frequency=1	major_base=C	major_cov=43/97	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/97	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/97
RA	396	.	NC_000913	3474425	0	T	G	bias_e_value=2412760	bias_p_value=0.519807	consensus_score=449.9	fisher_strand_p_value=0.19871	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=69/54	major_frequency=9.840e-01	minor_base=T	minor_cov=0/2	new_cov=69/54	polymorphism_frequency=9.840e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/2	total_cov=69/56
RA	397	.	NC_000913	3485491	0	C	A	bias_e_value=0.000316624	bias_p_value=6.82137e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=412.3	fisher_strand_p_value=2.45984e-12	frequency=2.057e-01	ks_quality_p_value=1	major_base=C	major_cov=49/90	major_frequency=7.943e-01	minor_base=A	minor_cov=35/1	new_cov=35/1	polymorphism_frequency=2.057e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=49/90	total_cov=84/92
RA	398	.	NC_000913	3494679	0	C	T	consensus_score=429.9	frequency=1	major_base=T	major_cov=66/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/55
RA	399	.	NC_000913	3525566	0	T	C	consensus_score=490.8	frequency=1	major_base=C	major_cov=73/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/62
RA	400	.	NC_000913	3537999	0	C	T	consensus_score=369.5	frequency=1	major_base=T	major_cov=60/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/50
RA	401	.	NC_000913	3555047	0	G	T	bias_e_value=2282640	bias_p_value=0.491772	consensus_score=465.1	fisher_strand_p_value=0.181818	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=76/55	major_frequency=9.850e-01	minor_base=G	minor_cov=0/2	new_cov=76/55	polymorphism_frequency=9.850e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=77/57
RA	402	.	NC_000913	3560455	1	.	G	consensus_score=545.0	frequency=1	major_base=G	major_cov=77/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/68
RA	403	.	NC_000913	3606891	0	C	T	bias_e_value=2487600	bias_p_value=0.535931	consensus_score=373.2	fisher_strand_p_value=0.208845	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=60/49	major_frequency=9.820e-01	minor_base=G	minor_cov=0/2	new_cov=60/49	polymorphism_frequency=9.820e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/51
RA	404	.	NC_000913	3617379	0	T	A	consensus_score=257.7	frequency=1	major_base=A	major_cov=34/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/40
RA	405	.	NC_000913	3624545	0	T	A	bias_e_value=4065580	bias_p_value=0.87589	consensus_score=576.8	fisher_strand_p_value=0.566871	frequency=1	ks_quality_p_value=0.961684	major_base=A	major_cov=69/103	major_frequency=9.829e-01	minor_base=T	minor_cov=2/1	new_cov=69/103	polymorphism_frequency=9.829e-01	polymorphism_score=3.1	prediction=consensus	ref_cov=2/1	total_cov=71/104
RA	406	.	NC_000913	3634092	0	G	T	bias_e_value=2.51661e-09	bias_p_value=5.42179e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=619.0	fisher_strand_p_value=1.36104e-17	frequency=2.070e-01	ks_quality_p_value=1	major_base=G	major_cov=124/102	major_frequency=7.930e-01	minor_base=T	minor_cov=0/59	new_cov=0/59	polymorphism_frequency=2.070e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=124/102	total_cov=124/161
RA	407	.	NC_000913	3647428	0	C	T	consensus_score=559.7	frequency=1	major_base=T	major_cov=81/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=81/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=81/77
RA	408	.	NC_000913	3669715	0	G	T	bias_e_value=1.15717e-06	bias_p_value=2.49302e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=294.5	fisher_strand_p_value=7.43461e-15	frequency=2.988e-01	ks_quality_p_value=1	major_base=G	major_cov=67/48	major_frequency=7.012e-01	minor_base=T	minor_cov=0/49	new_cov=0/49	polymorphism_frequency=2.988e-01	polymorphism_score=16.3	prediction=polymorphism	ref_cov=67/48	total_cov=67/97
RA	409	.	NC_000913	3679508	0	C	T	consensus_score=522.4	frequency=1	major_base=T	major_cov=50/103	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/103	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/103
RA	410	.	NC_000913	3686705	0	G	A	consensus_score=441.7	frequency=1	major_base=A	major_cov=66/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/64
RA	411	.	NC_000913	3707947	0	C	A	consensus_score=662.3	frequency=1	major_base=A	major_cov=124/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=124/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=124/70
RA	412	.	NC_000913	3712407	0	G	A	bias_e_value=3370480	bias_p_value=0.726137	consensus_score=607.1	fisher_strand_p_value=0.358382	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=61/111	major_frequency=9.942e-01	minor_base=C	minor_cov=1/0	new_cov=61/111	polymorphism_frequency=9.942e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/111
RA	413	.	NC_000913	3722230	0	G	T	bias_e_value=2.55781e-13	bias_p_value=5.51055e-20	consensus_reject=FREQUENCY_CUTOFF	consensus_score=610.3	fisher_strand_p_value=1.11908e-21	frequency=2.410e-01	ks_quality_p_value=1	major_base=G	major_cov=125/86	major_frequency=7.590e-01	minor_base=T	minor_cov=0/67	new_cov=0/67	polymorphism_frequency=2.410e-01	polymorphism_score=17.1	prediction=polymorphism	ref_cov=125/86	total_cov=125/154
RA	414	.	NC_000913	3725176	0	T	G	consensus_score=531.6	frequency=1	major_base=G	major_cov=72/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/69
RA	415	.	NC_000913	3729955	0	G	A	bias_e_value=3782150	bias_p_value=0.814828	consensus_score=522.2	fisher_strand_p_value=0.456954	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=68/82	major_frequency=9.934e-01	minor_base=C	minor_cov=1/0	new_cov=68/82	polymorphism_frequency=9.934e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/82
RA	416	.	NC_000913	3729956	0	G	A	bias_e_value=2475260	bias_p_value=0.533272	consensus_score=518.1	fisher_strand_p_value=0.207152	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=67/82	major_frequency=9.868e-01	minor_base=G	minor_cov=2/0	new_cov=67/82	polymorphism_frequency=9.868e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=69/82
RA	417	.	NC_000913	3741871	0	G	T	bias_e_value=1.9612e-05	bias_p_value=4.22522e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=274.1	fisher_strand_p_value=1.38028e-13	frequency=2.893e-01	ks_quality_p_value=1	major_base=G	major_cov=64/49	major_frequency=7.107e-01	minor_base=T	minor_cov=0/46	new_cov=0/46	polymorphism_frequency=2.893e-01	polymorphism_score=21.1	prediction=polymorphism	ref_cov=64/49	total_cov=64/95
RA	418	.	NC_000913	3768435	0	C	A	bias_e_value=3.34161e-16	bias_p_value=7.19919e-23	consensus_reject=FREQUENCY_CUTOFF	consensus_score=659.0	fisher_strand_p_value=1.28532e-24	frequency=2.308e-01	ks_quality_p_value=1	major_base=C	major_cov=85/145	major_frequency=7.692e-01	minor_base=A	minor_cov=69/0	new_cov=69/0	polymorphism_frequency=2.308e-01	polymorphism_score=18.0	prediction=polymorphism	ref_cov=85/145	total_cov=154/145
RA	419	.	NC_000913	3769447	0	G	A	consensus_score=558.0	frequency=1	major_base=A	major_cov=92/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=92/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=92/69
RA	420	.	NC_000913	3773040	0	G	.	consensus_score=676.4	frequency=1	major_base=.	major_cov=86/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=86/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=86/57
RA	421	.	NC_000913	3773041	0	G	.	consensus_score=676.4	frequency=1	major_base=.	major_cov=86/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=86/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=86/57
RA	422	.	NC_000913	3783983	0	G	A	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=595.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998755	major_base=A	major_cov=85/84	major_frequency=9.883e-01	minor_base=.	minor_cov=1/1	new_cov=85/84	polymorphism_frequency=9.883e-01	polymorphism_score=-0.1	prediction=consensus	ref_cov=1/0	total_cov=87/85
RA	423	.	NC_000913	3789274	0	C	A	bias_e_value=0.337667	bias_p_value=7.27471e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=437.9	fisher_strand_p_value=3.55654e-09	frequency=2.030e-01	ks_quality_p_value=1	major_base=C	major_cov=80/77	major_frequency=7.970e-01	minor_base=A	minor_cov=39/1	new_cov=39/1	polymorphism_frequency=2.030e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=80/77	total_cov=119/78
RA	424	.	NC_000913	3815883	1	.	C	bias_e_value=1217710	bias_p_value=0.262344	consensus_score=596.1	fisher_strand_p_value=0.0723445	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=71/83	major_frequency=9.277e-01	minor_base=.	minor_cov=9/3	new_cov=71/83	polymorphism_frequency=9.277e-01	polymorphism_score=31.2	prediction=consensus	ref_cov=9/3	total_cov=83/86
RA	425	.	NC_000913	3843750	0	C	A	bias_e_value=0.000172627	bias_p_value=3.71909e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=398.0	fisher_strand_p_value=1.31139e-12	frequency=2.556e-01	ks_quality_p_value=1	major_base=C	major_cov=92/74	major_frequency=7.444e-01	minor_base=A	minor_cov=57/0	new_cov=57/0	polymorphism_frequency=2.556e-01	polymorphism_score=15.8	prediction=polymorphism	ref_cov=92/74	total_cov=149/74
RA	426	.	NC_000913	3865885	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=506.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=75/62	major_frequency=9.928e-01	minor_base=A	minor_cov=1/0	new_cov=75/62	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=76/63
RA	427	.	NC_000913	3896780	0	C	A	bias_e_value=1.22619e-10	bias_p_value=2.6417e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=574.2	fisher_strand_p_value=6.15321e-19	frequency=2.016e-01	ks_quality_p_value=1	major_base=C	major_cov=72/126	major_frequency=7.984e-01	minor_base=A	minor_cov=50/0	new_cov=50/0	polymorphism_frequency=2.016e-01	polymorphism_score=23.9	prediction=polymorphism	ref_cov=72/126	total_cov=122/128
RA	428	.	NC_000913	3899195	0	C	T	consensus_score=705.1	frequency=1	major_base=T	major_cov=95/107	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=95/107	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=95/107
RA	429	.	NC_000913	3903234	0	G	A	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=460.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998876	major_base=A	major_cov=70/56	major_frequency=9.921e-01	minor_base=C	minor_cov=1/0	new_cov=70/56	polymorphism_frequency=9.921e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/56
RA	430	.	NC_000913	3911533	0	C	A	bias_e_value=1.31221e-15	bias_p_value=2.82703e-22	consensus_reject=FREQUENCY_CUTOFF	consensus_score=300.7	fisher_strand_p_value=5.176e-24	frequency=3.656e-01	ks_quality_p_value=1	major_base=C	major_cov=37/81	major_frequency=6.344e-01	minor_base=A	minor_cov=68/0	new_cov=68/0	polymorphism_frequency=3.656e-01	polymorphism_score=34.0	prediction=polymorphism	ref_cov=37/81	total_cov=105/81
RA	431	.	NC_000913	3961662	0	G	T	bias_e_value=3262830	bias_p_value=0.702945	consensus_score=380.6	fisher_strand_p_value=0.336449	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=71/35	major_frequency=9.907e-01	minor_base=G	minor_cov=0/1	new_cov=71/35	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=71/36
RA	432	.	NC_000913	3965174	0	G	A	consensus_score=377.1	frequency=1	major_base=A	major_cov=55/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/55
RA	433	.	NC_000913	3968683	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=416.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=57/65	major_frequency=9.919e-01	minor_base=C	minor_cov=0/1	new_cov=57/65	polymorphism_frequency=9.919e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/66
RA	434	.	NC_000913	3969748	0	T	C	consensus_score=507.4	frequency=1	major_base=C	major_cov=64/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/71
RA	435	.	NC_000913	3999664	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=348.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/57	major_frequency=9.903e-01	minor_base=C	minor_cov=0/1	new_cov=45/57	polymorphism_frequency=9.903e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=45/58
RA	436	.	NC_000913	4009698	0	G	A	bias_e_value=3798710	bias_p_value=0.818395	consensus_score=415.3	fisher_strand_p_value=0.461538	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=53/63	major_frequency=9.915e-01	minor_base=C	minor_cov=1/0	new_cov=53/63	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/63
RA	437	.	NC_000913	4017197	0	C	T	bias_e_value=3584960	bias_p_value=0.772345	consensus_score=669.8	fisher_strand_p_value=0.406417	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=111/75	major_frequency=9.947e-01	minor_base=C	minor_cov=0/1	new_cov=111/75	polymorphism_frequency=9.947e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=111/76
RA	438	.	NC_000913	4084903	0	T	G	bias_e_value=2735120	bias_p_value=0.589257	consensus_score=437.7	fisher_strand_p_value=0.244762	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=61/62	major_frequency=9.762e-01	minor_base=T	minor_cov=0/3	new_cov=61/62	polymorphism_frequency=9.762e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/3	total_cov=61/65
RA	439	.	NC_000913	4092703	0	A	G	consensus_score=582.8	frequency=1	major_base=G	major_cov=82/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=82/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=82/73
RA	440	.	NC_000913	4113225	0	G	T	bias_e_value=5.24379e-05	bias_p_value=1.12972e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=511.0	fisher_strand_p_value=3.8174e-13	frequency=2.019e-01	ks_quality_p_value=1	major_base=G	major_cov=100/66	major_frequency=7.981e-01	minor_base=T	minor_cov=1/41	new_cov=1/41	polymorphism_frequency=2.019e-01	polymorphism_score=12.3	prediction=polymorphism	ref_cov=100/66	total_cov=101/107
RA	441	.	NC_000913	4113851	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=474.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=91/53	major_frequency=9.931e-01	minor_base=C	minor_cov=1/0	new_cov=91/53	polymorphism_frequency=9.931e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=92/53
RA	442	.	NC_000913	4143377	0	C	T	bias_e_value=3769990	bias_p_value=0.812209	consensus_score=392.6	fisher_strand_p_value=0.453704	frequency=1	ks_quality_p_value=0.999827	major_base=T	major_cov=48/59	major_frequency=9.907e-01	minor_base=C	minor_cov=1/0	new_cov=48/59	polymorphism_frequency=9.907e-01	polymorphism_score=-6.1	prediction=consensus	ref_cov=1/0	total_cov=49/59
RA	443	.	NC_000913	4193996	0	T	G	bias_e_value=3874570	bias_p_value=0.83474	consensus_score=436.7	fisher_strand_p_value=0.483333	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=57/62	major_frequency=9.917e-01	minor_base=A	minor_cov=1/0	new_cov=57/62	polymorphism_frequency=9.917e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/62
RA	444	.	NC_000913	4213310	0	G	T	bias_e_value=9.53779e-11	bias_p_value=2.05483e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=390.0	fisher_strand_p_value=4.75772e-19	frequency=2.613e-01	ks_quality_p_value=1	major_base=G	major_cov=96/51	major_frequency=7.387e-01	minor_base=T	minor_cov=0/52	new_cov=0/52	polymorphism_frequency=2.613e-01	polymorphism_score=21.8	prediction=polymorphism	ref_cov=96/51	total_cov=96/104
RA	445	.	NC_000913	4215347	0	T	A	bias_e_value=3937590	bias_p_value=0.848317	consensus_score=718.8	fisher_strand_p_value=0.502525	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=115/96	major_frequency=9.906e-01	minor_base=C	minor_cov=2/0	new_cov=115/96	polymorphism_frequency=9.906e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=117/96
RA	446	.	NC_000913	4223638	0	T	C	bias_e_value=1985230	bias_p_value=0.427699	consensus_score=568.7	fisher_strand_p_value=0.146402	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=58/96	major_frequency=9.872e-01	minor_base=A	minor_cov=2/0	new_cov=58/96	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/96
RA	447	.	NC_000913	4240987	0	G	T	bias_e_value=0.000301979	bias_p_value=6.50585e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=287.9	fisher_strand_p_value=2.34192e-12	frequency=2.240e-01	ks_quality_p_value=1	major_base=G	major_cov=68/29	major_frequency=7.760e-01	minor_base=T	minor_cov=0/28	new_cov=0/28	polymorphism_frequency=2.240e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=68/29	total_cov=68/57
RA	448	.	NC_000913	4261040	0	C	A	bias_e_value=9.2158e-15	bias_p_value=1.98546e-21	consensus_reject=FREQUENCY_CUTOFF	consensus_score=578.5	fisher_strand_p_value=3.77236e-23	frequency=2.235e-01	ks_quality_p_value=1	major_base=C	major_cov=64/134	major_frequency=7.765e-01	minor_base=A	minor_cov=57/0	new_cov=57/0	polymorphism_frequency=2.235e-01	polymorphism_score=16.9	prediction=polymorphism	ref_cov=64/134	total_cov=121/134
