mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 972 | G→A | A212A (GCG→GCA) | thrA → | fused aspartate kinase/homoserine dehydrogenase 1 |
| RA | 71,170 | T→C | S262P (TCG→CCG) | araC → | DNA‑binding transcriptional dual regulator AraC |
| RA | 81,044 | C→T | L305L (CTG→CTA) | leuB ← | 3‑isopropylmalate dehydrogenase |
| RA | 81,102 | G→A | S286L (TCG→TTG) | leuB ← | 3‑isopropylmalate dehydrogenase |
| RA | 85,203 | C→T | P279L (CCG→CTG) | leuO → | DNA‑binding transcriptional dual regulator LeuO |
| RA | 154,182 | C→T | L415L (CTG→CTA) | htrE ← | putative fimbrial usher protein HtrE |
| RA | 156,068 | A→G | V45A (GTA→GCA) | yadV ← | putative fimbrial chaperone YadV |
| JC JC | 156,469 | IS1 (–) +9 bp | coding (407‑415/585 nt) | yadN ← | putative fimbrial protein YadN |
| JC JC | 168,803 | IS1 (+) +9 bp | coding (1320‑1328/2244 nt) | fhuA → | ferrichrome outer membrane transporter/phage receptor |
| RA | 223,560 | T→A | intergenic (+152/‑211) | gmhB → / → rrsH | D‑glycero‑beta‑D‑manno‑heptose‑1,7‑bisphosphate 7‑phosphatase/16S ribosomal RNA |
| RA | 246,985 | C→T | P92S (CCG→TCG) | yafL → | NlpC/P60 family protein YafL |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 284,535 | T→G | A445A (GCT→GCG) | yagF → | D‑xylonate dehydratase |
| RA | 290,892 | C→T | M87I (ATG→ATA) | insB3 ← | IS1 family protein InsB |
| RA | 292,019 | C→T | L174L (CTA→TTA) | yagJ → | protein YagJ |
| RA | 309,381 | C→T | D216N (GAT→AAT) | ecpB ← | putative fimbrial chaperone EcpB |
| RA | 309,985 | T→A | G14G (GGA→GGT) | ecpB ← | putative fimbrial chaperone EcpB |
| JC JC | 362,204 | IS1 (–) +9 bp | coding (968‑976/1254 nt) | lacY ← | lactose permease |
| RA | 402,007 | C→T | A87A (GCC→GCT) | phoA → | alkaline phosphatase |
| RA | 410,666 | C→T | P175S (CCT→TCT) | mak → | fructokinase |
| RA | 421,027 | C→T | R14R (CGC→CGT) | proY → | putative transporter ProY |
| RA | 456,711 | C→G | P12R (CCC→CGC) | clpP → | ATP‑dependent Clp protease proteolytic subunit |
| RA | 472,849 | A→G | G84G (GGA→GGG) | glnK → | nitrogen regulatory protein PII‑2 |
| RA | 495,622 | C→T | T168I (ACC→ATC) | htpG → | chaperone protein HtpG |
| RA | 534,742 | G→A | G276D (GGT→GAT) | gcl → | glyoxylate carboligase |
| RA | 547,891 | C→T | L404L (CTC→CTT) | fdrA → | putative oxamate carbamoyltransferase FdrA |
| MC JC | 575,786 | Δ3,398 bp | IS5‑mediated | [nmpC]–borD | [nmpC], essD, rrrD, rzpD, rzoD, borD |
| RA | 582,597 | C→T | intergenic (+500/‑278) | tfaD → / → tfaX | putative tail fiber assembly protein TfaD/protein TfaX |
| RA | 690,948 | G→A | V279V (GTC→GTT) | ybeX ← | CorC‑HlyC family protein YbeX |
| RA | 700,038 | G→A | H97Y (CAT→TAT) | umpH ← | UMP phosphatase |
| RA | 809,217 | 2 bp→AG | coding (40‑41/1290 nt) | bioA ← | adenosylmethionine‑8‑amino‑7‑oxononanoate aminotransferase |
| RA | 1,073,610 | G→A | N134N (AAC→AAT) | rutA ← | pyrimidine monooxygenase RutA |
