#=GENOME_DIFF	1.0
#=CREATED	14:21:49 10 Oct 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_run15_rmdup_trimmng-adaptors-polyG/ME8469_S12_R1R2_RMDUP -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8469_S12_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz /ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8469_S12_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8469_S12_R1_RMDUP_RM-R2-DUP.cutadapt.fastq.gz
#=READSEQ	/ld1/breseq_work/20250912_VH01894_36_AAGTVTVM5_QC/RUN15_RMDUP/results/p05_trimmed_fastq_by_cutadapt_-m30/ME8469_S12_R2_RMDUP_RM-R1-DUP.cutadapt.fastq.gz
#=CONVERTED-BASES	441666756
#=CONVERTED-READS	1508854
#=INPUT-BASES	441745233
#=INPUT-READS	1509122
#=MAPPED-BASES	427414956
#=MAPPED-READS	1461209
SNP	1	190	NC_000913	972	A
SNP	2	193	NC_000913	71170	C
SNP	3	194	NC_000913	81044	T
SNP	4	195	NC_000913	81102	A
SNP	5	196	NC_000913	85203	T
SNP	6	197	NC_000913	154182	T
SNP	7	198	NC_000913	156068	G
MOB	8	435,436	NC_000913	156469	IS1	-1	9
MOB	9	433,437	NC_000913	168803	IS1	1	9
SNP	10	199	NC_000913	223560	A
SNP	11	200	NC_000913	246985	T
DEL	12	423,438	NC_000913	257908	776
SNP	13	201	NC_000913	284535	G
SNP	14	202	NC_000913	290892	T
SNP	15	203	NC_000913	292019	T
SNP	16	205	NC_000913	309381	T
SNP	17	206	NC_000913	309985	A
MOB	18	434,439	NC_000913	362204	IS1	-1	9
SNP	19	208	NC_000913	402007	T
SNP	20	209	NC_000913	410666	T
SNP	21	210	NC_000913	421027	T
SNP	22	212	NC_000913	456711	G
SNP	23	213	NC_000913	472849	G
SNP	24	214	NC_000913	495622	T
SNP	25	215	NC_000913	534742	A
SNP	26	216	NC_000913	547891	T
DEL	27	424,440	NC_000913	575786	3398	mediated=IS5
SNP	28	217	NC_000913	582597	T
SNP	29	218	NC_000913	690948	A
SNP	30	219	NC_000913	700038	A
SUB	31	223,224	NC_000913	809217	2	AG
SNP	32	226	NC_000913	1073610	A
SNP	33	227	NC_000913	1077657	T
SNP	34	228	NC_000913	1102774	T
SNP	35	229	NC_000913	1105847	A
SUB	36	230,231	NC_000913	1123823	2	AG
SNP	37	232	NC_000913	1147792	A
SNP	38	233	NC_000913	1158298	T
SNP	39	234	NC_000913	1169836	G
SNP	40	235	NC_000913	1176122	T
SNP	41	236	NC_000913	1189980	G
SNP	42	237	NC_000913	1194922	A
SNP	43	238	NC_000913	1196220	T
SNP	44	239	NC_000913	1196232	T
SNP	45	240	NC_000913	1196245	C
SNP	46	241	NC_000913	1196247	G
SNP	47	242	NC_000913	1196277	T
SNP	48	243	NC_000913	1196280	C
SNP	49	244	NC_000913	1196283	G
SNP	50	245	NC_000913	1196292	T
SNP	51	246	NC_000913	1196304	A
SNP	52	250	NC_000913	1222119	A
SNP	53	251	NC_000913	1222525	A
SNP	54	252	NC_000913	1247587	A
SNP	55	253	NC_000913	1253002	T
MOB	56	448,449	NC_000913	1293196	IS5	-1	4
DEL	57	427,450	NC_000913	1299499	1199
INS	58	255	NC_000913	1301976	T
SNP	59	256	NC_000913	1301979	C
SNP	60	257	NC_000913	1301992	T
SNP	61	258	NC_000913	1306736	G
SNP	62	259	NC_000913	1337394	G
SNP	63	261	NC_000913	1357202	T
SNP	64	262	NC_000913	1358859	C
SNP	65	263	NC_000913	1380222	A
SNP	66	264	NC_000913	1381927	A
SNP	67	265	NC_000913	1405758	A
SNP	68	266	NC_000913	1407851	A
SNP	69	268	NC_000913	1489491	A
SUB	70	269,270,271,272	NC_000913	1497385	4	CAA
SNP	71	275	NC_000913	1609148	A
SNP	72	276	NC_000913	1629247	T
SNP	73	278	NC_000913	1643679	T
SNP	74	279	NC_000913	1652331	C
SNP	75	280	NC_000913	1667460	A
SNP	76	283	NC_000913	1748841	T
SNP	77	284	NC_000913	1751024	A
SNP	78	285	NC_000913	1764017	T
SNP	79	286	NC_000913	1795254	G
SNP	80	287	NC_000913	1797083	T
SUB	81	289,290	NC_000913	1848300	2	TT
MOB	82	452,453	NC_000913	1879829	IS186	1	6	del_end=1	del_start=1
SNP	83	291	NC_000913	1894839	C
SNP	84	293	NC_000913	1932745	T
SNP	85	294	NC_000913	1962172	T
DEL	86	295	NC_000913	1977215	1	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=8	repeat_seq=A
SNP	87	296	NC_000913	1996093	A
SNP	88	297	NC_000913	1998749	T
SNP	89	298	NC_000913	2017589	C
SNP	90	299	NC_000913	2028651	A
SNP	91	300	NC_000913	2040433	A
SNP	92	301	NC_000913	2041278	A
SNP	93	302	NC_000913	2052885	A
MOB	94	454,455	NC_000913	2094553	IS1	1	9
SNP	95	303	NC_000913	2104024	T
DEL	96	304	NC_000913	2111259	1
SNP	97	305	NC_000913	2142598	A
DEL	98	429,458	NC_000913	2171429	5958	mediated=IS3
SNP	99	306	NC_000913	2233609	T
SNP	100	308	NC_000913	2242247	T
SNP	101	309	NC_000913	2247134	C
SNP	102	310	NC_000913	2281855	C
SNP	103	311	NC_000913	2281954	A
SNP	104	313	NC_000913	2353360	T
SNP	105	315	NC_000913	2404402	A
SNP	106	319	NC_000913	2531659	T
SNP	107	320	NC_000913	2534506	T
SNP	108	321	NC_000913	2556984	A
DEL	109	430,461	NC_000913	2558699	6790
SNP	110	322	NC_000913	2587112	T
SNP	111	323	NC_000913	2609473	A
SNP	112	325	NC_000913	2744217	T
SNP	113	327	NC_000913	2774947	A
SNP	114	331	NC_000913	2867455	A
SNP	115	332	NC_000913	2880635	C
SNP	116	333	NC_000913	2926772	A
SNP	117	334	NC_000913	2942306	A
DEL	118	335	NC_000913	3025601	1	repeat_length=1	repeat_new_copies=4	repeat_ref_copies=5	repeat_seq=T
SNP	119	339	NC_000913	3070858	G
SNP	120	340	NC_000913	3087508	T
SNP	121	341	NC_000913	3134479	T
SNP	122	342	NC_000913	3167148	A
DEL	123	343	NC_000913	3207549	1
SNP	124	345	NC_000913	3241106	G
SNP	125	347	NC_000913	3279276	G
SNP	126	349	NC_000913	3296481	A
SNP	127	350	NC_000913	3302338	A
SNP	128	351	NC_000913	3329743	T
SNP	129	352	NC_000913	3388041	G
SNP	130	353	NC_000913	3411689	T
SNP	131	354	NC_000913	3433900	T
SNP	132	355	NC_000913	3465502	A
SNP	133	356	NC_000913	3474424	G
SNP	134	357	NC_000913	3486502	T
SNP	135	358	NC_000913	3511466	T
SNP	136	359	NC_000913	3524913	T
SUB	137	360,361	NC_000913	3555047	2	TG
INS	138	362	NC_000913	3560455	G
SNP	139	363	NC_000913	3581222	G
SNP	140	364	NC_000913	3599487	T
SNP	141	365	NC_000913	3602471	T
SNP	142	366	NC_000913	3618809	T
SNP	143	370	NC_000913	3647428	T
SNP	144	371	NC_000913	3670329	T
SNP	145	372	NC_000913	3685480	T
SNP	146	373	NC_000913	3707947	A
SNP	147	374	NC_000913	3719429	A
SNP	148	375	NC_000913	3725176	G
SUB	149	376,377	NC_000913	3729440	2	TT
SNP	150	378	NC_000913	3730560	T
SNP	151	379	NC_000913	3737783	T
SNP	152	382	NC_000913	3770539	T
SNP	153	383	NC_000913	3772207	T
DEL	154	384	NC_000913	3773173	1
SNP	155	385	NC_000913	3773176	T
INS	156	386	NC_000913	3815883	C
SNP	157	389	NC_000913	3926991	A
SUB	158	390,391	NC_000913	3966530	2	TT
MOB	159	467,468	NC_000913	4044847	IS5	1	4
SNP	160	393	NC_000913	4081749	A
SNP	161	394	NC_000913	4095026	A
SNP	162	395	NC_000913	4096144	A
MOB	163	464,471	NC_000913	4124494	IS2	1	5
SNP	164	396	NC_000913	4133270	T
SNP	165	397	NC_000913	4138436	T
SNP	166	398	NC_000913	4145137	T
SNP	167	399	NC_000913	4166554	T
SNP	168	400	NC_000913	4223638	C
SNP	169	401	NC_000913	4256705	T
SNP	170	402	NC_000913	4259570	A
INS	171	403,404	NC_000913	4296381	GC
SNP	172	405	NC_000913	4307944	T
SNP	173	406	NC_000913	4322288	G
SNP	174	407	NC_000913	4325000	T
SNP	175	408	NC_000913	4325644	T
SNP	176	409	NC_000913	4331890	T
SNP	177	412	NC_000913	4437890	T
MOB	178	457,459	NC_000913	4440465	IS3	-1	3
SNP	179	413	NC_000913	4473900	T
SNP	180	414	NC_000913	4475493	C
SNP	181	415	NC_000913	4476605	A
SNP	182	416	NC_000913	4489016	T
SNP	183	417	NC_000913	4510238	G
MOB	184	465,466	NC_000913	4542042	IS1	1	8
SNP	185	418	NC_000913	4544413	A
SNP	186	419	NC_000913	4549043	G
SNP	187	420	NC_000913	4625303	A
SNP	188	421	NC_000913	4636925	C
SNP	189	422	NC_000913	4638240	A
RA	190	.	NC_000913	972	0	G	A	bias_e_value=3830780	bias_p_value=0.825304	consensus_score=212.8	fisher_strand_p_value=0.470588	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=36/31	major_frequency=9.853e-01	minor_base=C	minor_cov=0/1	new_cov=36/31	polymorphism_frequency=9.853e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/32
RA	191	.	NC_000913	12152	0	G	T	bias_e_value=4.32032	bias_p_value=9.30772e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.4	fisher_strand_p_value=5.23952e-08	frequency=3.529e-01	ks_quality_p_value=1	major_base=G	major_cov=32/45	major_frequency=6.471e-01	minor_base=T	minor_cov=0/42	new_cov=0/42	polymorphism_frequency=3.529e-01	polymorphism_score=17.3	prediction=polymorphism	ref_cov=32/45	total_cov=32/87
RA	192	.	NC_000913	58065	0	C	A	bias_e_value=0.0708962	bias_p_value=1.52739e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=142.6	fisher_strand_p_value=6.91367e-10	frequency=3.548e-01	ks_quality_p_value=1	major_base=C	major_cov=24/36	major_frequency=6.452e-01	minor_base=A	minor_cov=33/0	new_cov=33/0	polymorphism_frequency=3.548e-01	polymorphism_score=22.2	prediction=polymorphism	ref_cov=24/36	total_cov=57/36