RA	449	.	NC_000913	4293781	0	G	A	bias_e_value=3863270	bias_p_value=0.832305	consensus_score=419.3	fisher_strand_p_value=0.48	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=65/59	major_frequency=9.920e-01	minor_base=G	minor_cov=0/1	new_cov=65/59	polymorphism_frequency=9.920e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=65/60
RA	450	.	NC_000913	4293782	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=441.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=64/60	major_frequency=9.920e-01	minor_base=C	minor_cov=1/0	new_cov=64/60	polymorphism_frequency=9.920e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=65/60
RA	451	.	NC_000913	4296191	0	A	C	bias_e_value=523671	bias_p_value=0.11282	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.3	fisher_strand_p_value=0.0238144	frequency=2.400e-01	ks_quality_p_value=1	major_base=A	major_cov=17/21	major_frequency=7.600e-01	minor_base=C	minor_cov=10/2	new_cov=10/2	polymorphism_frequency=2.400e-01	polymorphism_score=19.7	prediction=polymorphism	ref_cov=17/21	total_cov=27/23
RA	452	.	NC_000913	4296268	0	T	C	bias_e_value=4465690	bias_p_value=0.962091	consensus_reject=FREQUENCY_CUTOFF	consensus_score=90.8	fisher_strand_p_value=0.737599	frequency=2.712e-01	ks_quality_p_value=1	major_base=T	major_cov=31/12	major_frequency=7.288e-01	minor_base=C	minor_cov=13/3	new_cov=13/3	polymorphism_frequency=2.712e-01	polymorphism_score=36.0	prediction=polymorphism	ref_cov=31/12	total_cov=44/15
RA	453	.	NC_000913	4296380	1	.	C	bias_e_value=4424010	bias_p_value=0.953111	consensus_score=291.2	fisher_strand_p_value=0.732973	frequency=1	ks_quality_p_value=0.968429	major_base=C	major_cov=63/32	major_frequency=9.048e-01	minor_base=T	minor_cov=6/4	new_cov=63/32	polymorphism_frequency=9.048e-01	polymorphism_score=17.6	prediction=consensus	ref_cov=3/0	total_cov=72/36
RA	454	.	NC_000913	4296380	2	.	G	bias_e_value=4069860	bias_p_value=0.876813	consensus_score=361.4	fisher_strand_p_value=0.549286	frequency=1	ks_quality_p_value=0.995249	major_base=G	major_cov=69/36	major_frequency=9.722e-01	minor_base=.	minor_cov=3/0	new_cov=69/36	polymorphism_frequency=9.722e-01	polymorphism_score=2.9	prediction=consensus	ref_cov=3/0	total_cov=72/36
RA	455	.	NC_000913	4307435	0	C	A	bias_e_value=0.0764681	bias_p_value=1.64743e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=278.9	fisher_strand_p_value=7.48388e-10	frequency=2.378e-01	ks_quality_p_value=1	major_base=C	major_cov=51/58	major_frequency=7.622e-01	minor_base=A	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.378e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=51/58	total_cov=85/58
RA	456	.	NC_000913	4325644	0	C	T	bias_e_value=3274230	bias_p_value=0.705401	consensus_score=411.6	fisher_strand_p_value=0.33871	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/82	major_frequency=9.919e-01	minor_base=C	minor_cov=1/0	new_cov=41/82	polymorphism_frequency=9.919e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=42/82
RA	457	.	NC_000913	4360965	0	C	A	bias_e_value=1.20263e-21	bias_p_value=2.59096e-28	consensus_reject=FREQUENCY_CUTOFF	consensus_score=525.2	fisher_strand_p_value=3.76862e-30	frequency=2.652e-01	ks_quality_p_value=1	major_base=C	major_cov=37/132	major_frequency=7.348e-01	minor_base=A	minor_cov=61/0	new_cov=61/0	polymorphism_frequency=2.652e-01	polymorphism_score=29.2	prediction=polymorphism	ref_cov=37/132	total_cov=98/132
RA	458	.	NC_000913	4400254	0	C	T	bias_e_value=3814510	bias_p_value=0.821799	consensus_score=641.9	fisher_strand_p_value=0.465969	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=102/88	major_frequency=9.948e-01	minor_base=G	minor_cov=0/1	new_cov=102/88	polymorphism_frequency=9.948e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=102/89
RA	459	.	NC_000913	4425418	0	C	A	bias_e_value=0.000155429	bias_p_value=3.34858e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=273.8	fisher_strand_p_value=1.17623e-12	frequency=2.662e-01	ks_quality_p_value=1	major_base=C	major_cov=39/63	major_frequency=7.338e-01	minor_base=A	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=2.662e-01	polymorphism_score=10.4	prediction=polymorphism	ref_cov=39/63	total_cov=76/63
RA	460	.	NC_000913	4427822	0	C	A	bias_e_value=4.33171e-10	bias_p_value=9.33226e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=299.3	fisher_strand_p_value=2.2412e-18	frequency=3.511e-01	ks_quality_p_value=1	major_base=C	major_cov=52/70	major_frequency=6.489e-01	minor_base=A	minor_cov=66/0	new_cov=66/0	polymorphism_frequency=3.511e-01	polymorphism_score=17.9	prediction=polymorphism	ref_cov=52/70	total_cov=118/70
RA	461	.	NC_000913	4473900	0	C	T	consensus_score=491.2	frequency=1	major_base=T	major_cov=78/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=78/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=78/65
RA	462	.	NC_000913	4475493	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_score=723.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=104/94	major_frequency=9.900e-01	minor_base=A	minor_cov=1/1	new_cov=104/94	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=105/95
RA	463	.	NC_000913	4510238	0	T	G	bias_e_value=54021.7	bias_p_value=0.0116385	consensus_score=647.3	fisher_strand_p_value=0.00155939	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=105/80	major_frequency=9.585e-01	minor_base=T	minor_cov=0/8	new_cov=105/80	polymorphism_frequency=9.585e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/8	total_cov=107/88
RA	464	.	NC_000913	4546601	0	C	T	consensus_score=616.7	frequency=1	major_base=T	major_cov=86/94	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=86/94	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=86/94
RA	465	.	NC_000913	4630651	0	G	T	bias_e_value=3672870	bias_p_value=0.791285	consensus_score=578.0	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=0.99886	major_base=T	major_cov=71/96	major_frequency=9.940e-01	minor_base=C	minor_cov=1/0	new_cov=71/96	polymorphism_frequency=9.940e-01	polymorphism_score=-6.7	prediction=consensus	ref_cov=0/0	total_cov=72/96
RA	466	.	NC_000913	4630657	0	G	T	consensus_score=592.8	frequency=1	major_base=T	major_cov=76/96	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=76/96	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=76/96
RA	467	.	NC_000913	4635268	0	C	T	bias_e_value=2194190	bias_p_value=0.472716	consensus_score=645.3	fisher_strand_p_value=0.170839	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=110/76	major_frequency=9.894e-01	minor_base=G	minor_cov=0/2	new_cov=110/76	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=112/78
RA	468	.	NC_000913	4636925	0	G	C	consensus_score=470.0	frequency=1	major_base=C	major_cov=58/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/67
RA	469	.	NC_000913	4638240	0	G	A	bias_e_value=3932160	bias_p_value=0.847146	consensus_score=524.1	fisher_strand_p_value=0.500827	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=83/71	major_frequency=9.872e-01	minor_base=C	minor_cov=2/0	new_cov=83/71	polymorphism_frequency=9.872e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=85/71
MC	470	.	NC_000913	257908	258683	768	0	left_inside_cov=1	left_outside_cov=169	right_inside_cov=1	right_outside_cov=167
MC	471	.	NC_000913	1196277	1211436	0	0	left_inside_cov=44	left_outside_cov=50	right_inside_cov=49	right_outside_cov=50
MC	472	.	NC_000913	1632749	1633404	134	462	left_inside_cov=47	left_outside_cov=51	right_inside_cov=47	right_outside_cov=51
MC	473	.	NC_000913	1978503	1979278	767	0	left_inside_cov=1	left_outside_cov=193	right_inside_cov=5	right_outside_cov=196
MC	474	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=95	right_inside_cov=1	right_outside_cov=97
MC	475	.	NC_000913	3349206	3366538	0	985	left_inside_cov=0	left_outside_cov=150	right_inside_cov=44	right_outside_cov=50
MC	476	.	NC_000913	3423813	3424452	419	214	left_inside_cov=48	left_outside_cov=50	right_inside_cov=46	right_outside_cov=51
MC	477	.	NC_000913	4037985	4039188	703	489	left_inside_cov=48	left_outside_cov=51	right_inside_cov=49	right_outside_cov=50
JC	478	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=125	coverage_plus=93	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=294	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=297	max_left_minus=297	max_left_plus=242	max_min_left=149	max_min_left_minus=149	max_min_left_plus=141	max_min_right=148	max_min_right_minus=148	max_min_right_plus=142	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=294	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.55	new_junction_read_count=222	polymorphism_frequency=1.000e+00	pos_hash_score=103	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=218
JC	479	.	NC_000913	7214	-1	NC_000913	7756	1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.472e-02	junction_possible_overlap_registers=286	key=NC_000913__7214__-1__NC_000913__7748__1__8____300__300__0__0	max_left=290	max_left_minus=290	max_left_plus=50	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=35	max_min_right_minus=35	max_min_right_plus=35	max_pos_hash_score=574	max_right=35	max_right_minus=35	max_right_plus=35	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.472e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=120	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=120	side_2_redundant=0	total_non_overlap_reads=3
JC	480	.	NC_000913	173932	-1	NC_000913	174389	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.396e-02	junction_possible_overlap_registers=283	key=NC_000913__173932__-1__NC_000913__174378__1__11____300__300__0__0	max_left=179	max_left_minus=179	max_left_plus=163	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=71	max_min_right_minus=71	max_min_right_plus=71	max_pos_hash_score=568	max_right=71	max_right_minus=71	max_right_plus=71	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=3.396e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=11	side_1_possible_overlap_registers=294	side_1_read_count=118	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=114	side_2_redundant=0	total_non_overlap_reads=3
JC	481	.	NC_000913	253746	-1	NC_000913	253936	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.334e-02	junction_possible_overlap_registers=285	key=NC_000913__253746__-1__NC_000913__253927__1__9____300__300__0__0	max_left=135	max_left_minus=135	max_left_plus=135	max_min_left=135	max_min_left_minus=135	max_min_left_plus=135	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=572	max_right=261	max_right_minus=261	max_right_plus=138	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.334e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=126	side_2_redundant=0	total_non_overlap_reads=3
JC	482	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=63	coverage_plus=98	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=289	max_left_minus=289	max_left_plus=287	max_min_left=143	max_min_left_minus=104	max_min_left_plus=143	max_min_right=146	max_min_right_minus=143	max_min_right_plus=146	max_pos_hash_score=574	max_right=291	max_right_minus=291	max_right_plus=284	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.19	new_junction_read_count=166	polymorphism_frequency=9.971e-01	pos_hash_score=84	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=161
JC	483	.	NC_000913	257908	1	NC_000913	557941	1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.828e-02	junction_possible_overlap_registers=294	key=NC_000913__257908__1__NC_000913__557941__1__0____300__300__1__0	max_left=234	max_left_minus=234	max_left_plus=56	max_min_left=56	max_min_left_minus=0	max_min_left_plus=56	max_min_right=117	max_min_right_minus=117	max_min_right_plus=0	max_pos_hash_score=590	max_right=244	max_right_minus=117	max_right_plus=244	neg_log10_pos_hash_p_value=10.3	new_junction_coverage=0.06	new_junction_read_count=8	polymorphism_frequency=3.828e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.41	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=201	side_2_redundant=0	total_non_overlap_reads=8
JC	484	.	NC_000913	257908	1	NC_000913	1303437	1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=1.056e-01	junction_possible_overlap_registers=294	key=NC_000913__257908__1__NC_000913__1303437__1__0____300__300__1__0	max_left=284	max_left_minus=284	max_left_plus=148	max_min_left=148	max_min_left_minus=66	max_min_left_plus=148	max_min_right=109	max_min_right_minus=109	max_min_right_plus=0	max_pos_hash_score=590	max_right=293	max_right_minus=277	max_right_plus=293	neg_log10_pos_hash_p_value=7.3	new_junction_coverage=0.10	new_junction_read_count=15	polymorphism_frequency=1.056e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=14
JC	485	.	NC_000913	273955	1	NC_000913	674956	-1	0	alignment_overlap=0	coverage_minus=8	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=8.466e-02	junction_possible_overlap_registers=294	key=NC_000913__273955__1__NC_000913__674956__-1__0____300__300__1__0	max_left=263	max_left_minus=263	max_left_plus=201	max_min_left=142	max_min_left_minus=141	max_min_left_plus=142	max_min_right=135	max_min_right_minus=135	max_min_right_plus=99	max_pos_hash_score=590	max_right=294	max_right_minus=294	max_right_plus=294	neg_log10_pos_hash_p_value=6.6	new_junction_coverage=0.11	new_junction_read_count=16	polymorphism_frequency=8.466e-02	pos_hash_score=14	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.21	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=173	side_2_redundant=0	total_non_overlap_reads=16
JC	486	.	NC_000913	279163	1	NC_000913	1303437	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=3.053e-02	junction_possible_overlap_registers=294	key=NC_000913__279163__1__NC_000913__1303437__1__0____300__300__1__0	max_left=31	max_left_minus=23	max_left_plus=31	max_min_left=31	max_min_left_minus=23	max_min_left_plus=31	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=590	max_right=293	max_right_minus=277	max_right_plus=293	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=3.053e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=4
JC	487	.	NC_000913	291401	-1	NC_000913	1303445	-1	0	alignment_overlap=1	coverage_minus=4	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=7.322e-02	junction_possible_overlap_registers=293	key=NC_000913__291402__-1__NC_000913__1303445__-1__1____300__300__1__0	max_left=115	max_left_minus=115	max_left_plus=86	max_min_left=115	max_min_left_minus=115	max_min_left_plus=86	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=588	max_right=297	max_right_minus=297	max_right_plus=285	neg_log10_pos_hash_p_value=7.9	new_junction_coverage=0.07	new_junction_read_count=10	polymorphism_frequency=7.322e-02	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=1	side_2_possible_overlap_registers=294	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=10
JC	488	.	NC_000913	366907	1	NC_000913	366910	-1	0	alignment_overlap=9	coverage_minus=86	coverage_plus=71	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=285	key=NC_000913__366907__1__NC_000913__366919__-1__9____300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=281	max_min_left=145	max_min_left_minus=145	max_min_left_plus=134	max_min_right=143	max_min_right_minus=143	max_min_right_plus=121	max_pos_hash_score=572	max_right=272	max_right_minus=272	max_right_plus=271	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.15	new_junction_read_count=159	polymorphism_frequency=9.761e-01	pos_hash_score=83	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.05	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=157
JC	489	.	NC_000913	557949	-1	NC_000913	1979270	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=2.392e-02	junction_possible_overlap_registers=294	key=NC_000913__557949__-1__NC_000913__1979270__-1__0____300__300__0__1	max_left=186	max_left_minus=70	max_left_plus=186	max_min_left=108	max_min_left_minus=70	max_min_left_plus=108	max_min_right=114	max_min_right_minus=0	max_min_right_plus=114	max_pos_hash_score=590	max_right=230	max_right_minus=230	max_right_plus=205	neg_log10_pos_hash_p_value=10.9	new_junction_coverage=0.03	new_junction_read_count=5	polymorphism_frequency=2.392e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.43	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=204	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	490	.	NC_000913	663375	-1	NC_000913	663718	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.833e-02	junction_possible_overlap_registers=282	key=NC_000913__663375__-1__NC_000913__663706__1__12____300__300__0__0	max_left=186	max_left_minus=186	max_left_plus=181	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=106	max_min_right_minus=106	max_min_right_plus=106	max_pos_hash_score=566	max_right=106	max_right_minus=106	max_right_plus=106	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=2.833e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=137	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.04	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=143	side_2_redundant=0	total_non_overlap_reads=4