| RA | 1,077,657 | C→T | R409H (CGC→CAC) | putA ← | fused DNA‑binding transcriptional repressor/proline dehydrogenase/1‑pyrroline‑5‑carboxylate dehydrogenase PutA |
| RA | 1,102,774 | C→T | T141T (ACG→ACA) | csgD ← | DNA‑binding transcriptional dual regulator CsgD |
| RA | 1,105,847 | G→A | G10S (GGT→AGT) | ymdB → | 2'‑O‑acetyl‑ADP‑ribose deacetylase, regulator of RNase III activity |
| RA | 1,123,823 | 2 bp→AG | coding (231‑232/648 nt) | grxB ← | reduced glutaredoxin 2 |
| RA | 1,147,792 | T→A | S58T (TCG→ACG) | plsX → | putative phosphate acyltransferase |
| RA | 1,158,298 | C→T | L144F (CTT→TTT) | ptsG → | glucose‑specific PTS enzyme IIBC component |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,176,122 | C→T | V232V (GTC→GTT) | lolC → | lipoprotein release complex ‑ inner membrane subunit |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,194,922 | G→A | T10T (ACC→ACT) | rluE ← | 23S rRNA pseudouridine(2457) synthase |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,277 | C→T | N385N (AAC→AAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,280 | G→C | A386A (GCG→GCC) | icd → | isocitrate dehydrogenase |
| RA | 1,196,283 | A→G | K387K (AAA→AAG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,292 | C→T | T390T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,304 | G→A | E394E (GAG→GAA) | icd → | isocitrate dehydrogenase |
| RA | 1,222,119 | G→A | intergenic (+2918/+186) | ymgF → / ← ymgD | inner membrane protein YmgF/PF16456 family protein YmgD |
| RA | 1,222,525 | G→A | A37V (GCA→GTA) | ymgD ← | PF16456 family protein YmgD |
| RA | 1,247,587 | G→A | intergenic (‑211/+109) | treA ← / ← dhaM | periplasmic trehalase/dihydroxyacetone kinase subunit M |
| RA | 1,253,002 | C→T | intergenic (+17/+83) | dhaR → / ← ycgV | DNA‑binding transcriptional dual regulator DhaR/putative autotransporter adhesin YcgV |
| JC JC | 1,293,196 | IS5 (–) +4 bp | intergenic (‑274/‑328) | hns ← / → tdk | DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,301,976 | +T | coding (795/1632 nt) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,301,979 | A→C | E266D (GAA→GAC) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,357,202 | C→T | intergenic (‑92/+221) | sapA ← / ← ymjA | putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA |
| RA | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| RA | 1,380,222 | G→A | W25* (TGG→TGA) | ycjU → | beta‑phosphoglucomutase |
| RA | 1,381,927 | G→A | intergenic (+1120/‑20) | ycjU → / → ompG | beta‑phosphoglucomutase/outer membrane porin G |
| RA | 1,405,758 | G→A | intergenic (‑7/‑221) | mcaS ← / → smrA | small regulatory RNA McaS/DNA endonuclease SmrA |
| RA | 1,407,851 | G→A | intergenic (‑56/‑138) | dgcM ← / → ynaN | diguanylate cyclase DgcM/protein YnaN |
| RA | 1,489,491 | G→A | L420L (CTG→CTA) | aldA → | aldehyde dehydrogenase A |
| RA | 1,497,385 | 4 bp→CAA | coding (530‑533/1656 nt) | opgD → | glucans biosynthesis protein D |
| RA | 1,609,148 | G→A | intergenic (‑126/+81) | yneE ← / ← uxaB | PF01062 family inner membrane protein YneE/tagaturonate reductase |