RA	193	.	NC_000913	71170	0	T	C	bias_e_value=4641140	bias_p_value=0.999889	consensus_score=375.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.985117	major_base=C	major_cov=50/47	major_frequency=9.798e-01	minor_base=A	minor_cov=1/1	new_cov=50/47	polymorphism_frequency=9.798e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/0	total_cov=51/48
RA	194	.	NC_000913	81044	0	C	T	consensus_score=289.8	frequency=1	major_base=T	major_cov=41/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/37
RA	195	.	NC_000913	81102	0	G	A	consensus_score=271.1	frequency=1	major_base=A	major_cov=44/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/38
RA	196	.	NC_000913	85203	0	C	T	consensus_score=362.0	frequency=1	major_base=T	major_cov=54/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/47
RA	197	.	NC_000913	154182	0	C	T	consensus_score=482.1	frequency=1	major_base=T	major_cov=65/73	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/73	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/73
RA	198	.	NC_000913	156068	0	A	G	consensus_score=484.2	frequency=1	major_base=G	major_cov=59/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/69
RA	199	.	NC_000913	223560	0	T	A	consensus_score=401.9	frequency=1	major_base=A	major_cov=60/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/59
RA	200	.	NC_000913	246985	0	C	T	consensus_score=306.9	frequency=1	major_base=T	major_cov=39/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/48
RA	201	.	NC_000913	284535	0	T	G	consensus_score=124.2	frequency=1	major_base=G	major_cov=15/20	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=15/20	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=15/20
RA	202	.	NC_000913	290892	0	C	T	consensus_score=24.3	frequency=1	major_base=T	major_cov=5/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/5
RA	203	.	NC_000913	292019	0	C	T	consensus_score=406.3	frequency=1	major_base=T	major_cov=64/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/48
RA	204	.	NC_000913	294237	0	G	T	bias_e_value=6.73899e-12	bias_p_value=1.45185e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=493.8	fisher_strand_p_value=3.16306e-20	frequency=2.167e-01	ks_quality_p_value=1	major_base=G	major_cov=115/44	major_frequency=7.833e-01	minor_base=T	minor_cov=0/44	new_cov=0/44	polymorphism_frequency=2.167e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=115/44	total_cov=116/88
RA	205	.	NC_000913	309381	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=336.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=45/55	major_frequency=9.901e-01	minor_base=G	minor_cov=0/1	new_cov=45/55	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/56
RA	206	.	NC_000913	309985	0	T	A	consensus_score=358.9	frequency=1	major_base=A	major_cov=50/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/53
RA	207	.	NC_000913	332975	0	C	A	bias_e_value=0.0179876	bias_p_value=3.87525e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.4	fisher_strand_p_value=1.64717e-10	frequency=3.071e-01	ks_quality_p_value=1	major_base=C	major_cov=36/52	major_frequency=6.929e-01	minor_base=A	minor_cov=38/1	new_cov=38/1	polymorphism_frequency=3.071e-01	polymorphism_score=19.3	prediction=polymorphism	ref_cov=36/52	total_cov=74/53
RA	208	.	NC_000913	402007	0	C	T	consensus_score=302.7	frequency=1	major_base=T	major_cov=50/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/34
RA	209	.	NC_000913	410666	0	C	T	consensus_score=312.9	frequency=1	major_base=T	major_cov=42/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/54
RA	210	.	NC_000913	421027	0	C	T	bias_e_value=2810240	bias_p_value=0.605439	consensus_score=294.7	fisher_strand_p_value=0.256454	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=36/45	major_frequency=9.643e-01	minor_base=G	minor_cov=0/3	new_cov=36/45	polymorphism_frequency=9.643e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/48
RA	211	.	NC_000913	430299	0	C	A	bias_e_value=5033.76	bias_p_value=0.00108448	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.8	fisher_strand_p_value=0.000106913	frequency=3.034e-01	ks_quality_p_value=1	major_base=C	major_cov=39/23	major_frequency=6.966e-01	minor_base=A	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=3.034e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=39/23	total_cov=67/24
RA	212	.	NC_000913	456711	0	C	G	bias_e_value=4641650	bias_p_value=1	consensus_score=404.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=45/65	major_frequency=9.910e-01	minor_base=T	minor_cov=0/1	new_cov=45/65	polymorphism_frequency=9.910e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/66
RA	213	.	NC_000913	472849	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=396.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=55/49	major_frequency=9.905e-01	minor_base=T	minor_cov=1/0	new_cov=55/49	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/49
RA	214	.	NC_000913	495622	0	C	T	bias_e_value=2415180	bias_p_value=0.520328	consensus_score=332.4	fisher_strand_p_value=0.199032	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=54/42	major_frequency=9.796e-01	minor_base=G	minor_cov=0/2	new_cov=54/42	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/44
RA	215	.	NC_000913	534742	0	G	A	consensus_score=221.1	frequency=1	major_base=A	major_cov=31/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/31
RA	216	.	NC_000913	547891	0	C	T	consensus_score=189.0	frequency=1	major_base=T	major_cov=30/23	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=30/23	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=30/23
RA	217	.	NC_000913	582597	0	C	T	bias_e_value=3824310	bias_p_value=0.823911	consensus_score=391.7	fisher_strand_p_value=0.471074	frequency=1	ks_quality_p_value=0.995054	major_base=T	major_cov=64/56	major_frequency=9.917e-01	minor_base=C	minor_cov=0/1	new_cov=64/56	polymorphism_frequency=9.917e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=0/1	total_cov=64/57
RA	218	.	NC_000913	690948	0	G	A	bias_e_value=3534650	bias_p_value=0.761508	consensus_score=273.7	fisher_strand_p_value=0.395062	frequency=1	ks_quality_p_value=0.998766	major_base=A	major_cov=31/49	major_frequency=9.877e-01	minor_base=C	minor_cov=1/0	new_cov=31/49	polymorphism_frequency=9.877e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=0/0	total_cov=32/49
RA	219	.	NC_000913	700038	0	G	A	consensus_score=276.0	frequency=1	major_base=A	major_cov=47/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/29
RA	220	.	NC_000913	731374	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=35.9	deleted=1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=10/5	major_frequency=9.375e-01	minor_base=C	minor_cov=1/0	new_cov=10/5	polymorphism_frequency=9.375e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/5
RA	221	.	NC_000913	731375	0	C	T	consensus_score=36.2	deleted=1	frequency=1	major_base=T	major_cov=11/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/5
RA	222	.	NC_000913	731392	0	A	G	consensus_score=34.0	deleted=1	frequency=1	major_base=G	major_cov=9/5	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=9/5	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=9/5
RA	223	.	NC_000913	809217	0	C	A	consensus_score=230.8	frequency=1	major_base=A	major_cov=38/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/27
RA	224	.	NC_000913	809218	0	A	G	consensus_score=242.7	frequency=1	major_base=G	major_cov=38/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/27
RA	225	.	NC_000913	847955	0	G	A	bias_e_value=0.00164143	bias_p_value=3.53631e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.1	fisher_strand_p_value=1.35899e-11	frequency=2.754e-01	ks_quality_p_value=1	major_base=G	major_cov=57/43	major_frequency=7.246e-01	minor_base=A	minor_cov=0/38	new_cov=0/38	polymorphism_frequency=2.754e-01	polymorphism_score=47.6	prediction=polymorphism	ref_cov=57/43	total_cov=57/81
RA	226	.	NC_000913	1073610	0	G	A	consensus_score=264.3	frequency=1	major_base=A	major_cov=36/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/41
RA	227	.	NC_000913	1077657	0	C	T	consensus_score=265.8	frequency=1	major_base=T	major_cov=38/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/40
RA	228	.	NC_000913	1102774	0	C	T	consensus_score=403.6	frequency=1	major_base=T	major_cov=60/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=60/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=60/52