JC	491	.	NC_000913	674956	-1	NC_000913	2066159	1	0	alignment_overlap=3	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.283e-02	junction_possible_overlap_registers=291	key=NC_000913__674956__-1__NC_000913__2066156__1__3____300__300__0__0	max_left=291	max_left_minus=291	max_left_plus=291	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=3	max_pos_hash_score=584	max_right=15	max_right_minus=15	max_right_plus=3	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=2.283e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.21	side_1_overlap=3	side_1_possible_overlap_registers=294	side_1_read_count=173	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=4
JC	492	.	NC_000913	676550	-1	NC_000913	687851	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.073e-02	junction_possible_overlap_registers=294	key=NC_000913__676550__-1__NC_000913__687851__1__0____300__300__0__1	max_left=273	max_left_minus=206	max_left_plus=273	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=144	max_min_right_minus=144	max_min_right_plus=132	max_pos_hash_score=590	max_right=144	max_right_minus=144	max_right_plus=132	neg_log10_pos_hash_p_value=10.9	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=2.073e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.32	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=189	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	493	.	NC_000913	696506	-1	NC_000913	697057	1	-45	alignment_overlap=-45	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.442e-02	junction_possible_overlap_registers=249	key=NC_000913__696506__-1__NC_000913__697057__1__-45__AAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATT__300__300__0__0	max_left=238	max_left_minus=71	max_left_plus=238	max_min_left=77	max_min_left_minus=71	max_min_left_plus=77	max_min_right=13	max_min_right_minus=0	max_min_right_plus=13	max_pos_hash_score=500	max_right=133	max_right_minus=133	max_right_plus=133	neg_log10_pos_hash_p_value=10.5	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=4.442e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.95	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=136	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.83	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=AAATTGGTTTTGAATTTGCCGAACATATTCGATACATTCAGAATT
JC	494	.	NC_000913	699409	1	NC_000913	3270072	1	-10	alignment_overlap=-10	coverage_minus=0	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=3.933e-02	junction_possible_overlap_registers=284	key=NC_000913__699409__1__NC_000913__3270072__1__-10__CAACAATCTG__300__300__0__0	max_left=35	max_left_minus=0	max_left_plus=35	max_min_left=35	max_min_left_minus=0	max_min_left_plus=35	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=570	max_right=278	max_right_minus=0	max_right_plus=278	neg_log10_pos_hash_p_value=10.0	new_junction_coverage=0.05	new_junction_read_count=7	polymorphism_frequency=3.933e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=122	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.62	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=232	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=CAACAATCTG
JC	495	.	NC_000913	732239	-1	NC_000913	3622029	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.980e-02	junction_possible_overlap_registers=282	key=NC_000913__732239__-1__NC_000913__3622017__1__12____300__300__0__0	max_left=264	max_left_minus=139	max_left_plus=264	max_min_left=139	max_min_left_minus=139	max_min_left_plus=0	max_min_right=64	max_min_right_minus=0	max_min_right_plus=64	max_pos_hash_score=566	max_right=153	max_right_minus=153	max_right_plus=64	neg_log10_pos_hash_p_value=10.6	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=5.980e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=128	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=4
JC	496	.	NC_000913	732239	-1	NC_000913	3765020	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.683e-02	junction_possible_overlap_registers=282	key=NC_000913__732239__-1__NC_000913__3765008__1__12____300__300__0__0	max_left=264	max_left_minus=139	max_left_plus=264	max_min_left=139	max_min_left_minus=139	max_min_left_plus=0	max_min_right=64	max_min_right_minus=0	max_min_right_plus=64	max_pos_hash_score=566	max_right=153	max_right_minus=153	max_right_plus=64	neg_log10_pos_hash_p_value=10.6	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=5.683e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=128	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.07	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=10	side_2_redundant=0	total_non_overlap_reads=4
JC	497	.	NC_000913	780629	-1	NC_000913	780919	1	0	alignment_overlap=76	coverage_minus=9	coverage_plus=12	flanking_left=300	flanking_right=300	frequency=1.911e-01	junction_possible_overlap_registers=218	key=NC_000913__780629__-1__NC_000913__780843__1__76____300__300__0__0	max_left=177	max_left_minus=168	max_left_plus=177	max_min_left=105	max_min_left_minus=59	max_min_left_plus=105	max_min_right=94	max_min_right_minus=94	max_min_right_plus=92	max_pos_hash_score=438	max_right=189	max_right_minus=170	max_right_plus=189	neg_log10_pos_hash_p_value=3.9	new_junction_coverage=0.21	new_junction_read_count=22	polymorphism_frequency=1.911e-01	pos_hash_score=18	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=76	side_1_possible_overlap_registers=294	side_1_read_count=146	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.74	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=78	side_2_redundant=0	total_non_overlap_reads=21
JC	498	.	NC_000913	780629	-1	NC_000913	781223	1	0	alignment_overlap=76	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.596e-02	junction_possible_overlap_registers=218	key=NC_000913__780629__-1__NC_000913__781147__1__76____300__300__0__0	max_left=57	max_left_minus=57	max_left_plus=42	max_min_left=7	max_min_left_minus=0	max_min_left_plus=7	max_min_right=42	max_min_right_minus=42	max_min_right_plus=41	max_pos_hash_score=438	max_right=42	max_right_minus=42	max_right_plus=42	neg_log10_pos_hash_p_value=9.0	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=3.596e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.07	side_1_overlap=76	side_1_possible_overlap_registers=294	side_1_read_count=153	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.95	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=101	side_2_redundant=0	total_non_overlap_reads=4
JC	499	.	NC_000913	781016	-1	NC_000913	2521253	1	-33	alignment_overlap=-33	coverage_minus=3	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=6.954e-02	junction_possible_overlap_registers=261	key=NC_000913__781016__-1__NC_000913__2521253__1__-33__TCCTGAATGATTAAGGCAGCATAATCCCGCAAG__300__300__0__0	max_left=241	max_left_minus=238	max_left_plus=241	max_min_left=116	max_min_left_minus=0	max_min_left_plus=116	max_min_right=28	max_min_right_minus=28	max_min_right_plus=23	max_pos_hash_score=524	max_right=151	max_right_minus=28	max_right_plus=151	neg_log10_pos_hash_p_value=9.5	new_junction_coverage=0.06	new_junction_read_count=7	polymorphism_frequency=6.954e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.57	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=130	side_2_redundant=0	total_non_overlap_reads=7	unique_read_sequence=TCCTGAATGATTAAGGCAGCATAATCCCGCAAG
JC	500	.	NC_000913	781222	-1	NC_000913	781653	1	0	alignment_overlap=76	coverage_minus=11	coverage_plus=8	flanking_left=300	flanking_right=300	frequency=1.985e-01	junction_possible_overlap_registers=218	key=NC_000913__781222__-1__NC_000913__781577__1__76____300__300__0__0	max_left=165	max_left_minus=165	max_left_plus=141	max_min_left=70	max_min_left_minus=65	max_min_left_plus=70	max_min_right=81	max_min_right_minus=59	max_min_right_plus=81	max_pos_hash_score=438	max_right=214	max_right_minus=214	max_right_plus=155	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.19	new_junction_read_count=20	polymorphism_frequency=1.985e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=76	side_1_possible_overlap_registers=294	side_1_read_count=118	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.70	side_2_overlap=0	side_2_possible_overlap_registers=218	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=19
JC	501	.	NC_000913	781322	-1	NC_000913	781655	1	0	alignment_overlap=20	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.664e-02	junction_possible_overlap_registers=274	key=NC_000913__781322__-1__NC_000913__781635__1__20____300__300__0__0	max_left=240	max_left_minus=240	max_left_plus=167	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=31	max_min_right_minus=31	max_min_right_plus=20	max_pos_hash_score=550	max_right=31	max_right_minus=31	max_right_plus=20	neg_log10_pos_hash_p_value=11.1	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.664e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.80	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=114	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.85	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=113	side_2_redundant=0	total_non_overlap_reads=3
JC	502	.	NC_000913	781369	1	NC_000913	2521006	-1	-2	alignment_overlap=-2	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.262e-02	junction_possible_overlap_registers=292	key=NC_000913__781369__1__NC_000913__2521006__-1__-2__GG__300__300__0__0	max_left=117	max_left_minus=117	max_left_plus=117	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=76	max_min_right_minus=76	max_min_right_plus=62	max_pos_hash_score=586	max_right=76	max_right_minus=76	max_right_plus=62	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.262e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=160	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=GG
JC	503	.	NC_000913	781369	1	NC_000913	2521127	-1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.584e-02	junction_possible_overlap_registers=293	key=NC_000913__781369__1__NC_000913__2521127__-1__-1__G__300__300__0__0	max_left=117	max_left_minus=117	max_left_plus=117	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=77	max_min_right_minus=77	max_min_right_plus=63	max_pos_hash_score=588	max_right=77	max_right_minus=77	max_right_plus=63	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.584e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=126	side_2_redundant=0	total_non_overlap_reads=3	unique_read_sequence=G
JC	504	.	NC_000913	781577	1	NC_000913	2521006	-1	-3	alignment_overlap=-3	coverage_minus=6	coverage_plus=10	flanking_left=300	flanking_right=300	frequency=1.140e-01	junction_possible_overlap_registers=291	key=NC_000913__781577__1__NC_000913__2521006__-1__-3__GAG__300__300__0__0	max_left=290	max_left_minus=231	max_left_plus=290	max_min_left=39	max_min_left_minus=0	max_min_left_plus=39	max_min_right=142	max_min_right_minus=142	max_min_right_plus=62	max_pos_hash_score=584	max_right=268	max_right_minus=142	max_right_plus=268	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.12	new_junction_read_count=17	polymorphism_frequency=1.140e-01	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.75	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=160	side_2_redundant=0	total_non_overlap_reads=16	unique_read_sequence=GAG
JC	505	.	NC_000913	781577	1	NC_000913	2521128	-1	-1	alignment_overlap=-1	coverage_minus=4	coverage_plus=10	flanking_left=300	flanking_right=300	frequency=1.140e-01	junction_possible_overlap_registers=293	key=NC_000913__781577__1__NC_000913__2521128__-1__-1__G__300__300__0__0	max_left=290	max_left_minus=231	max_left_plus=290	max_min_left=125	max_min_left_minus=0	max_min_left_plus=125	max_min_right=119	max_min_right_minus=58	max_min_right_plus=119	max_pos_hash_score=588	max_right=169	max_right_minus=58	max_right_plus=169	neg_log10_pos_hash_p_value=7.9	new_junction_coverage=0.11	new_junction_read_count=15	polymorphism_frequency=1.140e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.75	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=14	unique_read_sequence=G
JC	506	.	NC_000913	781763	1	NC_000913	2817698	1	0	alignment_overlap=16	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.767e-02	junction_possible_overlap_registers=278	key=NC_000913__781763__1__NC_000913__2817682__1__16____300__300__0__0	max_left=172	max_left_minus=172	max_left_plus=52	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=22	max_min_right_minus=22	max_min_right_plus=19	max_pos_hash_score=558	max_right=22	max_right_minus=22	max_right_plus=19	neg_log10_pos_hash_p_value=11.2	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=2.767e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=16	side_1_possible_overlap_registers=294	side_1_read_count=126	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.20	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=162	side_2_redundant=0	total_non_overlap_reads=3
JC	507	.	NC_000913	819180	-1	NC_000913	819524	1	0	alignment_overlap=6	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.684e-02	junction_possible_overlap_registers=288	key=NC_000913__819180__-1__NC_000913__819518__1__6____300__300__0__0	max_left=229	max_left_minus=229	max_left_plus=170	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=124	max_min_right_minus=65	max_min_right_plus=124	max_pos_hash_score=578	max_right=149	max_right_minus=65	max_right_plus=149	neg_log10_pos_hash_p_value=11.4	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.684e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=6	side_1_possible_overlap_registers=294	side_1_read_count=121	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=99	side_2_redundant=0	total_non_overlap_reads=3
JC	508	.	NC_000913	925857	1	NC_000913	1097175	-1	0	alignment_overlap=46	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=7.472e-02	junction_possible_overlap_registers=248	key=NC_000913__925857__1__NC_000913__1097221__-1__46____300__300__0__0	max_left=40	max_left_minus=40	max_left_plus=40	max_min_left=40	max_min_left_minus=40	max_min_left_plus=40	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=498	max_right=239	max_right_minus=228	max_right_plus=239	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.05	new_junction_read_count=6	polymorphism_frequency=7.472e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=46	side_1_possible_overlap_registers=294	side_1_read_count=124	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.36	side_2_overlap=0	side_2_possible_overlap_registers=248	side_2_read_count=44	side_2_redundant=0	total_non_overlap_reads=6
JC	509	.	NC_000913	925857	1	NC_000913	1097356	-1	0	alignment_overlap=46	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.862e-02	junction_possible_overlap_registers=248	key=NC_000913__925857__1__NC_000913__1097402__-1__46____300__300__0__0	max_left=52	max_left_minus=52	max_left_plus=52	max_min_left=52	max_min_left_minus=52	max_min_left_plus=52	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=498	max_right=229	max_right_minus=209	max_right_plus=229	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=5.862e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=46	side_1_possible_overlap_registers=294	side_1_read_count=124	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.46	side_2_overlap=0	side_2_possible_overlap_registers=248	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=5
JC	510	.	NC_000913	1049778	1	NC_000913	1303445	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.308e-02	junction_possible_overlap_registers=294	key=NC_000913__1049778__1__NC_000913__1303445__-1__0____300__300__0__0	max_left=38	max_left_minus=2	max_left_plus=38	max_min_left=38	max_min_left_minus=2	max_min_left_plus=38	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=286	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.308e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=3
JC	511	.	NC_000913	1050545	-1	NC_000913	1303437	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=5.926e-02	junction_possible_overlap_registers=294	key=NC_000913__1050545__-1__NC_000913__1303437__1__0____300__300__0__0	max_left=131	max_left_minus=66	max_left_plus=131	max_min_left=131	max_min_left_minus=66	max_min_left_plus=131	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=590	max_right=293	max_right_minus=277	max_right_plus=293	neg_log10_pos_hash_p_value=9.7	new_junction_coverage=0.06	new_junction_read_count=8	polymorphism_frequency=5.926e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=8