| RA | 1,629,247 | C→T | I11I (ATC→ATT) | ydfZ → | putative selenoprotein YdfZ |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,667,460 | G→A | Q369* (CAG→TAG) | mlc ← | DNA‑binding transcriptional repressor Mlc |
| RA | 1,748,841 | C→T | R240K (AGA→AAA) | ydhT ← | uncharacterized protein YdhT |
| RA | 1,751,024 | C→A | intergenic (‑11/+53) | ydhX ← / ← ydhW | putative 4Fe‑4S ferredoxin‑like protein YdhX/uncharacterized protein YdhW |
| RA | 1,764,017 | C→T | intergenic (‑8/+1) | sufB ← / ← sufA | Fe‑S cluster scaffold complex subunit SufB/iron‑sulfur cluster insertion protein SufA |
| RA | 1,795,254 | T→G | *100S (TAA→TCA) | ihfA ← | integration host factor subunit alpha |
| RA | 1,797,083 | C→T | V288M (GTG→ATG) | pheT ← | phenylalanine‑‑tRNA ligase subunit beta |
| RA | 1,848,300 | 2 bp→TT | coding (376‑377/552 nt) | ydjA ← | putative oxidoreductase YdjA |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (+) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| RA | 1,932,745 | C→T | W4* (TGG→TGA) | eda ← | KHG/KDPG aldolase |
| RA | 1,962,172 | C→T | A67A (GCC→GCT) | yecT → | protein YecT |
| RA | 1,977,215 | (A)8→7 | noncoding (88/95 nt) | motR ← | small RNA MotR |
| RA | 1,996,093 | G→A | intergenic (+51/+17) | yecF → / ← sdiA | DUF2594 domain‑containing protein YecF/DNA‑binding transcriptional dual regulator SdiA |
| RA | 1,998,749 | C→T | L244L (CTG→CTA) | dcyD ← | D‑cysteine desulfhydrase |
| RA | 2,017,589 | A→C | I346L (ATC→CTC) | fliI → | flagellar export ATPase FliI |
| RA | 2,028,651 | G→A | A239V (GCG→GTG) | yedI ← | DUF808 domain‑containing inner membrane protein YedI |
| RA | 2,040,433 | C→A | A319D (GCC→GAC) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| RA | 2,041,278 | G→A | intergenic (+160/‑97) | msrQ → / → zinT | membrane‑bound flavocytochrome MsrQ/metal‑binding protein ZinT |
| RA | 2,052,885 | G→A | intergenic (+871/‑758) | yeeJ → / → shiA | inverse autotransporter adhesin/shikimate:H(+) symporter |
| JC JC | 2,094,553 | IS1 (+) +9 bp | coding (19‑27/591 nt) | hisH → | imidazole glycerol phosphate synthase subunit HisH |
| RA | 2,104,024 | G→T | I162I (ATC→ATA) | wbbK ← | putative glycosyltransferase WbbK |
| RA | 2,111,259 | Δ1 bp | coding (718/900 nt) | rfbD ← | dTDP‑4‑dehydrorhamnose reductase |
| RA | 2,142,598 | G→A | L117L (CTC→CTT) | udk ← | uridine/cytidine kinase |
| MC JC | 2,171,429 | Δ5,958 bp | IS3‑mediated | [gatR]–gatY | [gatR], gatD, gatB, gatA, gatZ, gatY |
| RA | 2,233,609 | C→T | Q4* (CAG→TAG) | yeiS → | DUF2542 domain‑containing protein YeiS |
| RA | 2,242,247 | C→T | G241R (GGG→AGG) | yeiB ← | DUF418 domain‑containing protein YeiB |
| RA | 2,247,134 | A→C | Y467D (TAC→GAC) | lysP ← | lysine:H(+) symporter |
| RA | 2,281,855 | T→C | G408G (GGT→GGC) | radD → | putative DNA repair helicase RadD |
| RA | 2,281,954 | C→A | N441K (AAC→AAA) | radD → | putative DNA repair helicase RadD |