RA	229	.	NC_000913	1105847	0	G	A	consensus_score=371.4	frequency=1	major_base=A	major_cov=46/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/61
RA	230	.	NC_000913	1123823	0	G	A	consensus_score=211.4	frequency=1	major_base=A	major_cov=32/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/31
RA	231	.	NC_000913	1123824	0	T	G	consensus_score=231.4	frequency=1	major_base=G	major_cov=32/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/31
RA	232	.	NC_000913	1147792	0	T	A	bias_e_value=2088190	bias_p_value=0.44988	consensus_score=164.4	fisher_strand_p_value=0.158187	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=17/28	major_frequency=9.574e-01	minor_base=C	minor_cov=2/0	new_cov=17/28	polymorphism_frequency=9.574e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/0	total_cov=19/28
RA	233	.	NC_000913	1158298	0	C	T	consensus_score=256.2	frequency=1	major_base=T	major_cov=36/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/40
RA	234	.	NC_000913	1169836	0	A	G	consensus_score=261.1	frequency=1	major_base=G	major_cov=37/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/36
RA	235	.	NC_000913	1176122	0	C	T	bias_e_value=3612400	bias_p_value=0.778258	consensus_score=332.2	fisher_strand_p_value=0.413043	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=37/54	major_frequency=9.891e-01	minor_base=C	minor_cov=1/0	new_cov=37/54	polymorphism_frequency=9.891e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=38/54
RA	236	.	NC_000913	1189980	0	A	G	consensus_score=346.6	frequency=1	major_base=G	major_cov=45/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/45
RA	237	.	NC_000913	1194922	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=375.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=56/55	major_frequency=9.911e-01	minor_base=C	minor_cov=1/0	new_cov=56/55	polymorphism_frequency=9.911e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=57/56
RA	238	.	NC_000913	1196220	0	C	T	consensus_score=122.7	frequency=1	major_base=T	major_cov=14/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/30
RA	239	.	NC_000913	1196232	0	C	T	consensus_score=109.2	frequency=1	major_base=T	major_cov=14/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=14/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=14/26
RA	240	.	NC_000913	1196245	0	T	C	consensus_score=113.4	frequency=1	major_base=C	major_cov=13/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/25
RA	241	.	NC_000913	1196247	0	A	G	consensus_score=111.3	frequency=1	major_base=G	major_cov=13/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=13/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=13/25
RA	242	.	NC_000913	1196277	0	C	T	consensus_score=80.8	frequency=1	major_base=T	major_cov=12/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/19
RA	243	.	NC_000913	1196280	0	G	C	consensus_score=79.4	frequency=1	major_base=C	major_cov=12/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/19
RA	244	.	NC_000913	1196283	0	A	G	consensus_score=87.6	frequency=1	major_base=G	major_cov=12/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/19
RA	245	.	NC_000913	1196292	0	C	T	consensus_score=73.9	frequency=1	major_base=T	major_cov=12/17	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/17	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/17
RA	246	.	NC_000913	1196304	0	G	A	consensus_score=68.6	frequency=1	major_base=A	major_cov=12/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=12/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=12/16
RA	247	.	NC_000913	1196316	0	T	A	consensus_score=61.3	deleted=1	frequency=1	major_base=A	major_cov=11/13	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/13	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/13
RA	248	.	NC_000913	1196325	0	A	G	consensus_score=30.2	deleted=1	frequency=1	major_base=G	major_cov=5/9	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=5/9	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=5/9
RA	249	.	NC_000913	1196352	0	C	A	consensus_score=10.0	deleted=1	frequency=1	major_base=A	major_cov=3/4	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=3/4	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=3/4
RA	250	.	NC_000913	1222119	0	G	A	bias_e_value=3907730	bias_p_value=0.841883	consensus_score=291.6	fisher_strand_p_value=0.494391	frequency=1	ks_quality_p_value=0.997788	major_base=A	major_cov=42/42	major_frequency=9.767e-01	minor_base=C	minor_cov=2/0	new_cov=42/42	polymorphism_frequency=9.767e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/0	total_cov=44/42
RA	251	.	NC_000913	1222525	0	G	A	consensus_score=240.5	frequency=1	major_base=A	major_cov=34/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/36
RA	252	.	NC_000913	1247587	0	G	A	consensus_score=283.1	frequency=1	major_base=A	major_cov=41/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	253	.	NC_000913	1253002	0	C	T	consensus_score=315.5	frequency=1	major_base=T	major_cov=52/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/35
RA	254	.	NC_000913	1293285	0	C	A	bias_e_value=932022	bias_p_value=0.200795	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.6	fisher_strand_p_value=0.0503371	frequency=2.456e-01	ks_quality_p_value=1	major_base=C	major_cov=47/39	major_frequency=7.544e-01	minor_base=A	minor_cov=9/19	new_cov=9/19	polymorphism_frequency=2.456e-01	polymorphism_score=18.6	prediction=polymorphism	ref_cov=47/39	total_cov=56/58
RA	255	.	NC_000913	1301976	1	.	T	bias_e_value=4641640	bias_p_value=0.999997	consensus_score=357.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.997562	major_base=T	major_cov=49/65	major_frequency=9.913e-01	minor_base=.	minor_cov=0/1	new_cov=49/65	polymorphism_frequency=9.913e-01	polymorphism_score=-3.6	prediction=consensus	ref_cov=0/1	total_cov=49/66
RA	256	.	NC_000913	1301979	0	A	C	consensus_score=435.2	frequency=1	major_base=C	major_cov=49/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/66
RA	257	.	NC_000913	1301992	0	A	T	consensus_score=342.1	frequency=1	major_base=T	major_cov=45/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/63
RA	258	.	NC_000913	1306736	0	T	G	consensus_score=247.1	frequency=1	major_base=G	major_cov=41/25	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/25	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/25
RA	259	.	NC_000913	1337394	0	A	G	bias_e_value=3691460	bias_p_value=0.795291	consensus_score=236.3	fisher_strand_p_value=0.432836	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=38/28	major_frequency=9.851e-01	minor_base=T	minor_cov=0/1	new_cov=38/28	polymorphism_frequency=9.851e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/29
RA	260	.	NC_000913	1351463	0	C	A	bias_e_value=699.378	bias_p_value=0.000150674	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.6	fisher_strand_p_value=1.22391e-05	frequency=3.537e-01	ks_quality_p_value=1	major_base=C	major_cov=31/22	major_frequency=6.463e-01	minor_base=A	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.537e-01	polymorphism_score=12.4	prediction=polymorphism	ref_cov=31/22	total_cov=60/22
RA	261	.	NC_000913	1357202	0	C	T	consensus_score=357.7	frequency=1	major_base=T	major_cov=56/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/47
RA	262	.	NC_000913	1358859	0	T	C	consensus_score=285.7	frequency=1	major_base=C	major_cov=38/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/40
RA	263	.	NC_000913	1380222	0	G	A	consensus_score=278.4	frequency=1	major_base=A	major_cov=33/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/45
RA	264	.	NC_000913	1381927	0	G	A	consensus_score=246.1	frequency=1	major_base=A	major_cov=31/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/43
RA	265	.	NC_000913	1405758	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=415.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=67/51	major_frequency=9.916e-01	minor_base=C	minor_cov=1/0	new_cov=67/51	polymorphism_frequency=9.916e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=69/51
RA	266	.	NC_000913	1407851	0	G	A	consensus_score=340.0	frequency=1	major_base=A	major_cov=46/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/48