JC	512	.	NC_000913	1096826	-1	NC_000913	1469240	-1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=3.521e-02	junction_possible_overlap_registers=293	key=NC_000913__1096827__-1__NC_000913__1469240__-1__1____300__300__0__1	max_left=292	max_left_minus=104	max_left_plus=292	max_min_left=104	max_min_left_minus=104	max_min_left_plus=0	max_min_right=134	max_min_right_minus=0	max_min_right_plus=134	max_pos_hash_score=588	max_right=195	max_right_minus=195	max_right_plus=134	neg_log10_pos_hash_p_value=10.8	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=3.521e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=137	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	513	.	NC_000913	1134476	-1	NC_000913	1134847	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.005e-02	junction_possible_overlap_registers=284	key=NC_000913__1134476__-1__NC_000913__1134837__1__10____300__300__0__0	max_left=61	max_left_minus=61	max_left_plus=61	max_min_left=61	max_min_left_minus=61	max_min_left_plus=61	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=570	max_right=125	max_right_minus=125	max_right_plus=125	neg_log10_pos_hash_p_value=10.6	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=3.005e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.78	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=111	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.09	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=151	side_2_redundant=0	total_non_overlap_reads=4
JC	514	.	NC_000913	1216985	1	NC_000913	1469240	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=2.703e-02	junction_possible_overlap_registers=294	key=NC_000913__1216985__1__NC_000913__1469240__-1__0____300__300__0__1	max_left=269	max_left_minus=269	max_left_plus=165	max_min_left=86	max_min_left_minus=0	max_min_left_plus=86	max_min_right=135	max_min_right_minus=31	max_min_right_plus=135	max_pos_hash_score=590	max_right=213	max_right_minus=31	max_right_plus=213	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.03	new_junction_read_count=5	polymorphism_frequency=2.703e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.26	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=180	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	515	.	NC_000913	1286906	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=2	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.058e-01	junction_possible_overlap_registers=274	key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=258	max_left_minus=258	max_left_plus=258	max_min_left=4	max_min_left_minus=0	max_min_left_plus=4	max_min_right=36	max_min_right_minus=21	max_min_right_plus=36	max_pos_hash_score=550	max_right=276	max_right_minus=21	max_right_plus=276	neg_log10_pos_hash_p_value=10.4	new_junction_coverage=0.06	new_junction_read_count=8	polymorphism_frequency=1.058e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.50	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.52	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=69	side_2_redundant=0	total_non_overlap_reads=7
JC	516	.	NC_000913	1287084	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=2	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=9.580e-02	junction_possible_overlap_registers=274	key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=159	max_left_minus=74	max_left_plus=159	max_min_left=49	max_min_left_minus=49	max_min_left_plus=22	max_min_right=119	max_min_right_minus=1	max_min_right_plus=119	max_pos_hash_score=550	max_right=276	max_right_minus=230	max_right_plus=276	neg_log10_pos_hash_p_value=9.3	new_junction_coverage=0.06	new_junction_read_count=8	polymorphism_frequency=9.580e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.62	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=88	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.52	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=69	side_2_redundant=0	total_non_overlap_reads=7
JC	517	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=99	coverage_plus=79	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=294	max_left_minus=284	max_left_plus=294	max_min_left=146	max_min_left_minus=120	max_min_left_plus=146	max_min_right=142	max_min_right_minus=139	max_min_right_plus=142	max_pos_hash_score=582	max_right=295	max_right_minus=292	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.29	new_junction_read_count=182	polymorphism_frequency=9.973e-01	pos_hash_score=97	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=4	side_1_possible_overlap_registers=294	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=178
JC	518	.	NC_000913	1303445	-1	NC_000913	1979270	-1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=10	flanking_left=300	flanking_right=300	frequency=1.361e-01	junction_possible_overlap_registers=294	key=NC_000913__1303445__-1__NC_000913__1979270__-1__0____300__300__0__1	max_left=298	max_left_minus=286	max_left_plus=298	max_min_left=147	max_min_left_minus=106	max_min_left_plus=147	max_min_right=136	max_min_right_minus=136	max_min_right_plus=115	max_pos_hash_score=590	max_right=294	max_right_minus=231	max_right_plus=294	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.14	new_junction_read_count=20	polymorphism_frequency=1.361e-01	pos_hash_score=18	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=127	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=20
JC	519	.	NC_000913	1315811	-1	NC_000913	1979270	-1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.532e-02	junction_possible_overlap_registers=293	key=NC_000913__1315812__-1__NC_000913__1979270__-1__1____300__300__0__1	max_left=279	max_left_minus=279	max_left_plus=22	max_min_left=89	max_min_left_minus=89	max_min_left_plus=22	max_min_right=104	max_min_right_minus=104	max_min_right_plus=0	max_pos_hash_score=588	max_right=277	max_right_minus=208	max_right_plus=277	neg_log10_pos_hash_p_value=10.8	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=2.532e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=154	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	520	.	NC_000913	1390231	-1	NC_000913	1470516	-1	0	alignment_overlap=0	coverage_minus=7	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=7.921e-02	junction_possible_overlap_registers=294	key=NC_000913__1390231__-1__NC_000913__1470516__-1__0____300__300__0__1	max_left=204	max_left_minus=204	max_left_plus=0	max_min_left=100	max_min_left_minus=100	max_min_left_plus=0	max_min_right=95	max_min_right_minus=95	max_min_right_plus=0	max_pos_hash_score=590	max_right=231	max_right_minus=231	max_right_plus=0	neg_log10_pos_hash_p_value=10.9	new_junction_coverage=0.06	new_junction_read_count=8	polymorphism_frequency=7.921e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=7
JC	521	.	NC_000913	1396044	1	NC_000913	1743499	-1	0	alignment_overlap=0	coverage_minus=92	coverage_plus=81	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1396044__1__NC_000913__1743499__-1__0____300__300__1__0	max_left=293	max_left_minus=288	max_left_plus=293	max_min_left=125	max_min_left_minus=125	max_min_left_plus=119	max_min_right=149	max_min_right_minus=146	max_min_right_plus=149	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=297	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.24	new_junction_read_count=177	polymorphism_frequency=1.000e+00	pos_hash_score=86	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=173
JC	522	.	NC_000913	1397238	-1	NC_000913	1743496	1	0	alignment_overlap=0	coverage_minus=72	coverage_plus=62	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1397238__-1__NC_000913__1743496__1__0____300__300__1__0	max_left=294	max_left_minus=275	max_left_plus=294	max_min_left=149	max_min_left_minus=144	max_min_left_plus=149	max_min_right=145	max_min_right_minus=141	max_min_right_plus=145	max_pos_hash_score=590	max_right=297	max_right_minus=296	max_right_plus=297	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.95	new_junction_read_count=136	polymorphism_frequency=1.000e+00	pos_hash_score=79	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=134
JC	523	.	NC_000913	1411899	1	NC_000913	1434958	-1	0	alignment_overlap=26	coverage_minus=8	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=8.501e-02	junction_possible_overlap_registers=268	key=NC_000913__1411899__1__NC_000913__1434984__-1__26____300__300__0__0	max_left=193	max_left_minus=193	max_left_plus=187	max_min_left=102	max_min_left_minus=102	max_min_left_plus=37	max_min_right=137	max_min_right_minus=137	max_min_right_plus=135	max_pos_hash_score=538	max_right=266	max_right_minus=266	max_right_plus=248	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.11	new_junction_read_count=14	polymorphism_frequency=8.501e-02	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=26	side_1_possible_overlap_registers=294	side_1_read_count=154	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=268	side_2_read_count=161	side_2_redundant=0	total_non_overlap_reads=13
JC	524	.	NC_000913	1413850	1	NC_000913	1651548	-1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=2.532e-02	junction_possible_overlap_registers=294	key=NC_000913__1413850__1__NC_000913__1651548__-1__0____300__300__0__1	max_left=196	max_left_minus=196	max_left_plus=0	max_min_left=122	max_min_left_minus=122	max_min_left_plus=0	max_min_right=100	max_min_right_minus=100	max_min_right_plus=0	max_pos_hash_score=590	max_right=225	max_right_minus=225	max_right_plus=0	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=2.532e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.08	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=154	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	525	.	NC_000913	1469240	-1	NC_000913	1649673	1	0	alignment_overlap=1	coverage_minus=70	coverage_plus=50	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__1469240__-1__NC_000913__1649672__1__1____300__300__1__0	max_left=293	max_left_minus=291	max_left_plus=293	max_min_left=146	max_min_left_minus=146	max_min_left_plus=129	max_min_right=146	max_min_right_minus=136	max_min_right_plus=146	max_pos_hash_score=588	max_right=295	max_right_minus=295	max_right_plus=291	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.85	new_junction_read_count=121	polymorphism_frequency=1.000e+00	pos_hash_score=64	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=120
JC	526	.	NC_000913	1649677	-1	NC_000913	1651548	-1	0	alignment_overlap=0	coverage_minus=62	coverage_plus=55	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1649677__-1__NC_000913__1651548__-1__0____300__300__0__1	max_left=295	max_left_minus=286	max_left_plus=295	max_min_left=147	max_min_left_minus=147	max_min_left_plus=145	max_min_right=141	max_min_right_minus=138	max_min_right_plus=141	max_pos_hash_score=590	max_right=289	max_right_minus=289	max_right_plus=271	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.85	new_junction_read_count=121	polymorphism_frequency=1.000e+00	pos_hash_score=72	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=289	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=117
JC	527	.	NC_000913	1665769	-1	NC_000913	1666152	1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.591e-02	junction_possible_overlap_registers=286	key=NC_000913__1665769__-1__NC_000913__1666144__1__8____300__300__0__0	max_left=289	max_left_minus=289	max_left_plus=76	max_min_left=76	max_min_left_minus=76	max_min_left_plus=76	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_pos_hash_score=574	max_right=192	max_right_minus=192	max_right_plus=192	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.591e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=127	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=102	side_2_redundant=0	total_non_overlap_reads=3
JC	528	.	NC_000913	1907448	1	NC_000913	2290113	-1	0	alignment_overlap=4	coverage_minus=46	coverage_plus=80	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__1907444__1__NC_000913__2290113__-1__4____300__300__0__1	max_left=287	max_left_minus=281	max_left_plus=287	max_min_left=144	max_min_left_minus=115	max_min_left_plus=144	max_min_right=147	max_min_right_minus=147	max_min_right_plus=142	max_pos_hash_score=582	max_right=289	max_right_minus=289	max_right_plus=283	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.90	new_junction_read_count=127	polymorphism_frequency=1.000e+00	pos_hash_score=73	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=286	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=4	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=126
JC	529	.	NC_000913	1907451	-1	NC_000913	2101749	1	0	alignment_overlap=0	coverage_minus=92	coverage_plus=71	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__1907451__-1__NC_000913__2101749__1__0____300__300__0__1	max_left=296	max_left_minus=287	max_left_plus=296	max_min_left=146	max_min_left_minus=146	max_min_left_plus=138	max_min_right=139	max_min_right_minus=137	max_min_right_plus=139	max_pos_hash_score=590	max_right=283	max_right_minus=266	max_right_plus=283	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.17	new_junction_read_count=168	polymorphism_frequency=9.764e-01	pos_hash_score=79	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=4	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=163
JC	530	.	NC_000913	1939386	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=5.625e-02	junction_possible_overlap_registers=294	key=NC_000913__1939386__-1__NC_000913__2290113__-1__0____300__300__0__1	max_left=258	max_left_minus=258	max_left_plus=149	max_min_left=149	max_min_left_minus=0	max_min_left_plus=149	max_min_right=42	max_min_right_minus=42	max_min_right_plus=0	max_pos_hash_score=590	max_right=272	max_right_minus=42	max_right_plus=272	neg_log10_pos_hash_p_value=10.9	new_junction_coverage=0.06	new_junction_read_count=9	polymorphism_frequency=5.625e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=151	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=8
JC	531	.	NC_000913	1978502	-1	NC_000913	1979279	1	0	alignment_overlap=8	coverage_minus=101	coverage_plus=88	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__1978502__-1__NC_000913__1979271__1__8____300__300__0__0	max_left=290	max_left_minus=290	max_left_plus=286	max_min_left=144	max_min_left_minus=132	max_min_left_plus=144	max_min_right=143	max_min_right_minus=135	max_min_right_plus=143	max_pos_hash_score=574	max_right=291	max_right_minus=291	max_right_plus=286	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.37	new_junction_read_count=191	polymorphism_frequency=9.975e-01	pos_hash_score=88	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=189
JC	532	.	NC_000913	2066159	1	NC_000913	3138533	1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=4.301e-02	junction_possible_overlap_registers=294	key=NC_000913__2066159__1__NC_000913__3138533__1__0____300__300__0__0	max_left=12	max_left_minus=12	max_left_plus=12	max_min_left=12	max_min_left_minus=12	max_min_left_plus=12	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=590	max_right=296	max_right_minus=296	max_right_plus=293	neg_log10_pos_hash_p_value=10.3	new_junction_coverage=0.06	new_junction_read_count=8	polymorphism_frequency=4.301e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=178	side_2_redundant=0	total_non_overlap_reads=8
JC	533	.	NC_000913	2066159	1	NC_000913	3206580	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.843e-02	junction_possible_overlap_registers=291	key=NC_000913__2066156__1__NC_000913__3206580__1__3____300__300__0__0	max_left=15	max_left_minus=3	max_left_plus=15	max_min_left=15	max_min_left_minus=3	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=584	max_right=294	max_right_minus=294	max_right_plus=290	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=1.843e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.88	side_2_overlap=3	side_2_possible_overlap_registers=294	side_2_read_count=269	side_2_redundant=0	total_non_overlap_reads=5
JC	534	.	NC_000913	2066159	1	NC_000913	3906168	1	0	alignment_overlap=6	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=4.503e-02	junction_possible_overlap_registers=288	key=NC_000913__2066155__1__NC_000913__3906166__1__6____300__300__0__0	max_left=12	max_left_minus=12	max_left_plus=9	max_min_left=12	max_min_left_minus=12	max_min_left_plus=9	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=578	max_right=285	max_right_minus=282	max_right_plus=285	neg_log10_pos_hash_p_value=10.7	new_junction_coverage=0.04	new_junction_read_count=6	polymorphism_frequency=4.503e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=4	side_2_possible_overlap_registers=292	side_2_read_count=129	side_2_redundant=0	total_non_overlap_reads=6