| RA | 2,353,360 | C→T | H238H (CAC→CAT) | glpA → | anaerobic glycerol‑3‑phosphate dehydrogenase subunit A |
| RA | 2,404,402 | G→A | S71L (TCG→TTG) | nuoB ← | NADH:quinone oxidoreductase subunit B |
| RA | 2,531,659 | C→T | P66L (CCG→CTG) | cysZ → | sulfate:H(+) symporter |
| RA | 2,534,506 | C→T | I147I (ATC→ATT) | ptsI → | PTS enzyme I |
| RA | 2,556,984 | G→A | T105I (ACC→ATC) | eutC ← | ethanolamine ammonia‑lyase subunit beta |
| MC JC | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| RA | 2,587,112 | C→T | A461V (GCA→GTA) | narQ → | sensor histidine kinase NarQ |
| RA | 2,609,473 | G→A | L329L (CTG→CTA) | hyfG → | hydrogenase 4 catalytic subunit HyfG |
| RA | 2,744,217 | C→T | G105D (GGT→GAT) | rplS ← | 50S ribosomal subunit protein L19 |
| RA | 2,774,947 | G→A | G544S (GGT→AGT) | yfjW → | uncharacterized protein YfjW |
| RA | 2,867,455 | G→A | Q33* (CAG→TAG) | rpoS ← | RNA polymerase sigma factor RpoS |
| RA | 2,880,635 | T→C | L138L (TTA→TTG) | casD ← | type I‑E CRISPR system Cascade subunit CasD |
| RA | 2,926,772 | C→A | G155G (GGC→GGA) | ppnN → | nucleotide 5'‑monophosphate nucleosidase |
| RA | 2,942,306 | G→A | Q88* (CAG→TAG) | gcvA ← | DNA‑binding transcriptional dual regulator GcvA |
| RA | 3,025,601 | (T)5→4 | coding (1251/1401 nt) | xanQ → | xanthine:H(+) symporter XanQ |
| RA | 3,070,858 | T→G | K129N (AAA→AAC) | fbaA ← | fructose‑bisphosphate aldolase class II |
| RA | 3,087,508 | C→T | P268L (CCA→CTA) | metK → | methionine adenosyltransferase |
| RA | 3,134,479 | C→T | Q117* (CAG→TAG) | yghT → | putative ATP‑binding protein YghT |
| RA | 3,167,148 | G→A | H191Y (CAT→TAT) | ygiS ← | putative deoxycholate binding periplasmic protein |
| RA | 3,207,549 | Δ1 bp | coding (179/606 nt) | ttdB → | L(+)‑tartrate dehydratase subunit beta |
| RA | 3,241,106 | A→G | N388S (AAC→AGC) | sstT → | serine/threonine:Na(+) symporter |
| RA | 3,279,276 | C→G | F121L (TTC→TTG) | kbaZ → | putative tagatose‑1,6‑bisphosphate aldolase 1 chaperone |
| RA | 3,296,481 | G→A | V25M (GTG→ATG) | dolP → | division and outer membrane stress‑associated lipid‑binding lipoprotein |
| RA | 3,302,338 | C→A | A285E (GCG→GAG) | ubiU → | ubiquinone biosynthesis protein UbiU |
| RA | 3,329,743 | G→T | D261Y (GAT→TAT) | dacB → | peptidoglycan DD‑endopeptidase DacB |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,411,689 | G→T | E13* (GAA→TAA) | yhdJ → | DNA adenine methyltransferase |
| RA | 3,433,900 | C→T | L71L (CTA→TTA) | def → | peptide deformylase |
| RA | 3,465,502 | G→A | E141K (GAG→AAG) | gspM → | Type II secretion system protein GspM |
| RA | 3,474,424 | T→G | K43N (AAA→AAC) | rpsL ← | 30S ribosomal subunit protein S12 |
| RA | 3,486,502 | C→T | T128I (ACT→ATT) | crp → | DNA‑binding transcriptional dual regulator CRP |
| RA | 3,511,466 | C→T | V293V (GTG→GTA) | yhfZ ← | putative DNA‑binding transcriptional regulator YhfZ |
| RA | 3,524,913 | C→T | F681F (TTC→TTT) | mrcA → | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA |
| RA | 3,555,047 | 2 bp→TG | coding (1963‑1964/2706 nt) | malT → | DNA‑binding transcriptional activator MalT |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,581,222 | A→G | N29D (AAC→GAC) | yhhY → | N‑acetyltransferase YhhY |
| RA | 3,599,487 | C→T | A58T (GCT→ACT) | livJ ← | branched chain amino acid/phenylalanine ABC transporter periplasmic binding protein |
| RA | 3,602,471 | C→T | D93N (GAC→AAC) | ftsE ← | cell division protein FtsE |
| RA | 3,618,809 | C→T | T74T (ACC→ACT) | nikR → | DNA‑binding transcriptional repressor NikR |
| RA | 3,647,428 | C→T | A377V (GCG→GTG) | gor → | glutathione reductase (NADPH) |
| RA | 3,670,329 | C→T | L246L (CTC→CTT) | treF → | cytoplasmic trehalase |
| RA | 3,685,480 | C→T | E47K (GAA→AAA) | pdeK ← | c‑di‑GMP phosphodiesterase PdeK |
| RA | 3,707,947 | C→A | intergenic (‑242/+669) | dppA ← / ← proK | dipeptide ABC transporter periplasmic binding protein/tRNA‑Pro |
| RA | 3,719,429 | G→A | intergenic (‑385/‑49) | yiaF ← / → yiaG | DUF3053 domain‑containing protein YiaF/putative DNA‑binding transcriptional regulator YiaG |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,729,440 | 2 bp→TT | noncoding (105‑106/160 nt) | xylZ ← | small RNA XylZ |
| RA | 3,730,560 | C→T | W69* (TGG→TAG) | xylA ← | xylose isomerase |
| RA | 3,737,783 | C→T | T96I (ACC→ATC) | malS → | alpha‑amylase |
| RA | 3,770,539 | C→T | V281M (GTG→ATG) | yibH ← | inner membrane protein YibH |
| RA | 3,772,207 | C→T | intergenic (‑463/‑74) | yibI ← / → mtlA | DUF3302 domain‑containing protein YibI/mannitol‑specific PTS enzyme IICBA component |
| RA | 3,773,173 | Δ1 bp | coding (893/1914 nt) | mtlA → | mannitol‑specific PTS enzyme IICBA component |
| RA | 3,773,176 | C→T | S299F (TCT→TTT) | mtlA → | mannitol‑specific PTS enzyme IICBA component |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,926,991 | G→A | L5L (CTG→TTG) | asnC ← | DNA‑binding transcriptional dual regulator AsnC |
| RA | 3,966,530 | 2 bp→TT | coding (114‑115/1260 nt) | rho → | transcription termination factor Rho |
| JC JC | 4,044,847 | IS5 (+) +4 bp | coding (649‑652/1431 nt) | yihF → | DUF945 domain‑containing protein YihF |
| RA | 4,081,749 | G→A | P38S (CCG→TCG) | fdoI ← | formate dehydrogenase O subunit gamma |
| RA | 4,095,026 | G→A | D319D (GAC→GAT) | rhaA ← | L‑rhamnose isomerase |
| RA | 4,096,144 | G→A | G435G (GGC→GGT) | rhaB ← | rhamnulokinase |
| JC JC | 4,124,494 | IS2 (+) +5 bp | intergenic (‑38/+114) | cytR ← / ← priA | DNA‑binding transcriptional repressor CytR/primosomal protein N' |
| RA | 4,133,270 | C→T | Q219* (CAG→TAG) | metF → | 5,10‑methylenetetrahydrofolate reductase |
| RA | 4,138,436 | C→T | L200L (CTG→CTA) | gldA ← | L‑1,2‑propanediol dehydrogenase/glycerol dehydrogenase |
| RA | 4,145,137 | C→T | T381T (ACC→ACT) | pflD → | putative formate acetyltransferase 2 |
| RA | 4,166,554 | C→T | intergenic (+269/‑105) | murI → / → rrsB | glutamate racemase/16S ribosomal RNA |