RA	267	.	NC_000913	1427992	0	G	T	bias_e_value=1.93907e-07	bias_p_value=4.17754e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=201.6	fisher_strand_p_value=1.18102e-15	frequency=3.714e-01	ks_quality_p_value=1	major_base=G	major_cov=54/34	major_frequency=6.286e-01	minor_base=T	minor_cov=0/52	new_cov=0/52	polymorphism_frequency=3.714e-01	polymorphism_score=24.5	prediction=polymorphism	ref_cov=54/34	total_cov=54/86
RA	268	.	NC_000913	1489491	0	G	A	consensus_score=341.7	frequency=1	major_base=A	major_cov=49/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/56
RA	269	.	NC_000913	1497385	0	T	C	consensus_score=242.3	frequency=1	major_base=C	major_cov=27/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/37
RA	270	.	NC_000913	1497386	0	T	.	consensus_score=305.7	frequency=1	major_base=.	major_cov=27/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/37
RA	271	.	NC_000913	1497387	0	C	A	consensus_score=234.0	frequency=1	major_base=A	major_cov=27/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/37
RA	272	.	NC_000913	1497388	0	T	A	consensus_score=227.3	frequency=1	major_base=A	major_cov=27/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=27/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/37
RA	273	.	NC_000913	1502770	0	T	C	bias_e_value=121.232	bias_p_value=2.61183e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.3	fisher_strand_p_value=1.83846e-06	frequency=2.637e-01	ks_quality_p_value=1	major_base=T	major_cov=39/28	major_frequency=7.363e-01	minor_base=C	minor_cov=1/23	new_cov=1/23	polymorphism_frequency=2.637e-01	polymorphism_score=19.4	prediction=polymorphism	ref_cov=39/28	total_cov=40/51
RA	274	.	NC_000913	1502772	0	G	A	bias_e_value=25.9525	bias_p_value=5.59122e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.2	fisher_strand_p_value=3.52581e-07	frequency=2.360e-01	ks_quality_p_value=1	major_base=G	major_cov=40/28	major_frequency=7.640e-01	minor_base=A	minor_cov=0/21	new_cov=0/21	polymorphism_frequency=2.360e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=40/28	total_cov=40/50
RA	275	.	NC_000913	1609148	0	G	A	consensus_score=297.7	frequency=1	major_base=A	major_cov=45/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/42
RA	276	.	NC_000913	1629247	0	C	T	consensus_score=291.1	frequency=1	major_base=T	major_cov=43/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/38
RA	277	.	NC_000913	1631903	0	G	T	bias_e_value=0.0306388	bias_p_value=6.60084e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.6	fisher_strand_p_value=2.87364e-10	frequency=3.208e-01	ks_quality_p_value=1	major_base=G	major_cov=42/30	major_frequency=6.792e-01	minor_base=T	minor_cov=0/34	new_cov=0/34	polymorphism_frequency=3.208e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=42/30	total_cov=42/64
RA	278	.	NC_000913	1643679	0	A	T	consensus_score=221.9	frequency=1	major_base=T	major_cov=20/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=20/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=20/49
RA	279	.	NC_000913	1652331	0	T	C	consensus_score=380.4	frequency=1	major_base=C	major_cov=56/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/44
RA	280	.	NC_000913	1667460	0	G	A	bias_e_value=3880680	bias_p_value=0.836057	consensus_score=349.8	fisher_strand_p_value=0.485149	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=48/52	major_frequency=9.901e-01	minor_base=C	minor_cov=1/0	new_cov=48/52	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/52
RA	281	.	NC_000913	1708916	0	A	G	bias_e_value=1343450	bias_p_value=0.289434	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.2	fisher_strand_p_value=0.0829415	frequency=2.222e-01	ks_quality_p_value=1	major_base=A	major_cov=22/13	major_frequency=7.778e-01	minor_base=G	minor_cov=3/7	new_cov=3/7	polymorphism_frequency=2.222e-01	polymorphism_score=12.5	prediction=polymorphism	ref_cov=22/13	total_cov=25/20
RA	282	.	NC_000913	1708930	0	C	A	bias_e_value=3972650	bias_p_value=0.855869	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.9	fisher_strand_p_value=0.513678	frequency=2.157e-01	ks_quality_p_value=1	major_base=C	major_cov=23/17	major_frequency=7.843e-01	minor_base=A	minor_cov=5/6	new_cov=5/6	polymorphism_frequency=2.157e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=23/17	total_cov=28/23
RA	283	.	NC_000913	1748841	0	C	T	consensus_score=214.0	frequency=1	major_base=T	major_cov=39/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/24
RA	284	.	NC_000913	1751024	0	C	A	consensus_score=285.4	frequency=1	major_base=A	major_cov=33/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/45
RA	285	.	NC_000913	1764017	0	C	T	bias_e_value=3536760	bias_p_value=0.761961	consensus_score=266.7	fisher_strand_p_value=0.395062	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/31	major_frequency=9.877e-01	minor_base=C	minor_cov=0/1	new_cov=49/31	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=49/32
RA	286	.	NC_000913	1795254	0	T	G	consensus_score=310.8	frequency=1	major_base=G	major_cov=50/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/37
RA	287	.	NC_000913	1797083	0	C	T	bias_e_value=4641630	bias_p_value=0.999995	consensus_score=174.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996868	major_base=T	major_cov=26/24	major_frequency=9.804e-01	minor_base=C	minor_cov=1/0	new_cov=26/24	polymorphism_frequency=9.804e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=1/0	total_cov=27/24
RA	288	.	NC_000913	1812509	0	G	T	bias_e_value=0.000253419	bias_p_value=5.45967e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=279.4	fisher_strand_p_value=1.95254e-12	frequency=2.643e-01	ks_quality_p_value=1	major_base=G	major_cov=68/35	major_frequency=7.357e-01	minor_base=T	minor_cov=1/36	new_cov=1/36	polymorphism_frequency=2.643e-01	polymorphism_score=25.8	prediction=polymorphism	ref_cov=68/35	total_cov=69/71
RA	289	.	NC_000913	1848300	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=210.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=17/48	major_frequency=9.848e-01	minor_base=C	minor_cov=0/1	new_cov=17/48	polymorphism_frequency=9.848e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=17/49
RA	290	.	NC_000913	1848301	0	C	T	consensus_score=198.9	frequency=1	major_base=T	major_cov=17/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=17/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=17/49
RA	291	.	NC_000913	1894839	0	T	C	consensus_score=334.0	frequency=1	major_base=C	major_cov=43/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/47
RA	292	.	NC_000913	1922815	0	C	A	bias_e_value=11880.1	bias_p_value=0.00255945	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.8	fisher_strand_p_value=0.000278637	frequency=2.642e-01	ks_quality_p_value=1	major_base=C	major_cov=24/54	major_frequency=7.358e-01	minor_base=A	minor_cov=20/8	new_cov=20/8	polymorphism_frequency=2.642e-01	polymorphism_score=13.7	prediction=polymorphism	ref_cov=24/54	total_cov=44/62
RA	293	.	NC_000913	1932745	0	C	T	bias_e_value=3670440	bias_p_value=0.790761	consensus_score=280.8	fisher_strand_p_value=0.428571	frequency=1	ks_quality_p_value=0.997422	major_base=T	major_cov=48/35	major_frequency=9.881e-01	minor_base=C	minor_cov=0/1	new_cov=48/35	polymorphism_frequency=9.881e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/1	total_cov=48/36
RA	294	.	NC_000913	1962172	0	C	T	consensus_score=386.6	frequency=1	major_base=T	major_cov=49/72	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/72	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/72
RA	295	.	NC_000913	1977215	0	A	.	consensus_score=412.4	frequency=1	major_base=.	major_cov=42/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/44
RA	296	.	NC_000913	1996093	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=279.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=45/37	major_frequency=9.880e-01	minor_base=C	minor_cov=1/0	new_cov=45/37	polymorphism_frequency=9.880e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/37
RA	297	.	NC_000913	1998749	0	C	T	consensus_score=226.7	frequency=1	major_base=T	major_cov=32/36	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=32/36	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=32/36
RA	298	.	NC_000913	2017589	0	A	C	consensus_score=157.7	frequency=1	major_base=C	major_cov=18/26	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/26	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/26