JC	535	.	NC_000913	2066159	1	NC_000913	4544671	1	0	alignment_overlap=0	coverage_minus=6	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.605e-02	junction_possible_overlap_registers=294	key=NC_000913__2066159__1__NC_000913__4544671__1__0____300__300__0__0	max_left=13	max_left_minus=13	max_left_plus=4	max_min_left=13	max_min_left_minus=13	max_min_left_plus=4	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=295	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.05	new_junction_read_count=7	polymorphism_frequency=4.605e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=145	side_2_redundant=0	total_non_overlap_reads=7
JC	536	.	NC_000913	2067353	-1	NC_000913	2192549	1	0	alignment_overlap=3	coverage_minus=7	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=9.951e-02	junction_possible_overlap_registers=291	key=NC_000913__2067356__-1__NC_000913__2192549__1__3____300__300__0__0	max_left=50	max_left_minus=50	max_left_plus=31	max_min_left=50	max_min_left_minus=50	max_min_left_plus=31	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=584	max_right=295	max_right_minus=295	max_right_plus=281	neg_log10_pos_hash_p_value=8.3	new_junction_coverage=0.10	new_junction_read_count=14	polymorphism_frequency=9.951e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=3	side_2_possible_overlap_registers=294	side_2_read_count=128	side_2_redundant=0	total_non_overlap_reads=14
JC	537	.	NC_000913	2067353	-1	NC_000913	2218088	-1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=4.819e-02	junction_possible_overlap_registers=293	key=NC_000913__2067353__-1__NC_000913__2218089__-1__1____300__300__0__0	max_left=36	max_left_minus=36	max_left_plus=29	max_min_left=36	max_min_left_minus=36	max_min_left_plus=29	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=588	max_right=285	max_right_minus=261	max_right_plus=285	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=4.819e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.55	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=79	side_2_redundant=0	total_non_overlap_reads=4
JC	538	.	NC_000913	2067353	-1	NC_000913	2229407	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=8.333e-02	junction_possible_overlap_registers=294	key=NC_000913__2067353__-1__NC_000913__2229407__-1__0____300__300__0__0	max_left=26	max_left_minus=4	max_left_plus=26	max_min_left=26	max_min_left_minus=4	max_min_left_plus=26	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=590	max_right=295	max_right_minus=295	max_right_plus=278	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=8.333e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.31	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=44	side_2_redundant=0	total_non_overlap_reads=4
JC	539	.	NC_000913	2067353	-1	NC_000913	3906171	-1	0	alignment_overlap=4	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.753e-02	junction_possible_overlap_registers=290	key=NC_000913__2067357__-1__NC_000913__3906171__-1__4____300__300__0__0	max_left=45	max_left_minus=27	max_left_plus=45	max_min_left=45	max_min_left_minus=27	max_min_left_plus=45	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=582	max_right=282	max_right_minus=272	max_right_plus=282	neg_log10_pos_hash_p_value=10.8	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=3.753e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=4	side_2_possible_overlap_registers=294	side_2_read_count=130	side_2_redundant=0	total_non_overlap_reads=5
JC	540	.	NC_000913	2067353	-1	NC_000913	4544674	-1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=5.625e-02	junction_possible_overlap_registers=294	key=NC_000913__2067353__-1__NC_000913__4544674__-1__0____300__300__0__0	max_left=48	max_left_minus=37	max_left_plus=48	max_min_left=48	max_min_left_minus=37	max_min_left_plus=48	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=590	max_right=287	max_right_minus=287	max_right_plus=262	neg_log10_pos_hash_p_value=9.2	new_junction_coverage=0.06	new_junction_read_count=9	polymorphism_frequency=5.625e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=151	side_2_redundant=0	total_non_overlap_reads=8
JC	541	.	NC_000913	2068941	1	NC_000913	2290108	1	0	alignment_overlap=2	coverage_minus=7	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.618e-02	junction_possible_overlap_registers=292	key=NC_000913__2068941__1__NC_000913__2290106__1__2____300__300__1__0	max_left=287	max_left_minus=219	max_left_plus=287	max_min_left=103	max_min_left_minus=103	max_min_left_plus=14	max_min_right=145	max_min_right_minus=145	max_min_right_plus=18	max_pos_hash_score=586	max_right=284	max_right_minus=210	max_right_plus=284	neg_log10_pos_hash_p_value=8.3	new_junction_coverage=0.07	new_junction_read_count=10	polymorphism_frequency=5.618e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.18	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=168	side_2_redundant=0	total_non_overlap_reads=10
JC	542	.	NC_000913	2092986	1	NC_000913	2092981	-1	0	alignment_overlap=14	coverage_minus=38	coverage_plus=52	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=280	key=NC_000913__2092986__1__NC_000913__2092995__-1__14____300__300__0__0	max_left=283	max_left_minus=269	max_left_plus=283	max_min_left=138	max_min_left_minus=128	max_min_left_plus=138	max_min_right=131	max_min_right_minus=119	max_min_right_plus=131	max_pos_hash_score=562	max_right=278	max_right_minus=268	max_right_plus=278	neg_log10_pos_hash_p_value=0.8	new_junction_coverage=0.68	new_junction_read_count=92	polymorphism_frequency=9.797e-01	pos_hash_score=57	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=14	side_1_possible_overlap_registers=294	side_1_read_count=4	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=280	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=90
JC	543	.	NC_000913	2102943	-1	NC_000913	2192549	1	0	alignment_overlap=0	coverage_minus=24	coverage_plus=15	flanking_left=300	flanking_right=300	frequency=2.381e-01	junction_possible_overlap_registers=294	key=NC_000913__2102943__-1__NC_000913__2192549__1__0____300__300__1__0	max_left=289	max_left_minus=287	max_left_plus=289	max_min_left=144	max_min_left_minus=107	max_min_left_plus=144	max_min_right=145	max_min_right_minus=145	max_min_right_plus=145	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=284	neg_log10_pos_hash_p_value=3.6	new_junction_coverage=0.28	new_junction_read_count=40	polymorphism_frequency=2.381e-01	pos_hash_score=28	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=128	side_2_redundant=0	total_non_overlap_reads=39
JC	544	.	NC_000913	2120066	-1	NC_000913	2120309	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.839e-02	junction_possible_overlap_registers=284	key=NC_000913__2120066__-1__NC_000913__2120299__1__10____300__300__0__0	max_left=100	max_left_minus=100	max_left_plus=100	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=67	max_min_right_minus=67	max_min_right_plus=67	max_pos_hash_score=570	max_right=287	max_right_minus=67	max_right_plus=287	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.839e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=10	side_1_possible_overlap_registers=294	side_1_read_count=108	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.73	side_2_overlap=0	side_2_possible_overlap_registers=284	side_2_read_count=101	side_2_redundant=0	total_non_overlap_reads=3
JC	545	.	NC_000913	2200878	-1	NC_000913	2201106	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.873e-02	junction_possible_overlap_registers=282	key=NC_000913__2200878__-1__NC_000913__2201094__1__12____300__300__0__0	max_left=137	max_left_minus=137	max_left_plus=128	max_min_left=137	max_min_left_minus=137	max_min_left_plus=128	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=566	max_right=237	max_right_minus=171	max_right_plus=237	neg_log10_pos_hash_p_value=10.6	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=2.873e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.94	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=135	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.03	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=141	side_2_redundant=0	total_non_overlap_reads=4
JC	546	.	NC_000913	2218088	-1	NC_000913	2290113	-1	0	alignment_overlap=1	coverage_minus=15	coverage_plus=9	flanking_left=300	flanking_right=300	frequency=2.404e-01	junction_possible_overlap_registers=293	key=NC_000913__2218089__-1__NC_000913__2290113__-1__1____300__300__0__1	max_left=285	max_left_minus=285	max_left_plus=261	max_min_left=138	max_min_left_minus=110	max_min_left_plus=138	max_min_right=145	max_min_right_minus=145	max_min_right_plus=129	max_pos_hash_score=588	max_right=294	max_right_minus=294	max_right_plus=287	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.18	new_junction_read_count=25	polymorphism_frequency=2.404e-01	pos_hash_score=22	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.55	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=79	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=24
JC	547	.	NC_000913	2229407	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=10	coverage_plus=13	flanking_left=300	flanking_right=300	frequency=3.433e-01	junction_possible_overlap_registers=294	key=NC_000913__2229407__-1__NC_000913__2290113__-1__0____300__300__0__1	max_left=295	max_left_minus=278	max_left_plus=295	max_min_left=149	max_min_left_minus=149	max_min_left_plus=123	max_min_right=138	max_min_right_minus=138	max_min_right_plus=109	max_pos_hash_score=590	max_right=244	max_right_minus=231	max_right_plus=244	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.16	new_junction_read_count=23	polymorphism_frequency=3.433e-01	pos_hash_score=22	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.31	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=44	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=23
JC	548	.	NC_000913	2229626	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.159e-01	junction_possible_overlap_registers=294	key=NC_000913__2229626__-1__NC_000913__2290113__-1__0____300__300__0__1	max_left=193	max_left_minus=163	max_left_plus=193	max_min_left=148	max_min_left_minus=148	max_min_left_plus=0	max_min_right=107	max_min_right_minus=68	max_min_right_plus=107	max_pos_hash_score=590	max_right=151	max_right_minus=151	max_right_plus=107	neg_log10_pos_hash_p_value=10.9	new_junction_coverage=0.06	new_junction_read_count=8	polymorphism_frequency=1.159e-01	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.43	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=61	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=8
JC	549	.	NC_000913	2231205	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.556e-02	junction_possible_overlap_registers=294	key=NC_000913__2231205__-1__NC_000913__2290113__-1__0____300__300__0__1	max_left=149	max_left_minus=113	max_left_plus=149	max_min_left=149	max_min_left_minus=113	max_min_left_plus=149	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=590	max_right=276	max_right_minus=276	max_right_plus=151	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=5.556e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.36	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=51	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	550	.	NC_000913	2237684	1	NC_000913	2288919	1	0	alignment_overlap=0	coverage_minus=54	coverage_plus=68	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2237684__1__NC_000913__2288919__1__0____300__300__0__1	max_left=298	max_left_minus=292	max_left_plus=298	max_min_left=137	max_min_left_minus=137	max_min_left_plus=135	max_min_right=146	max_min_right_minus=125	max_min_right_plus=146	max_pos_hash_score=590	max_right=293	max_right_minus=293	max_right_plus=285	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.87	new_junction_read_count=124	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=122
JC	551	.	NC_000913	2237687	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=23	coverage_plus=30	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2237687__-1__NC_000913__2290113__-1__0____300__300__0__1	max_left=287	max_left_minus=280	max_left_plus=287	max_min_left=149	max_min_left_minus=130	max_min_left_plus=149	max_min_right=146	max_min_right_minus=129	max_min_right_plus=146	max_pos_hash_score=590	max_right=278	max_right_minus=215	max_right_plus=278	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.37	new_junction_read_count=53	polymorphism_frequency=1.000e+00	pos_hash_score=41	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=290	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=53
JC	552	.	NC_000913	2288919	1	NC_000913	2699679	1	0	alignment_overlap=0	coverage_minus=21	coverage_plus=20	flanking_left=300	flanking_right=300	frequency=2.575e-01	junction_possible_overlap_registers=294	key=NC_000913__2288919__1__NC_000913__2699679__1__0____300__300__1__0	max_left=281	max_left_minus=278	max_left_plus=281	max_min_left=140	max_min_left_minus=120	max_min_left_plus=140	max_min_right=141	max_min_right_minus=135	max_min_right_plus=141	max_pos_hash_score=590	max_right=297	max_right_minus=263	max_right_plus=297	neg_log10_pos_hash_p_value=2.6	new_junction_coverage=0.30	new_junction_read_count=43	polymorphism_frequency=2.575e-01	pos_hash_score=36	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=124	side_2_redundant=0	total_non_overlap_reads=41
JC	553	.	NC_000913	2288919	1	NC_000913	3206580	1	0	alignment_overlap=0	coverage_minus=16	coverage_plus=16	flanking_left=300	flanking_right=300	frequency=1.093e-01	junction_possible_overlap_registers=294	key=NC_000913__2288919__1__NC_000913__3206580__1__0____300__300__1__0	max_left=293	max_left_minus=254	max_left_plus=293	max_min_left=144	max_min_left_minus=107	max_min_left_plus=144	max_min_right=138	max_min_right_minus=138	max_min_right_plus=84	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=293	neg_log10_pos_hash_p_value=4.5	new_junction_coverage=0.23	new_junction_read_count=33	polymorphism_frequency=1.093e-01	pos_hash_score=23	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.88	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=269	side_2_redundant=0	total_non_overlap_reads=32
JC	554	.	NC_000913	2288919	1	NC_000913	3263159	1	0	alignment_overlap=1	coverage_minus=101	coverage_plus=112	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2288919__1__NC_000913__3263158__1__1____300__300__1__0	max_left=292	max_left_minus=283	max_left_plus=292	max_min_left=148	max_min_left_minus=138	max_min_left_plus=148	max_min_right=149	max_min_right_minus=149	max_min_right_plus=138	max_pos_hash_score=588	max_right=298	max_right_minus=298	max_right_plus=281	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.51	new_junction_read_count=215	polymorphism_frequency=1.000e+00	pos_hash_score=104	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=213
JC	555	.	NC_000913	2288919	1	NC_000913	3349205	-1	0	alignment_overlap=1	coverage_minus=73	coverage_plus=72	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__2288919__1__NC_000913__3349206__-1__1____300__300__1__0	max_left=293	max_left_minus=293	max_left_plus=293	max_min_left=138	max_min_left_minus=138	max_min_left_plus=134	max_min_right=147	max_min_right_minus=147	max_min_right_plus=129	max_pos_hash_score=588	max_right=298	max_right_minus=298	max_right_plus=297	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.05	new_junction_read_count=149	polymorphism_frequency=1.000e+00	pos_hash_score=86	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=145
JC	556	.	NC_000913	2288919	1	NC_000913	3727324	1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=2.717e-02	junction_possible_overlap_registers=294	key=NC_000913__2288919__1__NC_000913__3727324__1__0____300__300__1__0	max_left=293	max_left_minus=213	max_left_plus=293	max_min_left=132	max_min_left_minus=0	max_min_left_plus=132	max_min_right=147	max_min_right_minus=87	max_min_right_plus=147	max_pos_hash_score=590	max_right=223	max_right_minus=87	max_right_plus=223	neg_log10_pos_hash_p_value=10.3	new_junction_coverage=0.03	new_junction_read_count=5	polymorphism_frequency=2.717e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.25	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=179	side_2_redundant=0	total_non_overlap_reads=5