| RA | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| RA | 4,256,705 | C→T | R23R (CGC→CGT) | dgkA → | diacylglycerol kinase |
| RA | 4,259,570 | G→A | A145V (GCA→GTA) | zur ← | DNA‑binding transcriptional repressor Zur |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,307,944 | C→T | A179T (GCA→ACA) | alsE ← | D‑allulose‑6‑phosphate 3‑epimerase |
| RA | 4,322,288 | A→G | F45F (TTT→TTC) | phnF ← | putative transcriptional regulator PhnF |
| RA | 4,325,000 | C→T | G56S (GGC→AGC) | phnC ← | phosphonate/phosphate ABC transporter ATP binding subunit |
| RA | 4,325,644 | C→T | S33N (AGC→AAC) | yjdN ← | PF06983 family protein YjdN |
| RA | 4,331,890 | C→T | L463L (CTC→CTT) | proP → | osmolyte:H(+) symporter ProP |
| RA | 4,437,890 | C→T | Q62* (CAG→TAG) | ytfI → | protein YtfI |
| JC JC | 4,440,465 | IS3 (–) +3 bp | coding (749‑751/1344 nt) | paeA ← | putative cadaverine/putrescine exporter |
| RA | 4,473,900 | C→T | G52R (GGA→AGA) | bdcA ← | c‑di‑GMP‑binding biofilm dispersal mediator protein |
| RA | 4,475,493 | T→C | F19F (TTT→TTC) | yjgL → | protein YjgL |
| RA | 4,476,605 | G→A | S390N (AGC→AAC) | yjgL → | protein YjgL |
| RA | 4,489,016 | C→T | E350K (GAA→AAA) | yjgR ← | DUF853 domain‑containing protein YjgR |
| RA | 4,510,238 | T→G | intergenic (+445/+452) | insO → / ← fecE | IS911B regulator fragment/ferric citrate ABC transporter ATP binding subunit |
| JC JC | 4,542,042 | IS1 (+) +8 bp | coding (6‑13/597 nt) | fimE → | regulator for fimA |
| RA | 4,544,413 | G→A | G37E (GGA→GAA) | fimC → | type 1 fimbriae periplasmic chaperone |
| RA | 4,549,043 | T→G | L79R (CTG→CGG) | fimH → | type 1 fimbriae D‑mannose specific adhesin |
| RA | 4,625,303 | G→A | G137S (GGC→AGC) | serB → | phosphoserine phosphatase |
| RA | 4,636,925 | G→C | R77P (CGC→CCC) | creC → | sensory histidine kinase CreC |
| RA | 4,638,240 | G→A | L21L (TTG→TTA) | creD → | putative inner membrane protein CreD |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 731314–731469 | 732187–731990 | 522–874 | 29 [27] | [27] 28 | rhsC | rhs element protein RhsC |
| * | * | ÷ | NC_000913 | 1196316 | 1211460 | 15145 | 28 [24] | [26] 30 | [icd]–mcrA | [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1978503–1979270 | 1979336 | 67–834 | 105 [3] | [0] 105 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 3423822–3424233 | 3424448–3424239 | 7–627 | 29 [27] | [27] 28 | [rrlD] | [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1397241 | NA (NA) | 89 (1.200) +59 bp |
58/466 | 0.1 | 97.4% | intergenic (+149/‑124) | insH4/ynaJ | IS5 family transposase and trans‑activator/DUF2534 domain‑containing protein YnaJ |
| ? | NC_000913 | = 1978502 | 3 (0.030) | intergenic (‑305/+16) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB | |||||
| * | ? | NC_000913 | 1979337 = | 0 (0.000) | 106 (1.140) | 65/584 | 0.1 | 100% | intergenic (‑122/‑416) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102943 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||