RA	299	.	NC_000913	2028651	0	G	A	consensus_score=303.2	frequency=1	major_base=A	major_cov=33/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/48
RA	300	.	NC_000913	2040433	0	C	A	consensus_score=216.0	frequency=1	major_base=A	major_cov=34/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=34/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/32
RA	301	.	NC_000913	2041278	0	G	A	consensus_score=383.7	frequency=1	major_base=A	major_cov=48/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/62
RA	302	.	NC_000913	2052885	0	G	A	consensus_score=336.4	frequency=1	major_base=A	major_cov=55/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/41
RA	303	.	NC_000913	2104024	0	G	T	consensus_score=446.0	frequency=1	major_base=T	major_cov=61/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/66
RA	304	.	NC_000913	2111259	0	G	.	bias_e_value=3453500	bias_p_value=0.744023	consensus_score=480.7	fisher_strand_p_value=0.376238	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=37/63	major_frequency=9.901e-01	minor_base=G	minor_cov=1/0	new_cov=37/63	polymorphism_frequency=9.901e-01	polymorphism_score=-4.5	prediction=consensus	ref_cov=1/0	total_cov=38/63
RA	305	.	NC_000913	2142598	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=385.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/70	major_frequency=9.722e-01	minor_base=G	minor_cov=1/2	new_cov=35/70	polymorphism_frequency=9.722e-01	polymorphism_score=-4.8	prediction=consensus	ref_cov=1/2	total_cov=37/72
RA	306	.	NC_000913	2233609	0	C	T	consensus_score=309.4	frequency=1	major_base=T	major_cov=56/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/28
RA	307	.	NC_000913	2239994	0	G	T	bias_e_value=5.32707e-06	bias_p_value=1.14767e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.8	fisher_strand_p_value=3.59121e-14	frequency=2.818e-01	ks_quality_p_value=1	major_base=G	major_cov=59/20	major_frequency=7.182e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.818e-01	polymorphism_score=11.5	prediction=polymorphism	ref_cov=59/20	total_cov=59/51
RA	308	.	NC_000913	2242247	0	C	T	bias_e_value=3909460	bias_p_value=0.842257	consensus_score=271.4	fisher_strand_p_value=0.493827	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=41/39	major_frequency=9.877e-01	minor_base=G	minor_cov=0/1	new_cov=41/39	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/40
RA	309	.	NC_000913	2247134	0	A	C	bias_e_value=4641540	bias_p_value=0.999976	consensus_score=448.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.993045	major_base=C	major_cov=44/74	major_frequency=9.916e-01	minor_base=G	minor_cov=0/1	new_cov=44/74	polymorphism_frequency=9.916e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/0	total_cov=44/75
RA	310	.	NC_000913	2281855	0	T	C	consensus_score=311.0	frequency=1	major_base=C	major_cov=39/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/44
RA	311	.	NC_000913	2281954	0	C	A	consensus_score=277.3	frequency=1	major_base=A	major_cov=39/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/40
RA	312	.	NC_000913	2288418	0	G	T	bias_e_value=0.0625683	bias_p_value=1.34797e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=207.8	fisher_strand_p_value=6.06562e-10	frequency=2.743e-01	ks_quality_p_value=1	major_base=G	major_cov=49/33	major_frequency=7.257e-01	minor_base=T	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.743e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=49/33	total_cov=49/64
RA	313	.	NC_000913	2353360	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=241.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/40	major_frequency=9.855e-01	minor_base=C	minor_cov=0/1	new_cov=28/40	polymorphism_frequency=9.855e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=28/41
RA	314	.	NC_000913	2384320	0	G	T	bias_e_value=1.17214	bias_p_value=2.52527e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=263.8	fisher_strand_p_value=1.31911e-08	frequency=2.290e-01	ks_quality_p_value=1	major_base=G	major_cov=59/42	major_frequency=7.710e-01	minor_base=T	minor_cov=1/29	new_cov=1/29	polymorphism_frequency=2.290e-01	polymorphism_score=17.6	prediction=polymorphism	ref_cov=59/42	total_cov=60/71
RA	315	.	NC_000913	2404402	0	G	A	consensus_score=287.5	frequency=1	major_base=A	major_cov=64/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/24
RA	316	.	NC_000913	2433340	0	G	T	bias_e_value=8.31721e-05	bias_p_value=1.79186e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.1	fisher_strand_p_value=6.15412e-13	frequency=3.556e-01	ks_quality_p_value=1	major_base=G	major_cov=43/15	major_frequency=6.444e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=3.556e-01	polymorphism_score=18.2	prediction=polymorphism	ref_cov=43/15	total_cov=43/47
RA	317	.	NC_000913	2477265	0	A	C	bias_e_value=1.02892	bias_p_value=2.21671e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=169.3	fisher_strand_p_value=1.14968e-08	frequency=2.125e-01	ks_quality_p_value=1	major_base=A	major_cov=16/47	major_frequency=7.875e-01	minor_base=C	minor_cov=17/0	new_cov=17/0	polymorphism_frequency=2.125e-01	polymorphism_score=11.7	prediction=polymorphism	ref_cov=16/47	total_cov=33/47
RA	318	.	NC_000913	2512431	0	G	T	bias_e_value=0.0787717	bias_p_value=1.69706e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=232.1	fisher_strand_p_value=7.72023e-10	frequency=2.569e-01	ks_quality_p_value=1	major_base=G	major_cov=55/26	major_frequency=7.431e-01	minor_base=T	minor_cov=1/27	new_cov=1/27	polymorphism_frequency=2.569e-01	polymorphism_score=12.2	prediction=polymorphism	ref_cov=55/26	total_cov=56/53
RA	319	.	NC_000913	2531659	0	C	T	consensus_score=345.6	frequency=1	major_base=T	major_cov=50/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/50
RA	320	.	NC_000913	2534506	0	C	T	consensus_score=278.7	frequency=1	major_base=T	major_cov=42/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/39
RA	321	.	NC_000913	2556984	0	G	A	consensus_score=206.6	frequency=1	major_base=A	major_cov=24/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=24/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=24/34
RA	322	.	NC_000913	2587112	0	C	T	consensus_score=251.9	frequency=1	major_base=T	major_cov=43/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/32
RA	323	.	NC_000913	2609473	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=389.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=73/47	major_frequency=9.917e-01	minor_base=C	minor_cov=1/0	new_cov=73/47	polymorphism_frequency=9.917e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/47
RA	324	.	NC_000913	2626119	0	G	T	bias_e_value=4447460	bias_p_value=0.958164	consensus_reject=FREQUENCY_CUTOFF	consensus_score=161.0	fisher_strand_p_value=0.785985	frequency=2.466e-01	ks_quality_p_value=0.922473	major_base=G	major_cov=31/24	major_frequency=7.534e-01	minor_base=T	minor_cov=9/9	new_cov=9/9	polymorphism_frequency=2.466e-01	polymorphism_score=31.5	prediction=polymorphism	ref_cov=31/24	total_cov=40/33
RA	325	.	NC_000913	2744217	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=320.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=47/47	major_frequency=9.895e-01	minor_base=G	minor_cov=0/1	new_cov=47/47	polymorphism_frequency=9.895e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/48
RA	326	.	NC_000913	2767445	0	C	A	bias_e_value=7.09248e-05	bias_p_value=1.52801e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.9	fisher_strand_p_value=5.21835e-13	frequency=2.235e-01	ks_quality_p_value=1	major_base=C	major_cov=8/58	major_frequency=7.765e-01	minor_base=A	minor_cov=19/0	new_cov=19/0	polymorphism_frequency=2.235e-01	polymorphism_score=17.5	prediction=polymorphism	ref_cov=8/58	total_cov=27/58
RA	327	.	NC_000913	2774947	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=453.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=72/59	major_frequency=9.850e-01	minor_base=G	minor_cov=1/1	new_cov=72/59	polymorphism_frequency=9.850e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=74/60
RA	328	.	NC_000913	2818324	0	G	A	bias_e_value=3455210	bias_p_value=0.744392	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.5	fisher_strand_p_value=0.382035	frequency=2.857e-01	ks_quality_p_value=0.985816	major_base=G	major_cov=21/19	major_frequency=7.143e-01	minor_base=A	minor_cov=6/10	new_cov=6/10	polymorphism_frequency=2.857e-01	polymorphism_score=37.3	prediction=polymorphism	ref_cov=21/19	total_cov=27/29