JC	557	.	NC_000913	2288919	1	NC_000913	3906168	1	0	alignment_overlap=2	coverage_minus=21	coverage_plus=17	flanking_left=300	flanking_right=300	frequency=2.321e-01	junction_possible_overlap_registers=292	key=NC_000913__2288919__1__NC_000913__3906166__1__2____300__300__1__0	max_left=284	max_left_minus=284	max_left_plus=206	max_min_left=129	max_min_left_minus=129	max_min_left_plus=102	max_min_right=134	max_min_right_minus=134	max_min_right_plus=126	max_pos_hash_score=586	max_right=289	max_right_minus=286	max_right_plus=289	neg_log10_pos_hash_p_value=3.0	new_junction_coverage=0.27	new_junction_read_count=39	polymorphism_frequency=2.321e-01	pos_hash_score=32	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=129	side_2_redundant=0	total_non_overlap_reads=38
JC	558	.	NC_000913	2290113	-1	NC_000913	2699682	-1	0	alignment_overlap=0	coverage_minus=30	coverage_plus=28	flanking_left=300	flanking_right=300	frequency=3.224e-01	junction_possible_overlap_registers=294	key=NC_000913__2290113__-1__NC_000913__2699682__-1__0____300__300__1__0	max_left=287	max_left_minus=287	max_left_plus=287	max_min_left=146	max_min_left_minus=146	max_min_left_plus=131	max_min_right=139	max_min_right_minus=139	max_min_right_plus=137	max_pos_hash_score=590	max_right=296	max_right_minus=296	max_right_plus=284	neg_log10_pos_hash_p_value=2.1	new_junction_coverage=0.41	new_junction_read_count=59	polymorphism_frequency=3.224e-01	pos_hash_score=41	prediction=polymorphism	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.87	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=124	side_2_redundant=0	total_non_overlap_reads=58
JC	559	.	NC_000913	2290113	-1	NC_000913	2787328	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.031e-02	junction_possible_overlap_registers=294	key=NC_000913__2290113__-1__NC_000913__2787328__-1__0____300__300__1__0	max_left=282	max_left_minus=282	max_left_plus=95	max_min_left=95	max_min_left_minus=73	max_min_left_plus=95	max_min_right=18	max_min_right_minus=18	max_min_right_plus=0	max_pos_hash_score=590	max_right=240	max_right_minus=240	max_right_plus=205	neg_log10_pos_hash_p_value=10.9	new_junction_coverage=0.06	new_junction_read_count=8	polymorphism_frequency=5.031e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=151	side_2_redundant=0	total_non_overlap_reads=7
JC	560	.	NC_000913	2290113	-1	NC_000913	3100045	-1	0	alignment_overlap=1	coverage_minus=2	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=5.263e-02	junction_possible_overlap_registers=293	key=NC_000913__2290113__-1__NC_000913__3100046__-1__1____300__300__1__0	max_left=221	max_left_minus=221	max_left_plus=138	max_min_left=138	max_min_left_minus=0	max_min_left_plus=138	max_min_right=134	max_min_right_minus=134	max_min_right_plus=0	max_pos_hash_score=588	max_right=240	max_right_minus=134	max_right_plus=240	neg_log10_pos_hash_p_value=10.2	new_junction_coverage=0.04	new_junction_read_count=6	polymorphism_frequency=5.263e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=108	side_2_redundant=0	total_non_overlap_reads=6
JC	561	.	NC_000913	2290113	-1	NC_000913	3206583	-1	0	alignment_overlap=0	coverage_minus=33	coverage_plus=21	flanking_left=300	flanking_right=300	frequency=1.713e-01	junction_possible_overlap_registers=294	key=NC_000913__2290113__-1__NC_000913__3206583__-1__0____300__300__1__0	max_left=287	max_left_minus=287	max_left_plus=273	max_min_left=135	max_min_left_minus=135	max_min_left_plus=130	max_min_right=144	max_min_right_minus=143	max_min_right_plus=144	max_pos_hash_score=590	max_right=296	max_right_minus=296	max_right_plus=295	neg_log10_pos_hash_p_value=1.8	new_junction_coverage=0.38	new_junction_read_count=55	polymorphism_frequency=1.713e-01	pos_hash_score=44	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.86	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=266	side_2_redundant=0	total_non_overlap_reads=54
JC	562	.	NC_000913	2290113	-1	NC_000913	3262628	-1	0	alignment_overlap=0	coverage_minus=29	coverage_plus=22	flanking_left=300	flanking_right=300	frequency=1.371e-01	junction_possible_overlap_registers=294	key=NC_000913__2290113__-1__NC_000913__3262628__-1__0____300__300__1__0	max_left=293	max_left_minus=289	max_left_plus=293	max_min_left=116	max_min_left_minus=116	max_min_left_plus=107	max_min_right=149	max_min_right_minus=149	max_min_right_plus=114	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=279	neg_log10_pos_hash_p_value=2.8	new_junction_coverage=0.36	new_junction_read_count=51	polymorphism_frequency=1.371e-01	pos_hash_score=34	prediction=polymorphism	reject=FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.24	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=321	side_2_redundant=0	total_non_overlap_reads=51
JC	563	.	NC_000913	2290113	-1	NC_000913	3263162	-1	0	alignment_overlap=0	coverage_minus=95	coverage_plus=88	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__2290113__-1__NC_000913__3263162__-1__0____300__300__1__0	max_left=288	max_left_minus=288	max_left_plus=287	max_min_left=146	max_min_left_minus=146	max_min_left_plus=144	max_min_right=149	max_min_right_minus=147	max_min_right_plus=149	max_pos_hash_score=590	max_right=297	max_right_minus=297	max_right_plus=296	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.29	new_junction_read_count=185	polymorphism_frequency=1.000e+00	pos_hash_score=104	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=183
JC	564	.	NC_000913	2290113	-1	NC_000913	3455532	-1	0	alignment_overlap=0	coverage_minus=4	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.593e-02	junction_possible_overlap_registers=294	key=NC_000913__2290113__-1__NC_000913__3455532__-1__0____300__300__1__0	max_left=244	max_left_minus=244	max_left_plus=238	max_min_left=13	max_min_left_minus=13	max_min_left_plus=0	max_min_right=134	max_min_right_minus=134	max_min_right_plus=62	max_pos_hash_score=590	max_right=287	max_right_minus=287	max_right_plus=62	neg_log10_pos_hash_p_value=10.3	new_junction_coverage=0.04	new_junction_read_count=6	polymorphism_frequency=3.593e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=161	side_2_redundant=0	total_non_overlap_reads=6
JC	565	.	NC_000913	2290113	-1	NC_000913	4544674	-1	0	alignment_overlap=0	coverage_minus=23	coverage_plus=16	flanking_left=300	flanking_right=300	frequency=2.094e-01	junction_possible_overlap_registers=294	key=NC_000913__2290113__-1__NC_000913__4544674__-1__0____300__300__1__0	max_left=295	max_left_minus=289	max_left_plus=295	max_min_left=146	max_min_left_minus=146	max_min_left_plus=142	max_min_right=143	max_min_right_minus=143	max_min_right_plus=139	max_pos_hash_score=590	max_right=287	max_right_minus=287	max_right_plus=262	neg_log10_pos_hash_p_value=3.2	new_junction_coverage=0.28	new_junction_read_count=40	polymorphism_frequency=2.094e-01	pos_hash_score=31	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=151	side_2_redundant=0	total_non_overlap_reads=39
JC	566	.	NC_000913	2290114	-1	NC_000913	3906170	-1	0	alignment_overlap=2	coverage_minus=5	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=4.314e-02	junction_possible_overlap_registers=292	key=NC_000913__2290116__-1__NC_000913__3906170__-1__2____300__300__0__0	max_left=273	max_left_minus=273	max_left_plus=0	max_min_left=115	max_min_left_minus=115	max_min_left_plus=0	max_min_right=136	max_min_right_minus=136	max_min_right_plus=0	max_pos_hash_score=586	max_right=215	max_right_minus=215	max_right_plus=0	neg_log10_pos_hash_p_value=10.2	new_junction_coverage=0.04	new_junction_read_count=6	polymorphism_frequency=4.314e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=2	side_2_possible_overlap_registers=294	side_2_read_count=134	side_2_redundant=0	total_non_overlap_reads=5
JC	567	.	NC_000913	2357690	-1	NC_000913	2357874	1	0	alignment_overlap=25	coverage_minus=5	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=5.987e-02	junction_possible_overlap_registers=269	key=NC_000913__2357690__-1__NC_000913__2357849__1__25____300__300__0__0	max_left=248	max_left_minus=248	max_left_plus=197	max_min_left=118	max_min_left_minus=117	max_min_left_plus=118	max_min_right=136	max_min_right_minus=136	max_min_right_plus=76	max_pos_hash_score=540	max_right=176	max_right_minus=170	max_right_plus=176	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.06	new_junction_read_count=8	polymorphism_frequency=5.987e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=25	side_1_possible_overlap_registers=294	side_1_read_count=138	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.96	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=125	side_2_redundant=0	total_non_overlap_reads=8
JC	568	.	NC_000913	2435258	-1	NC_000913	2435476	1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.530e-02	junction_possible_overlap_registers=287	key=NC_000913__2435258__-1__NC_000913__2435469__1__7____300__300__0__0	max_left=167	max_left_minus=167	max_left_plus=117	max_min_left=117	max_min_left_minus=0	max_min_left_plus=117	max_min_right=126	max_min_right_minus=126	max_min_right_plus=0	max_pos_hash_score=576	max_right=270	max_right_minus=126	max_right_plus=270	neg_log10_pos_hash_p_value=11.4	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.530e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=7	side_1_possible_overlap_registers=294	side_1_read_count=119	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.82	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=115	side_2_redundant=0	total_non_overlap_reads=3
JC	569	.	NC_000913	2518116	-1	NC_000913	2518232	1	0	alignment_overlap=81	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=4.331e-02	junction_possible_overlap_registers=213	key=NC_000913__2518116__-1__NC_000913__2518151__1__81____300__300__0__0	max_left=143	max_left_minus=75	max_left_plus=143	max_min_left=75	max_min_left_minus=75	max_min_left_plus=0	max_min_right=72	max_min_right_minus=0	max_min_right_plus=72	max_pos_hash_score=428	max_right=160	max_right_minus=160	max_right_plus=72	neg_log10_pos_hash_p_value=9.5	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.331e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=81	side_1_possible_overlap_registers=294	side_1_read_count=128	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.81	side_2_overlap=0	side_2_possible_overlap_registers=213	side_2_read_count=84	side_2_redundant=0	total_non_overlap_reads=4
JC	570	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=39	coverage_plus=55	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=286	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0	max_left=290	max_left_minus=281	max_left_plus=290	max_min_left=145	max_min_left_minus=145	max_min_left_plus=145	max_min_right=142	max_min_right_minus=93	max_min_right_plus=142	max_pos_hash_score=574	max_right=286	max_right_minus=282	max_right_plus=286	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.68	new_junction_read_count=95	polymorphism_frequency=1.000e+00	pos_hash_score=63	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=94
JC	571	.	NC_000913	2653419	-1	NC_000913	2653746	1	0	alignment_overlap=25	coverage_minus=7	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=8.251e-02	junction_possible_overlap_registers=269	key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0	max_left=217	max_left_minus=217	max_left_plus=217	max_min_left=19	max_min_left_minus=0	max_min_left_plus=19	max_min_right=136	max_min_right_minus=83	max_min_right_plus=136	max_pos_hash_score=540	max_right=136	max_right_minus=83	max_right_plus=136	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.10	new_junction_read_count=13	polymorphism_frequency=8.251e-02	pos_hash_score=11	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.98	side_1_overlap=25	side_1_possible_overlap_registers=294	side_1_read_count=140	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.23	side_2_overlap=0	side_2_possible_overlap_registers=269	side_2_read_count=161	side_2_redundant=0	total_non_overlap_reads=12
JC	572	.	NC_000913	2699738	1	NC_000913	3187426	-1	0	alignment_overlap=2	coverage_minus=5	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.303e-02	junction_possible_overlap_registers=292	key=NC_000913__2699736__1__NC_000913__3187426__-1__2____300__300__0__1	max_left=280	max_left_minus=280	max_left_plus=232	max_min_left=44	max_min_left_minus=0	max_min_left_plus=44	max_min_right=143	max_min_right_minus=143	max_min_right_plus=66	max_pos_hash_score=586	max_right=254	max_right_minus=143	max_right_plus=254	neg_log10_pos_hash_p_value=9.7	new_junction_coverage=0.05	new_junction_read_count=7	polymorphism_frequency=5.303e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.88	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=125	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=7
JC	573	.	NC_000913	2765412	1	NC_000913	2765419	-1	0	alignment_overlap=44	coverage_minus=45	coverage_plus=64	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=250	key=NC_000913__2765412__1__NC_000913__2765463__-1__44____300__300__0__0	max_left=251	max_left_minus=183	max_left_plus=251	max_min_left=125	max_min_left_minus=125	max_min_left_plus=121	max_min_right=124	max_min_right_minus=122	max_min_right_plus=124	max_pos_hash_score=502	max_right=251	max_right_minus=251	max_right_plus=230	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.92	new_junction_read_count=112	polymorphism_frequency=8.493e-01	pos_hash_score=62	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.24	side_1_overlap=44	side_1_possible_overlap_registers=294	side_1_read_count=35	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.08	side_2_overlap=0	side_2_possible_overlap_registers=250	side_2_read_count=10	side_2_redundant=0	total_non_overlap_reads=109
JC	574	.	NC_000913	2787325	1	NC_000913	3131340	-1	0	alignment_overlap=0	coverage_minus=5	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=3.185e-02	junction_possible_overlap_registers=294	key=NC_000913__2787325__1__NC_000913__3131340__-1__0____300__300__0__1	max_left=180	max_left_minus=180	max_left_plus=0	max_min_left=99	max_min_left_minus=99	max_min_left_plus=0	max_min_right=120	max_min_right_minus=120	max_min_right_plus=0	max_pos_hash_score=590	max_right=212	max_right_minus=212	max_right_plus=0	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.03	new_junction_read_count=5	polymorphism_frequency=3.185e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.06	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=152	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	575	.	NC_000913	2806048	-1	NC_000913	2806586	1	0	alignment_overlap=12	coverage_minus=3	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=6.382e-02	junction_possible_overlap_registers=282	key=NC_000913__2806048__-1__NC_000913__2806574__1__12____300__300__0__0	max_left=115	max_left_minus=115	max_left_plus=115	max_min_left=97	max_min_left_minus=97	max_min_left_plus=97	max_min_right=38	max_min_right_minus=38	max_min_right_plus=38	max_pos_hash_score=566	max_right=122	max_right_minus=122	max_right_plus=122	neg_log10_pos_hash_p_value=9.5	new_junction_coverage=0.04	new_junction_read_count=6	polymorphism_frequency=6.382e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=97	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.61	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=83	side_2_redundant=0	total_non_overlap_reads=6
JC	576	.	NC_000913	2818357	-1	NC_000913	2818492	1	0	alignment_overlap=20	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.624e-02	junction_possible_overlap_registers=274	key=NC_000913__2818357__-1__NC_000913__2818472__1__20____300__300__0__0	max_left=143	max_left_minus=103	max_left_plus=143	max_min_left=103	max_min_left_minus=103	max_min_left_plus=34	max_min_right=115	max_min_right_minus=0	max_min_right_plus=115	max_pos_hash_score=550	max_right=242	max_right_minus=179	max_right_plus=242	neg_log10_pos_hash_p_value=11.1	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=4.624e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.69	side_1_overlap=20	side_1_possible_overlap_registers=294	side_1_read_count=99	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.86	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=114	side_2_redundant=0	total_non_overlap_reads=3