RA	329	.	NC_000913	2818331	0	G	T	bias_e_value=2291470	bias_p_value=0.493675	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.8	fisher_strand_p_value=0.74805	frequency=2.000e-01	ks_quality_p_value=0.244551	major_base=G	major_cov=23/25	major_frequency=8.000e-01	minor_base=T	minor_cov=7/5	new_cov=7/5	polymorphism_frequency=2.000e-01	polymorphism_score=18.3	prediction=polymorphism	ref_cov=23/25	total_cov=30/30
RA	330	.	NC_000913	2856087	0	G	T	bias_e_value=0.0170582	bias_p_value=3.67504e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.6	fisher_strand_p_value=1.55839e-10	frequency=3.235e-01	ks_quality_p_value=1	major_base=G	major_cov=42/27	major_frequency=6.765e-01	minor_base=T	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=3.235e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=42/27	total_cov=42/60
RA	331	.	NC_000913	2867455	0	G	A	consensus_score=359.1	frequency=1	major_base=A	major_cov=68/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/35
RA	332	.	NC_000913	2880635	0	T	C	bias_e_value=3934750	bias_p_value=0.847705	consensus_score=316.3	fisher_strand_p_value=0.501636	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=50/41	major_frequency=9.785e-01	minor_base=A	minor_cov=2/0	new_cov=50/41	polymorphism_frequency=9.785e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/41
RA	333	.	NC_000913	2926772	0	C	A	bias_e_value=3821300	bias_p_value=0.823263	consensus_score=380.3	fisher_strand_p_value=0.46789	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=50/58	major_frequency=9.908e-01	minor_base=C	minor_cov=1/0	new_cov=50/58	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=51/58
RA	334	.	NC_000913	2942306	0	G	A	bias_e_value=4641430	bias_p_value=0.999953	consensus_score=401.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.990284	major_base=A	major_cov=64/50	major_frequency=9.913e-01	minor_base=.	minor_cov=1/0	new_cov=64/50	polymorphism_frequency=9.913e-01	polymorphism_score=-2.9	prediction=consensus	ref_cov=0/0	total_cov=65/50
RA	335	.	NC_000913	3025601	0	T	.	consensus_score=569.2	frequency=1	major_base=.	major_cov=71/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/46
RA	336	.	NC_000913	3032307	0	C	T	bias_e_value=0.0184817	bias_p_value=3.98172e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.5	fisher_strand_p_value=1.69446e-10	frequency=2.193e-01	ks_quality_p_value=1	major_base=C	major_cov=29/60	major_frequency=7.807e-01	minor_base=T	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.193e-01	polymorphism_score=23.7	prediction=polymorphism	ref_cov=29/60	total_cov=55/60
RA	337	.	NC_000913	3054886	0	G	T	bias_e_value=0.0200074	bias_p_value=4.3104e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.3	fisher_strand_p_value=1.84082e-10	frequency=3.133e-01	ks_quality_p_value=1	major_base=G	major_cov=17/40	major_frequency=6.867e-01	minor_base=T	minor_cov=26/0	new_cov=26/0	polymorphism_frequency=3.133e-01	polymorphism_score=17.2	prediction=polymorphism	ref_cov=17/40	total_cov=43/40
RA	338	.	NC_000913	3054894	0	G	T	bias_e_value=1357.32	bias_p_value=0.000292422	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.1	fisher_strand_p_value=2.52366e-05	frequency=2.800e-01	ks_quality_p_value=1	major_base=G	major_cov=17/37	major_frequency=7.200e-01	minor_base=T	minor_cov=18/3	new_cov=18/3	polymorphism_frequency=2.800e-01	polymorphism_score=12.1	prediction=polymorphism	ref_cov=17/37	total_cov=36/40
RA	339	.	NC_000913	3070858	0	T	G	consensus_score=326.2	frequency=1	major_base=G	major_cov=43/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/46
RA	340	.	NC_000913	3087508	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=298.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=33/55	major_frequency=9.888e-01	minor_base=G	minor_cov=0/1	new_cov=33/55	polymorphism_frequency=9.888e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/56
RA	341	.	NC_000913	3134479	0	C	T	consensus_score=348.1	frequency=1	major_base=T	major_cov=44/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/54
RA	342	.	NC_000913	3167148	0	G	A	bias_e_value=3830780	bias_p_value=0.825304	consensus_score=300.4	fisher_strand_p_value=0.470588	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=45/39	major_frequency=9.882e-01	minor_base=G	minor_cov=0/1	new_cov=45/39	polymorphism_frequency=9.882e-01	polymorphism_score=-5.9	prediction=consensus	ref_cov=0/1	total_cov=45/40
RA	343	.	NC_000913	3207549	0	G	.	bias_e_value=4624640	bias_p_value=0.996335	consensus_score=419.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.915618	major_base=.	major_cov=40/50	major_frequency=9.890e-01	minor_base=G	minor_cov=0/1	new_cov=40/50	polymorphism_frequency=9.890e-01	polymorphism_score=-2.4	prediction=consensus	ref_cov=0/1	total_cov=40/51
RA	344	.	NC_000913	3226224	0	G	T	bias_e_value=0.00247487	bias_p_value=5.33187e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=184.8	fisher_strand_p_value=2.08321e-11	frequency=3.717e-01	ks_quality_p_value=1	major_base=G	major_cov=44/27	major_frequency=6.283e-01	minor_base=T	minor_cov=1/41	new_cov=1/41	polymorphism_frequency=3.717e-01	polymorphism_score=11.9	prediction=polymorphism	ref_cov=44/27	total_cov=45/68
RA	345	.	NC_000913	3241106	0	A	G	bias_e_value=2464520	bias_p_value=0.530958	consensus_score=331.4	fisher_strand_p_value=0.205686	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=50/40	major_frequency=9.783e-01	minor_base=A	minor_cov=0/2	new_cov=50/40	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/2	total_cov=50/42
RA	346	.	NC_000913	3268247	0	G	T	bias_e_value=2.14723e-06	bias_p_value=4.626e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=331.1	fisher_strand_p_value=1.40628e-14	frequency=2.683e-01	ks_quality_p_value=1	major_base=G	major_cov=73/47	major_frequency=7.317e-01	minor_base=T	minor_cov=0/44	new_cov=0/44	polymorphism_frequency=2.683e-01	polymorphism_score=10.8	prediction=polymorphism	ref_cov=73/47	total_cov=73/91
RA	347	.	NC_000913	3279276	0	C	G	consensus_score=337.5	frequency=1	major_base=G	major_cov=40/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/49
RA	348	.	NC_000913	3288834	0	G	T	bias_e_value=0.108987	bias_p_value=2.34803e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.8	fisher_strand_p_value=1.08495e-09	frequency=2.755e-01	ks_quality_p_value=1	major_base=G	major_cov=45/26	major_frequency=7.245e-01	minor_base=T	minor_cov=0/27	new_cov=0/27	polymorphism_frequency=2.755e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=45/26	total_cov=45/53
RA	349	.	NC_000913	3296481	0	G	A	bias_e_value=3460040	bias_p_value=0.745433	consensus_score=331.8	fisher_strand_p_value=0.377778	frequency=1	ks_quality_p_value=0.99975	major_base=A	major_cov=33/56	major_frequency=9.889e-01	minor_base=C	minor_cov=1/0	new_cov=33/56	polymorphism_frequency=9.889e-01	polymorphism_score=-7.3	prediction=consensus	ref_cov=0/0	total_cov=34/56
RA	350	.	NC_000913	3302338	0	C	A	consensus_score=278.3	frequency=1	major_base=A	major_cov=47/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/35
RA	351	.	NC_000913	3329743	0	G	T	consensus_score=227.3	frequency=1	major_base=T	major_cov=29/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/35
RA	352	.	NC_000913	3388041	0	T	G	consensus_score=370.5	frequency=1	major_base=G	major_cov=50/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/46
RA	353	.	NC_000913	3411689	0	G	T	bias_e_value=3596360	bias_p_value=0.774802	consensus_score=395.3	fisher_strand_p_value=0.412281	frequency=1	ks_quality_p_value=0.992421	major_base=T	major_cov=67/46	major_frequency=9.912e-01	minor_base=G	minor_cov=0/1	new_cov=67/46	polymorphism_frequency=9.912e-01	polymorphism_score=-6.5	prediction=consensus	ref_cov=0/1	total_cov=68/47
RA	354	.	NC_000913	3433900	0	C	T	consensus_score=395.6	frequency=1	major_base=T	major_cov=54/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/56
RA	355	.	NC_000913	3465502	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=469.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=59/75	major_frequency=9.926e-01	minor_base=G	minor_cov=0/1	new_cov=59/75	polymorphism_frequency=9.926e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=59/76