JC	577	.	NC_000913	2869114	-1	NC_000913	2869190	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=3.834e-02	junction_possible_overlap_registers=282	key=NC_000913__2869114__-1__NC_000913__2869178__1__12____300__300__0__0	max_left=272	max_left_minus=212	max_left_plus=272	max_min_left=96	max_min_left_minus=0	max_min_left_plus=96	max_min_right=104	max_min_right_minus=104	max_min_right_plus=16	max_pos_hash_score=566	max_right=283	max_right_minus=104	max_right_plus=283	neg_log10_pos_hash_p_value=10.0	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=3.834e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.89	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=127	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=129	side_2_redundant=0	total_non_overlap_reads=5
JC	578	.	NC_000913	2877791	-1	NC_000913	2878097	1	0	alignment_overlap=18	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.108e-02	junction_possible_overlap_registers=276	key=NC_000913__2877791__-1__NC_000913__2878079__1__18____300__300__0__0	max_left=277	max_left_minus=277	max_left_plus=194	max_min_left=33	max_min_left_minus=0	max_min_left_plus=33	max_min_right=99	max_min_right_minus=99	max_min_right_plus=86	max_pos_hash_score=554	max_right=248	max_right_minus=99	max_right_plus=248	neg_log10_pos_hash_p_value=10.5	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=4.108e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.71	side_1_overlap=18	side_1_possible_overlap_registers=294	side_1_read_count=102	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.68	side_2_overlap=0	side_2_possible_overlap_registers=276	side_2_read_count=91	side_2_redundant=0	total_non_overlap_reads=4
JC	579	.	NC_000913	2877912	-1	NC_000913	2878464	1	0	alignment_overlap=29	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.538e-02	junction_possible_overlap_registers=265	key=NC_000913__2877912__-1__NC_000913__2878435__1__29____300__300__0__0	max_left=23	max_left_minus=23	max_left_plus=23	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=16	max_min_right_minus=16	max_min_right_plus=16	max_pos_hash_score=532	max_right=121	max_right_minus=16	max_right_plus=121	neg_log10_pos_hash_p_value=10.9	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=3.538e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.63	side_1_overlap=29	side_1_possible_overlap_registers=294	side_1_read_count=90	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=265	side_2_read_count=137	side_2_redundant=0	total_non_overlap_reads=3
JC	580	.	NC_000913	2904039	-1	NC_000913	2904101	1	0	alignment_overlap=26	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.342e-02	junction_possible_overlap_registers=268	key=NC_000913__2904039__-1__NC_000913__2904075__1__26____300__300__0__0	max_left=168	max_left_minus=103	max_left_plus=168	max_min_left=103	max_min_left_minus=103	max_min_left_plus=103	max_min_right=106	max_min_right_minus=0	max_min_right_plus=106	max_pos_hash_score=538	max_right=152	max_right_minus=152	max_right_plus=152	neg_log10_pos_hash_p_value=10.9	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.342e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=26	side_1_possible_overlap_registers=294	side_1_read_count=145	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=268	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=3
JC	581	.	NC_000913	2904164	-1	NC_000913	2904287	1	0	alignment_overlap=31	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.399e-02	junction_possible_overlap_registers=263	key=NC_000913__2904164__-1__NC_000913__2904256__1__31____300__300__0__0	max_left=127	max_left_minus=127	max_left_plus=48	max_min_left=127	max_min_left_minus=127	max_min_left_plus=48	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=528	max_right=230	max_right_minus=230	max_right_plus=218	neg_log10_pos_hash_p_value=10.2	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=3.399e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=31	side_1_possible_overlap_registers=294	side_1_read_count=129	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.88	side_2_overlap=0	side_2_possible_overlap_registers=263	side_2_read_count=112	side_2_redundant=0	total_non_overlap_reads=4
JC	582	.	NC_000913	2947467	-1	NC_000913	2947688	1	0	alignment_overlap=83	coverage_minus=6	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.404e-01	junction_possible_overlap_registers=211	key=NC_000913__2947467__-1__NC_000913__2947605__1__83____300__300__0__0	max_left=215	max_left_minus=215	max_left_plus=157	max_min_left=88	max_min_left_minus=21	max_min_left_plus=88	max_min_right=60	max_min_right_minus=48	max_min_right_plus=60	max_pos_hash_score=424	max_right=199	max_right_minus=199	max_right_plus=133	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.11	new_junction_read_count=11	polymorphism_frequency=1.404e-01	pos_hash_score=10	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=83	side_1_possible_overlap_registers=294	side_1_read_count=86	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.71	side_2_overlap=0	side_2_possible_overlap_registers=211	side_2_read_count=73	side_2_redundant=0	total_non_overlap_reads=11
JC	583	.	NC_000913	3130147	1	NC_000913	3186096	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=NA	junction_possible_overlap_registers=294	key=NC_000913__3130147__1__NC_000913__3186096__1__0____300__300__1__1	max_left=294	max_left_minus=287	max_left_plus=294	max_min_left=106	max_min_left_minus=0	max_min_left_plus=106	max_min_right=96	max_min_right_minus=96	max_min_right_plus=6	max_pos_hash_score=590	max_right=218	max_right_minus=96	max_right_plus=218	neg_log10_pos_hash_p_value=10.3	new_junction_coverage=0.04	new_junction_read_count=6	polymorphism_frequency=NA	pos_hash_score=5	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=6
JC	584	.	NC_000913	3131340	-1	NC_000913	3138533	1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=27	flanking_left=300	flanking_right=300	frequency=1.982e-01	junction_possible_overlap_registers=294	key=NC_000913__3131340__-1__NC_000913__3138533__1__0____300__300__1__0	max_left=281	max_left_minus=257	max_left_plus=281	max_min_left=140	max_min_left_minus=132	max_min_left_plus=140	max_min_right=147	max_min_right_minus=137	max_min_right_plus=147	max_pos_hash_score=590	max_right=296	max_right_minus=296	max_right_plus=293	neg_log10_pos_hash_p_value=3.4	new_junction_coverage=0.31	new_junction_read_count=44	polymorphism_frequency=1.982e-01	pos_hash_score=30	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.24	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=178	side_2_redundant=0	total_non_overlap_reads=44
JC	585	.	NC_000913	3131340	-1	NC_000913	3227781	1	0	alignment_overlap=0	coverage_minus=24	coverage_plus=16	flanking_left=300	flanking_right=300	frequency=1.296e-01	junction_possible_overlap_registers=294	key=NC_000913__3131340__-1__NC_000913__3227781__1__0____300__300__1__0	max_left=273	max_left_minus=258	max_left_plus=273	max_min_left=145	max_min_left_minus=139	max_min_left_plus=145	max_min_right=134	max_min_right_minus=134	max_min_right_plus=130	max_pos_hash_score=590	max_right=296	max_right_minus=296	max_right_plus=264	neg_log10_pos_hash_p_value=3.4	new_junction_coverage=0.29	new_junction_read_count=42	polymorphism_frequency=1.296e-01	pos_hash_score=30	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.97	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=282	side_2_redundant=0	total_non_overlap_reads=40
JC	586	.	NC_000913	3269912	-1	NC_000913	3270240	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.849e-02	junction_possible_overlap_registers=294	key=NC_000913__3269912__-1__NC_000913__3270240__1__0____300__300__0__0	max_left=174	max_left_minus=174	max_left_plus=102	max_min_left=102	max_min_left_minus=96	max_min_left_plus=102	max_min_right=135	max_min_right_minus=135	max_min_right_plus=0	max_pos_hash_score=590	max_right=229	max_right_minus=199	max_right_plus=229	neg_log10_pos_hash_p_value=10.3	new_junction_coverage=0.04	new_junction_read_count=6	polymorphism_frequency=1.849e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=2.37	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=339	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=2.08	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=298	side_2_redundant=0	total_non_overlap_reads=6
JC	587	.	NC_000913	3270072	1	NC_000913	3639193	1	-10	alignment_overlap=-10	coverage_minus=9	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.395e-02	junction_possible_overlap_registers=284	key=NC_000913__3270072__1__NC_000913__3639193__1__-10__CAGATTGTTG__300__300__0__0	max_left=278	max_left_minus=278	max_left_plus=247	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=43	max_min_right_minus=43	max_min_right_plus=43	max_pos_hash_score=570	max_right=43	max_right_minus=43	max_right_plus=43	neg_log10_pos_hash_p_value=8.1	new_junction_coverage=0.09	new_junction_read_count=13	polymorphism_frequency=6.395e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.62	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=232	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.13	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=162	side_2_redundant=0	total_non_overlap_reads=11	unique_read_sequence=CAGATTGTTG
JC	588	.	NC_000913	3270072	1	NC_000913	4137788	1	-25	alignment_overlap=-25	coverage_minus=7	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.607e-02	junction_possible_overlap_registers=269	key=NC_000913__3270072__1__NC_000913__4137788__1__-25__CAGATTGTTGAGTGCGCTTTATTCA__300__300__0__0	max_left=271	max_left_minus=271	max_left_plus=247	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=43	max_min_right_minus=43	max_min_right_plus=28	max_pos_hash_score=540	max_right=43	max_right_minus=43	max_right_plus=28	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.08	new_junction_read_count=10	polymorphism_frequency=5.607e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.64	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=234	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=134	side_2_redundant=0	total_non_overlap_reads=9	unique_read_sequence=CAGATTGTTGAGTGCGCTTTATTCA
JC	589	.	NC_000913	3284799	1	NC_000913	3366750	-1	0	alignment_overlap=2	coverage_minus=28	coverage_plus=68	flanking_left=300	flanking_right=300	frequency=3.769e-01	junction_possible_overlap_registers=292	key=NC_000913__3284797__1__NC_000913__3366750__-1__2____300__300__0__1	max_left=296	max_left_minus=267	max_left_plus=296	max_min_left=145	max_min_left_minus=145	max_min_left_plus=139	max_min_right=149	max_min_right_minus=142	max_min_right_plus=149	max_pos_hash_score=586	max_right=293	max_right_minus=293	max_right_plus=285	neg_log10_pos_hash_p_value=1.0	new_junction_coverage=0.69	new_junction_read_count=98	polymorphism_frequency=3.769e-01	pos_hash_score=55	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.14	side_1_overlap=0	side_1_possible_overlap_registers=292	side_1_read_count=162	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=96
JC	590	.	NC_000913	3284802	-1	NC_000913	3285900	-1	0	alignment_overlap=0	coverage_minus=58	coverage_plus=58	flanking_left=300	flanking_right=300	frequency=4.499e-01	junction_possible_overlap_registers=294	key=NC_000913__3284802__-1__NC_000913__3285900__-1__0____300__300__0__0	max_left=297	max_left_minus=272	max_left_plus=297	max_min_left=146	max_min_left_minus=145	max_min_left_plus=146	max_min_right=145	max_min_right_minus=143	max_min_right_plus=145	max_pos_hash_score=590	max_right=294	max_right_minus=294	max_right_plus=280	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.83	new_junction_read_count=119	polymorphism_frequency=4.499e-01	pos_hash_score=65	prediction=polymorphism	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.13	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=162	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.90	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=129	side_2_redundant=0	total_non_overlap_reads=116
JC	591	.	NC_000913	3469019	-1	NC_000913	3469323	1	0	alignment_overlap=2	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.432e-02	junction_possible_overlap_registers=292	key=NC_000913__3469019__-1__NC_000913__3469321__1__2____300__300__0__0	max_left=132	max_left_minus=132	max_left_plus=120	max_min_left=132	max_min_left_minus=132	max_min_left_plus=120	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=586	max_right=178	max_right_minus=162	max_right_plus=178	neg_log10_pos_hash_p_value=10.8	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=2.432e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.11	side_1_overlap=2	side_1_possible_overlap_registers=294	side_1_read_count=159	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.15	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=163	side_2_redundant=0	total_non_overlap_reads=4
JC	592	.	NC_000913	3469049	-1	NC_000913	3469353	1	0	alignment_overlap=8	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=4.912e-02	junction_possible_overlap_registers=286	key=NC_000913__3469049__-1__NC_000913__3469345__1__8____300__300__0__0	max_left=290	max_left_minus=290	max_left_plus=147	max_min_left=137	max_min_left_minus=55	max_min_left_plus=137	max_min_right=143	max_min_right_minus=70	max_min_right_plus=143	max_pos_hash_score=574	max_right=155	max_right_minus=130	max_right_plus=155	neg_log10_pos_hash_p_value=9.1	new_junction_coverage=0.06	new_junction_read_count=8	polymorphism_frequency=4.912e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.10	side_1_overlap=8	side_1_possible_overlap_registers=294	side_1_read_count=158	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.12	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=156	side_2_redundant=0	total_non_overlap_reads=8
JC	593	.	NC_000913	3469405	-1	NC_000913	3469715	1	0	alignment_overlap=16	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=2.358e-02	junction_possible_overlap_registers=278	key=NC_000913__3469405__-1__NC_000913__3469699__1__16____300__300__0__0	max_left=140	max_left_minus=140	max_left_plus=112	max_min_left=59	max_min_left_minus=0	max_min_left_plus=59	max_min_right=42	max_min_right_minus=4	max_min_right_plus=42	max_pos_hash_score=558	max_right=61	max_right_minus=4	max_right_plus=61	neg_log10_pos_hash_p_value=11.2	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=2.358e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.13	side_1_overlap=16	side_1_possible_overlap_registers=294	side_1_read_count=161	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.32	side_2_overlap=0	side_2_possible_overlap_registers=278	side_2_read_count=179	side_2_redundant=0	total_non_overlap_reads=3
JC	594	.	NC_000913	3583428	1	NC_000913	3731420	1	0	alignment_overlap=0	coverage_minus=90	coverage_plus=63	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3583428__1__NC_000913__3731420__1__0____300__300__1__0	max_left=298	max_left_minus=291	max_left_plus=298	max_min_left=148	max_min_left_minus=148	max_min_left_plus=148	max_min_right=149	max_min_right_minus=149	max_min_right_plus=144	max_pos_hash_score=590	max_right=292	max_right_minus=292	max_right_plus=284	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.10	new_junction_read_count=157	polymorphism_frequency=1.000e+00	pos_hash_score=88	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=153
JC	595	.	NC_000913	3584195	-1	NC_000913	3731428	-1	0	alignment_overlap=0	coverage_minus=99	coverage_plus=73	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=294	key=NC_000913__3584195__-1__NC_000913__3731428__-1__0____300__300__1__0	max_left=294	max_left_minus=291	max_left_plus=294	max_min_left=140	max_min_left_minus=140	max_min_left_plus=131	max_min_right=146	max_min_right_minus=146	max_min_right_plus=135	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=285	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.23	new_junction_read_count=176	polymorphism_frequency=1.000e+00	pos_hash_score=94	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=172
JC	596	.	NC_000913	3621836	-1	NC_000913	3622017	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.104e-01	junction_possible_overlap_registers=282	key=NC_000913__3621848__-1__NC_000913__3622017__1__12____300__300__1__0	max_left=224	max_left_minus=139	max_left_plus=224	max_min_left=139	max_min_left_minus=139	max_min_left_plus=0	max_min_right=64	max_min_right_minus=0	max_min_right_plus=64	max_pos_hash_score=566	max_right=153	max_right_minus=153	max_right_plus=64	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=5.104e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=12	side_2_possible_overlap_registers=294	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=3