RA	356	.	NC_000913	3474424	0	T	G	bias_e_value=3891460	bias_p_value=0.838377	consensus_score=307.2	fisher_strand_p_value=0.488372	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=44/41	major_frequency=9.884e-01	minor_base=T	minor_cov=0/1	new_cov=44/41	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=44/42
RA	357	.	NC_000913	3486502	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=258.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99963	major_base=T	major_cov=43/30	major_frequency=9.865e-01	minor_base=G	minor_cov=1/0	new_cov=43/30	polymorphism_frequency=9.865e-01	polymorphism_score=-5.3	prediction=consensus	ref_cov=0/0	total_cov=44/30
RA	358	.	NC_000913	3511466	0	C	T	consensus_score=360.7	frequency=1	major_base=T	major_cov=51/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/55
RA	359	.	NC_000913	3524913	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=276.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=29/50	major_frequency=9.875e-01	minor_base=G	minor_cov=0/1	new_cov=29/50	polymorphism_frequency=9.875e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/51
RA	360	.	NC_000913	3555047	0	G	T	consensus_score=285.4	frequency=1	major_base=T	major_cov=46/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/37
RA	361	.	NC_000913	3555048	0	T	G	consensus_score=304.4	frequency=1	major_base=G	major_cov=46/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/37
RA	362	.	NC_000913	3560455	1	.	G	bias_e_value=4639260	bias_p_value=0.999485	consensus_score=280.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.968064	major_base=G	major_cov=42/36	major_frequency=9.873e-01	minor_base=A	minor_cov=1/0	new_cov=42/36	polymorphism_frequency=9.873e-01	polymorphism_score=-4.3	prediction=consensus	ref_cov=0/0	total_cov=43/36
RA	363	.	NC_000913	3581222	0	A	G	consensus_score=361.3	frequency=1	major_base=G	major_cov=35/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/62
RA	364	.	NC_000913	3599487	0	C	T	bias_e_value=3895480	bias_p_value=0.839244	consensus_score=311.5	fisher_strand_p_value=0.489583	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=46/49	major_frequency=9.896e-01	minor_base=C	minor_cov=1/0	new_cov=46/49	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=47/49
RA	365	.	NC_000913	3602471	0	C	T	bias_e_value=3759230	bias_p_value=0.80989	consensus_score=223.7	fisher_strand_p_value=0.450704	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=39/31	major_frequency=9.859e-01	minor_base=G	minor_cov=0/1	new_cov=39/31	polymorphism_frequency=9.859e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/32
RA	366	.	NC_000913	3618809	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=334.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=48/50	major_frequency=9.899e-01	minor_base=G	minor_cov=0/1	new_cov=48/50	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/51
RA	367	.	NC_000913	3620844	0	T	C	bias_e_value=4147850	bias_p_value=0.893615	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-2.1	fisher_strand_p_value=0.575758	frequency=4.167e-01	ks_quality_p_value=1	major_base=T	major_cov=3/4	major_frequency=5.833e-01	minor_base=C	minor_cov=1/4	new_cov=1/4	polymorphism_frequency=4.167e-01	polymorphism_score=11.1	prediction=polymorphism	ref_cov=3/4	total_cov=4/8
RA	368	.	NC_000913	3620859	0	C	T	bias_e_value=4621520	bias_p_value=0.995663	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-0.4	fisher_strand_p_value=1	frequency=3.846e-01	ks_quality_p_value=0.908324	major_base=C	major_cov=3/5	major_frequency=6.154e-01	minor_base=T	minor_cov=1/4	new_cov=1/4	polymorphism_frequency=3.846e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=3/5	total_cov=4/9
RA	369	.	NC_000913	3623537	0	G	A	bias_e_value=1.69887	bias_p_value=3.66005e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.6	fisher_strand_p_value=1.95183e-08	frequency=2.331e-01	ks_quality_p_value=1	major_base=G	major_cov=52/50	major_frequency=7.669e-01	minor_base=A	minor_cov=0/31	new_cov=0/31	polymorphism_frequency=2.331e-01	polymorphism_score=17.0	prediction=polymorphism	ref_cov=52/50	total_cov=52/87
RA	370	.	NC_000913	3647428	0	C	T	bias_e_value=3872270	bias_p_value=0.834245	consensus_score=314.0	fisher_strand_p_value=0.483146	frequency=1	ks_quality_p_value=0.998979	major_base=T	major_cov=46/42	major_frequency=9.888e-01	minor_base=G	minor_cov=0/1	new_cov=46/42	polymorphism_frequency=9.888e-01	polymorphism_score=-7.1	prediction=consensus	ref_cov=0/0	total_cov=46/43
RA	371	.	NC_000913	3670329	0	C	T	consensus_score=298.9	frequency=1	major_base=T	major_cov=38/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/49
RA	372	.	NC_000913	3685480	0	C	T	consensus_score=468.2	frequency=1	major_base=T	major_cov=69/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=69/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/64
RA	373	.	NC_000913	3707947	0	C	A	consensus_score=457.2	frequency=1	major_base=A	major_cov=89/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=89/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=89/49
RA	374	.	NC_000913	3719429	0	G	A	consensus_score=374.1	frequency=1	major_base=A	major_cov=50/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/54
RA	375	.	NC_000913	3725176	0	T	G	bias_e_value=3884340	bias_p_value=0.836844	consensus_score=410.3	fisher_strand_p_value=0.486239	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=56/52	major_frequency=9.908e-01	minor_base=A	minor_cov=0/1	new_cov=56/52	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=56/54
RA	376	.	NC_000913	3729440	0	C	T	consensus_score=326.1	frequency=1	major_base=T	major_cov=53/40	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/40	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/40
RA	377	.	NC_000913	3729441	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=333.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/40	major_frequency=9.892e-01	minor_base=C	minor_cov=1/0	new_cov=52/40	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=53/40
RA	378	.	NC_000913	3730560	0	C	T	bias_e_value=3924110	bias_p_value=0.845412	consensus_score=289.0	fisher_strand_p_value=0.498328	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/48	major_frequency=9.783e-01	minor_base=G	minor_cov=0/2	new_cov=42/48	polymorphism_frequency=9.783e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/50
RA	379	.	NC_000913	3737783	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=395.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=54/60	major_frequency=9.913e-01	minor_base=G	minor_cov=0/1	new_cov=54/60	polymorphism_frequency=9.913e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/61
RA	380	.	NC_000913	3741871	0	G	T	bias_e_value=0.916709	bias_p_value=1.97496e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=145.3	fisher_strand_p_value=1.01787e-08	frequency=3.333e-01	ks_quality_p_value=1	major_base=G	major_cov=35/29	major_frequency=6.667e-01	minor_base=T	minor_cov=0/32	new_cov=0/32	polymorphism_frequency=3.333e-01	polymorphism_score=13.3	prediction=polymorphism	ref_cov=35/29	total_cov=35/61
RA	381	.	NC_000913	3768435	0	C	A	bias_e_value=8.01126e-09	bias_p_value=1.72595e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=390.5	fisher_strand_p_value=4.46588e-17	frequency=2.460e-01	ks_quality_p_value=1	major_base=C	major_cov=50/91	major_frequency=7.540e-01	minor_base=A	minor_cov=46/0	new_cov=46/0	polymorphism_frequency=2.460e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=50/91	total_cov=96/91
RA	382	.	NC_000913	3770539	0	C	T	bias_e_value=4640970	bias_p_value=0.999854	consensus_score=255.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.982954	major_base=T	major_cov=39/36	major_frequency=9.868e-01	minor_base=C	minor_cov=1/0	new_cov=39/36	polymorphism_frequency=9.868e-01	polymorphism_score=-4.1	prediction=consensus	ref_cov=1/0	total_cov=40/36
RA	383	.	NC_000913	3772207	0	C	T	bias_e_value=3820040	bias_p_value=0.822991	consensus_score=561.7	fisher_strand_p_value=0.467532	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=82/71	major_frequency=9.935e-01	minor_base=C	minor_cov=0/1	new_cov=82/71	polymorphism_frequency=9.935e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=82/72