JC	597	.	NC_000913	3647150	-1	NC_000913	4507459	1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.030e-02	junction_possible_overlap_registers=294	key=NC_000913__3647150__-1__NC_000913__4507459__1__0____300__300__0__1	max_left=181	max_left_minus=181	max_left_plus=88	max_min_left=88	max_min_left_minus=0	max_min_left_plus=88	max_min_right=125	max_min_right_minus=125	max_min_right_plus=0	max_pos_hash_score=590	max_right=211	max_right_minus=125	max_right_plus=211	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=3.030e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.90	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=128	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=3
JC	598	.	NC_000913	3652036	1	NC_000913	3906169	1	-1	alignment_overlap=-1	coverage_minus=4	coverage_plus=0	flanking_left=300	flanking_right=300	frequency=2.908e-02	junction_possible_overlap_registers=293	key=NC_000913__3652036__1__NC_000913__3906169__1__-1__A__300__300__1__0	max_left=291	max_left_minus=291	max_left_plus=0	max_min_left=111	max_min_left_minus=111	max_min_left_plus=0	max_min_right=128	max_min_right_minus=128	max_min_right_plus=0	max_pos_hash_score=588	max_right=188	max_right_minus=188	max_right_plus=0	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=2.908e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=134	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=A
JC	599	.	NC_000913	3652036	1	NC_000913	4544671	1	0	alignment_overlap=0	coverage_minus=17	coverage_plus=20	flanking_left=300	flanking_right=300	frequency=2.162e-01	junction_possible_overlap_registers=294	key=NC_000913__3652036__1__NC_000913__4544671__1__0____300__300__1__0	max_left=294	max_left_minus=273	max_left_plus=294	max_min_left=129	max_min_left_minus=98	max_min_left_plus=129	max_min_right=147	max_min_right_minus=147	max_min_right_plus=117	max_pos_hash_score=590	max_right=298	max_right_minus=298	max_right_plus=295	neg_log10_pos_hash_p_value=3.8	new_junction_coverage=0.28	new_junction_read_count=40	polymorphism_frequency=2.162e-01	pos_hash_score=27	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.01	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=145	side_2_redundant=0	total_non_overlap_reads=37
JC	600	.	NC_000913	3653230	-1	NC_000913	3906171	-1	0	alignment_overlap=0	coverage_minus=18	coverage_plus=7	flanking_left=300	flanking_right=300	frequency=1.613e-01	junction_possible_overlap_registers=294	key=NC_000913__3653230__-1__NC_000913__3906171__-1__0____300__300__1__0	max_left=295	max_left_minus=292	max_left_plus=295	max_min_left=146	max_min_left_minus=146	max_min_left_plus=108	max_min_right=139	max_min_right_minus=139	max_min_right_plus=6	max_pos_hash_score=590	max_right=286	max_right_minus=276	max_right_plus=286	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.17	new_junction_read_count=25	polymorphism_frequency=1.613e-01	pos_hash_score=22	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=130	side_2_redundant=0	total_non_overlap_reads=25
JC	601	.	NC_000913	3764827	-1	NC_000913	3765008	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.382e-01	junction_possible_overlap_registers=282	key=NC_000913__3764839__-1__NC_000913__3765008__1__12____300__300__1__0	max_left=224	max_left_minus=139	max_left_plus=224	max_min_left=139	max_min_left_minus=139	max_min_left_plus=0	max_min_right=64	max_min_right_minus=0	max_min_right_plus=64	max_pos_hash_score=566	max_right=153	max_right_minus=153	max_right_plus=64	neg_log10_pos_hash_p_value=11.3	new_junction_coverage=0.02	new_junction_read_count=3	polymorphism_frequency=2.382e-01	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.07	side_2_overlap=12	side_2_possible_overlap_registers=294	side_2_read_count=10	side_2_redundant=0	total_non_overlap_reads=3
JC	602	.	NC_000913	3873432	-1	NC_000913	3873962	1	0	alignment_overlap=15	coverage_minus=1	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.883e-02	junction_possible_overlap_registers=279	key=NC_000913__3873432__-1__NC_000913__3873947__1__15____300__300__0__0	max_left=42	max_left_minus=42	max_left_plus=42	max_min_left=9	max_min_left_minus=0	max_min_left_plus=9	max_min_right=42	max_min_right_minus=42	max_min_right_plus=42	max_pos_hash_score=560	max_right=114	max_right_minus=42	max_right_plus=114	neg_log10_pos_hash_p_value=11.2	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=3.883e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.55	side_1_overlap=15	side_1_possible_overlap_registers=294	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.91	side_2_overlap=0	side_2_possible_overlap_registers=279	side_2_read_count=124	side_2_redundant=0	total_non_overlap_reads=3
JC	603	.	NC_000913	4130166	-1	NC_000913	4130629	1	0	alignment_overlap=12	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=4.961e-02	junction_possible_overlap_registers=282	key=NC_000913__4130166__-1__NC_000913__4130617__1__12____300__300__0__0	max_left=117	max_left_minus=117	max_left_plus=98	max_min_left=98	max_min_left_minus=98	max_min_left_plus=98	max_min_right=59	max_min_right_minus=3	max_min_right_plus=59	max_pos_hash_score=566	max_right=165	max_right_minus=103	max_right_plus=165	neg_log10_pos_hash_p_value=10.0	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=4.961e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.76	side_1_overlap=12	side_1_possible_overlap_registers=294	side_1_read_count=108	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.64	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=88	side_2_redundant=0	total_non_overlap_reads=5
JC	604	.	NC_000913	4153817	1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.651e-02	junction_possible_overlap_registers=294	key=NC_000913__4153817__1__NC_000913__4498181__1__0____300__300__0__1	max_left=225	max_left_minus=206	max_left_plus=225	max_min_left=136	max_min_left_minus=84	max_min_left_plus=136	max_min_right=93	max_min_right_minus=93	max_min_right_plus=74	max_pos_hash_score=590	max_right=216	max_right_minus=216	max_right_plus=163	neg_log10_pos_hash_p_value=10.9	new_junction_coverage=0.04	new_junction_read_count=6	polymorphism_frequency=4.651e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.86	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=123	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=5
JC	605	.	NC_000913	4153821	-1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=3	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.200e-02	junction_possible_overlap_registers=294	key=NC_000913__4153821__-1__NC_000913__4499511__-1__0____300__300__0__1	max_left=232	max_left_minus=232	max_left_plus=39	max_min_left=39	max_min_left_minus=0	max_min_left_plus=39	max_min_right=69	max_min_right_minus=69	max_min_right_plus=0	max_pos_hash_score=590	max_right=261	max_right_minus=69	max_right_plus=261	neg_log10_pos_hash_p_value=11.5	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=3.200e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.85	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=121	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=4
JC	606	.	NC_000913	4295870	-1	NC_000913	4296434	1	0	alignment_overlap=39	coverage_minus=5	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=6.133e-02	junction_possible_overlap_registers=255	key=NC_000913__4295870__-1__NC_000913__4296395__1__39____300__300__0__0	max_left=190	max_left_minus=190	max_left_plus=179	max_min_left=127	max_min_left_minus=15	max_min_left_plus=127	max_min_right=71	max_min_right_minus=71	max_min_right_plus=58	max_pos_hash_score=512	max_right=159	max_right_minus=159	max_right_plus=142	neg_log10_pos_hash_p_value=7.9	new_junction_coverage=0.06	new_junction_read_count=8	polymorphism_frequency=6.133e-02	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=39	side_1_possible_overlap_registers=294	side_1_read_count=144	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.97	side_2_overlap=0	side_2_possible_overlap_registers=255	side_2_read_count=120	side_2_redundant=0	total_non_overlap_reads=8
JC	607	.	NC_000913	4444443	1	NC_000913	4503515	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=3.101e-02	junction_possible_overlap_registers=294	key=NC_000913__4444443__1__NC_000913__4503515__-1__0____300__300__0__0	max_left=190	max_left_minus=0	max_left_plus=190	max_min_left=113	max_min_left_minus=0	max_min_left_plus=113	max_min_right=128	max_min_right_minus=0	max_min_right_plus=128	max_pos_hash_score=590	max_right=187	max_right_minus=0	max_right_plus=187	neg_log10_pos_hash_p_value=10.9	new_junction_coverage=0.03	new_junction_read_count=4	polymorphism_frequency=3.101e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.87	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=125	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=4
JC	608	.	NC_000913	4507458	-1	NC_000913	4508679	1	0	alignment_overlap=4	coverage_minus=0	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=NA	junction_possible_overlap_registers=290	key=NC_000913__4507458__-1__NC_000913__4508675__1__4____300__300__0__0	max_left=240	max_left_minus=0	max_left_plus=240	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=146	max_min_right_minus=0	max_min_right_plus=146	max_pos_hash_score=582	max_right=146	max_right_minus=0	max_right_plus=146	neg_log10_pos_hash_p_value=11.4	new_junction_coverage=0.04	new_junction_read_count=5	polymorphism_frequency=NA	pos_hash_score=3	prediction=unknown	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=4	side_1_read_count=NA	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=5
JC	609	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=3.405e-02	junction_possible_overlap_registers=285	key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0	max_left=289	max_left_minus=207	max_left_plus=289	max_min_left=133	max_min_left_minus=0	max_min_left_plus=133	max_min_right=136	max_min_right_minus=136	max_min_right_plus=76	max_pos_hash_score=572	max_right=266	max_right_minus=136	max_right_plus=266	neg_log10_pos_hash_p_value=9.0	new_junction_coverage=0.05	new_junction_read_count=7	polymorphism_frequency=3.405e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.56	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=223	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.31	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=181	side_2_redundant=0	total_non_overlap_reads=7
JC	610	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=6	coverage_plus=11	flanking_left=300	flanking_right=300	frequency=8.059e-02	junction_possible_overlap_registers=285	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0	max_left=280	max_left_minus=237	max_left_plus=280	max_min_left=144	max_min_left_minus=144	max_min_left_plus=141	max_min_right=129	max_min_right_minus=120	max_min_right_plus=129	max_pos_hash_score=572	max_right=283	max_right_minus=207	max_right_plus=283	neg_log10_pos_hash_p_value=5.9	new_junction_coverage=0.13	new_junction_read_count=18	polymorphism_frequency=8.059e-02	pos_hash_score=16	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.66	side_1_overlap=9	side_1_possible_overlap_registers=294	side_1_read_count=238	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.30	side_2_overlap=0	side_2_possible_overlap_registers=285	side_2_read_count=180	side_2_redundant=0	total_non_overlap_reads=17
JC	611	.	NC_000913	4617820	1	NC_000913	4617830	-1	0	alignment_overlap=1	coverage_minus=59	coverage_plus=82	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__4617820__1__NC_000913__4617831__-1__1____300__300__0__0	max_left=294	max_left_minus=291	max_left_plus=294	max_min_left=149	max_min_left_minus=149	max_min_left_plus=148	max_min_right=146	max_min_right_minus=129	max_min_right_plus=146	max_pos_hash_score=588	max_right=293	max_right_minus=293	max_right_plus=287	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.00	new_junction_read_count=143	polymorphism_frequency=9.440e-01	pos_hash_score=82	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.07	side_1_overlap=1	side_1_possible_overlap_registers=294	side_1_read_count=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.05	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=7	side_2_redundant=0	total_non_overlap_reads=141
JC	612	.	NC_000913	4640641	1	NC_000913	4640644	-1	0	alignment_overlap=1	coverage_minus=74	coverage_plus=122	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=293	key=NC_000913__4640641__1__NC_000913__4640645__-1__1____300__300__0__0	max_left=294	max_left_minus=291	max_left_plus=294	max_min_left=149	max_min_left_minus=138	max_min_left_plus=149	max_min_right=148	max_min_right_minus=148	max_min_right_plus=147	max_pos_hash_score=588	max_right=294	max_right_minus=294	max_right_plus=291	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.40	new_junction_read_count=200	polymorphism_frequency=9.804e-01	pos_hash_score=105	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=1	side_1_possible_overlap_registers=294	side_1_read_count=5	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=196
UN	613	.	NC_000913	15663	16453
UN	614	.	NC_000913	16455	16455
UN	615	.	NC_000913	20084	20285
UN	616	.	NC_000913	224019	224495
UN	617	.	NC_000913	225169	225317
UN	618	.	NC_000913	227271	228411
UN	619	.	NC_000913	228414	228414
UN	620	.	NC_000913	228422	228422
UN	621	.	NC_000913	257908	258683
UN	622	.	NC_000913	270810	270810
UN	623	.	NC_000913	270812	270812
UN	624	.	NC_000913	270815	271023
UN	625	.	NC_000913	274248	274865
UN	626	.	NC_000913	279438	279438
UN	627	.	NC_000913	279446	279653
UN	628	.	NC_000913	290918	291129
UN	629	.	NC_000913	315509	315509
UN	630	.	NC_000913	315512	316211
UN	631	.	NC_000913	316218	316218
UN	632	.	NC_000913	381549	382329
UN	633	.	NC_000913	382331	382332
UN	634	.	NC_000913	382334	382335
UN	635	.	NC_000913	391984	392686
UN	636	.	NC_000913	526130	526130
UN	637	.	NC_000913	526133	526432
UN	638	.	NC_000913	526434	526434
UN	639	.	NC_000913	526436	526436
UN	640	.	NC_000913	567034	567034
UN	641	.	NC_000913	567050	567770
UN	642	.	NC_000913	574870	575505
UN	643	.	NC_000913	608291	609072
UN	644	.	NC_000913	688131	688759
UN	645	.	NC_000913	688763	688763
UN	646	.	NC_000913	1094528	1095216
UN	647	.	NC_000913	1095219	1095219
UN	648	.	NC_000913	1196374	1211413
UN	649	.	NC_000913	1299499	1300697
UN	650	.	NC_000913	1396324	1396961
UN	651	.	NC_000913	1396963	1396963
UN	652	.	NC_000913	1432945	1433089
UN	653	.	NC_000913	1468194	1468959
UN	654	.	NC_000913	1469546	1469546
UN	655	.	NC_000913	1469550	1470221
UN	656	.	NC_000913	1528561	1528564
UN	657	.	NC_000913	1528566	1528566
UN	658	.	NC_000913	1528569	1528886
UN	659	.	NC_000913	1632810	1633352
UN	660	.	NC_000913	1651113	1651265
UN	661	.	NC_000913	1651269	1651269
UN	662	.	NC_000913	1978503	1979278
UN	663	.	NC_000913	2067012	2067025
UN	664	.	NC_000913	2067029	2067031
UN	665	.	NC_000913	2069204	2069204
UN	666	.	NC_000913	2069207	2069208
UN	667	.	NC_000913	2069213	2069987
UN	668	.	NC_000913	2069989	2069989
UN	669	.	NC_000913	2092982	2092985
UN	670	.	NC_000913	2102011	2102663
UN	671	.	NC_000913	2170440	2171153
UN	672	.	NC_000913	2289204	2289205
UN	673	.	NC_000913	2289207	2289829
UN	674	.	NC_000913	2514561	2515351
UN	675	.	NC_000913	2558699	2565488
UN	676	.	NC_000913	2726336	2726337
UN	677	.	NC_000913	2726341	2728977
UN	678	.	NC_000913	2729835	2730670
UN	679	.	NC_000913	2730673	2730674
UN	680	.	NC_000913	2730678	2730678
UN	681	.	NC_000913	2730682	2730683
UN	682	.	NC_000913	2730686	2730686
UN	683	.	NC_000913	2996630	2997410
UN	684	.	NC_000913	3130426	3131061
UN	685	.	NC_000913	3186385	3187146
UN	686	.	NC_000913	3187153	3187154
UN	687	.	NC_000913	3349206	3366463
UN	688	.	NC_000913	3423933	3424366
UN	689	.	NC_000913	3424940	3424940
UN	690	.	NC_000913	3424944	3426576
UN	691	.	NC_000913	3426578	3426578
UN	692	.	NC_000913	3427221	3427221
UN	693	.	NC_000913	3427223	3428298
UN	694	.	NC_000913	3583710	3583912
UN	695	.	NC_000913	3619540	3619540
UN	696	.	NC_000913	3619542	3620807
UN	697	.	NC_000913	3621354	3622054
UN	698	.	NC_000913	3652292	3652950
UN	699	.	NC_000913	3762523	3765000
UN	700	.	NC_000913	3942319	3943122
UN	701	.	NC_000913	3944339	3944339
UN	702	.	NC_000913	3944344	3945289
UN	703	.	NC_000913	4035441	4035441
UN	704	.	NC_000913	4035443	4035443
UN	705	.	NC_000913	4035445	4036812
UN	706	.	NC_000913	4038104	4038104
UN	707	.	NC_000913	4038107	4038714
UN	708	.	NC_000913	4039006	4039006
UN	709	.	NC_000913	4039011	4039105
UN	710	.	NC_000913	4039644	4040317
UN	711	.	NC_000913	4166573	4166574
UN	712	.	NC_000913	4166585	4166589
UN	713	.	NC_000913	4166932	4167940
UN	714	.	NC_000913	4168835	4171368
UN	715	.	NC_000913	4171372	4171375
UN	716	.	NC_000913	4208395	4209460
UN	717	.	NC_000913	4210309	4212836
UN	718	.	NC_000913	4498476	4499226
UN	719	.	NC_000913	4499228	4499228
UN	720	.	NC_000913	4507747	4508412
UN	721	.	NC_000913	4508422	4508422