RA	384	.	NC_000913	3773173	0	G	.	bias_e_value=4641180	bias_p_value=0.999898	consensus_score=453.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.985769	major_base=.	major_cov=64/30	major_frequency=9.895e-01	minor_base=T	minor_cov=1/0	new_cov=64/30	polymorphism_frequency=9.895e-01	polymorphism_score=-1.6	prediction=consensus	ref_cov=0/0	total_cov=65/30
RA	385	.	NC_000913	3773176	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=360.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=64/31	major_frequency=9.896e-01	minor_base=C	minor_cov=1/0	new_cov=64/31	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=65/31
RA	386	.	NC_000913	3815883	1	.	C	bias_e_value=4641650	bias_p_value=1	consensus_score=425.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99921	major_base=C	major_cov=56/54	major_frequency=9.565e-01	minor_base=.	minor_cov=3/2	new_cov=56/54	polymorphism_frequency=9.565e-01	polymorphism_score=8.9	prediction=consensus	ref_cov=3/2	total_cov=60/56
RA	387	.	NC_000913	3911533	0	C	A	bias_e_value=8.48261e-06	bias_p_value=1.8275e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.2	fisher_strand_p_value=5.80576e-14	frequency=4.264e-01	ks_quality_p_value=1	major_base=C	major_cov=32/42	major_frequency=5.736e-01	minor_base=A	minor_cov=55/0	new_cov=55/0	polymorphism_frequency=4.264e-01	polymorphism_score=32.9	prediction=polymorphism	ref_cov=32/42	total_cov=87/42
RA	388	.	NC_000913	3923539	0	C	A	bias_e_value=51.5702	bias_p_value=1.11103e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.0	fisher_strand_p_value=7.34619e-07	frequency=2.887e-01	ks_quality_p_value=1	major_base=C	major_cov=36/33	major_frequency=7.113e-01	minor_base=A	minor_cov=28/0	new_cov=28/0	polymorphism_frequency=2.887e-01	polymorphism_score=12.0	prediction=polymorphism	ref_cov=36/33	total_cov=64/33
RA	389	.	NC_000913	3926991	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=476.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=92/49	major_frequency=9.860e-01	minor_base=C	minor_cov=1/1	new_cov=92/49	polymorphism_frequency=9.860e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=93/50
RA	390	.	NC_000913	3966530	0	C	T	consensus_score=367.1	frequency=1	major_base=T	major_cov=55/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/49
RA	391	.	NC_000913	3966531	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=352.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=54/49	major_frequency=9.904e-01	minor_base=C	minor_cov=1/0	new_cov=54/49	polymorphism_frequency=9.904e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=55/49
RA	392	.	NC_000913	4037496	0	A	T	bias_e_value=1860270	bias_p_value=0.400778	consensus_reject=FREQUENCY_CUTOFF	consensus_score=237.3	fisher_strand_p_value=0.216594	frequency=3.556e-01	ks_quality_p_value=0.612823	major_base=A	major_cov=64/52	major_frequency=6.444e-01	minor_base=T	minor_cov=29/35	new_cov=29/35	polymorphism_frequency=3.556e-01	polymorphism_score=259.4	prediction=polymorphism	ref_cov=64/52	total_cov=94/88
RA	393	.	NC_000913	4081749	0	G	A	consensus_score=369.9	frequency=1	major_base=A	major_cov=44/63	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/63	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/63
RA	394	.	NC_000913	4095026	0	G	A	consensus_score=365.8	frequency=1	major_base=A	major_cov=48/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/51
RA	395	.	NC_000913	4096144	0	G	A	consensus_score=360.1	frequency=1	major_base=A	major_cov=54/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/47
RA	396	.	NC_000913	4133270	0	C	T	bias_e_value=1741380	bias_p_value=0.375165	consensus_score=415.0	fisher_strand_p_value=0.120346	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=63/64	major_frequency=9.695e-01	minor_base=G	minor_cov=0/4	new_cov=63/64	polymorphism_frequency=9.695e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/68
RA	397	.	NC_000913	4138436	0	C	T	bias_e_value=2751720	bias_p_value=0.592832	consensus_score=201.8	fisher_strand_p_value=0.247312	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=28/32	major_frequency=9.524e-01	minor_base=G	minor_cov=0/3	new_cov=28/32	polymorphism_frequency=9.524e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=28/35
RA	398	.	NC_000913	4145137	0	C	T	bias_e_value=4641610	bias_p_value=0.999992	consensus_score=301.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995923	major_base=T	major_cov=43/45	major_frequency=9.888e-01	minor_base=G	minor_cov=0/1	new_cov=43/45	polymorphism_frequency=9.888e-01	polymorphism_score=-7.3	prediction=consensus	ref_cov=0/1	total_cov=43/47
RA	399	.	NC_000913	4166554	0	C	T	consensus_score=19.5	frequency=1	major_base=T	major_cov=2/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=2/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=2/6
RA	400	.	NC_000913	4223638	0	T	C	consensus_score=391.4	frequency=1	major_base=C	major_cov=54/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/54
RA	401	.	NC_000913	4256705	0	C	T	consensus_score=453.7	frequency=1	major_base=T	major_cov=61/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=61/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/61
RA	402	.	NC_000913	4259570	0	G	A	bias_e_value=3783380	bias_p_value=0.815094	consensus_score=293.5	fisher_strand_p_value=0.457831	frequency=1	ks_quality_p_value=0.998825	major_base=A	major_cov=37/45	major_frequency=9.880e-01	minor_base=C	minor_cov=1/0	new_cov=37/45	polymorphism_frequency=9.880e-01	polymorphism_score=-6.7	prediction=consensus	ref_cov=0/0	total_cov=38/45
RA	403	.	NC_000913	4296380	1	.	C	bias_e_value=3592240	bias_p_value=0.773913	consensus_score=162.4	fisher_strand_p_value=0.408163	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=29/19	major_frequency=9.796e-01	minor_base=T	minor_cov=0/1	new_cov=29/19	polymorphism_frequency=9.796e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=30/20
RA	404	.	NC_000913	4296380	2	.	G	bias_e_value=4631940	bias_p_value=0.997908	consensus_score=164.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.936016	major_base=G	major_cov=29/20	major_frequency=9.800e-01	minor_base=.	minor_cov=1/0	new_cov=29/20	polymorphism_frequency=9.800e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=1/0	total_cov=30/20
RA	405	.	NC_000913	4307944	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=392.0	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=60/45	major_frequency=9.906e-01	minor_base=C	minor_cov=1/0	new_cov=60/45	polymorphism_frequency=9.906e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=61/45
RA	406	.	NC_000913	4322288	0	A	G	bias_e_value=1505500	bias_p_value=0.324345	consensus_score=221.8	fisher_strand_p_value=0.0974462	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=34/27	major_frequency=9.531e-01	minor_base=T	minor_cov=0/3	new_cov=34/27	polymorphism_frequency=9.531e-01	polymorphism_score=-5.6	prediction=consensus	ref_cov=0/0	total_cov=34/30
RA	407	.	NC_000913	4325000	0	C	T	consensus_score=294.9	frequency=1	major_base=T	major_cov=51/31	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/31	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/31
RA	408	.	NC_000913	4325644	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=302.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=37/47	major_frequency=9.882e-01	minor_base=G	minor_cov=0/1	new_cov=37/47	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/48
RA	409	.	NC_000913	4331890	0	C	T	consensus_score=333.9	frequency=1	major_base=T	major_cov=46/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/48
RA	410	.	NC_000913	4360965	0	C	A	bias_e_value=3.05573e-05	bias_p_value=6.58329e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=326.7	fisher_strand_p_value=2.18331e-13	frequency=2.340e-01	ks_quality_p_value=1	major_base=C	major_cov=30/78	major_frequency=7.660e-01	minor_base=A	minor_cov=32/1	new_cov=32/1	polymorphism_frequency=2.340e-01	polymorphism_score=14.0	prediction=polymorphism	ref_cov=30/78	total_cov=62/79
RA	411	.	NC_000913	4427822	0	C	A	bias_e_value=1.29058e-05	bias_p_value=2.78044e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.9	fisher_strand_p_value=8.95651e-14	frequency=3.426e-01	ks_quality_p_value=1	major_base=C	major_cov=22/49	major_frequency=6.574e-01	minor_base=A	minor_cov=37/0	new_cov=37/0	polymorphism_frequency=3.426e-01	polymorphism_score=10.9	prediction=polymorphism	ref_cov=22/49	total_cov=59/49
RA	412	.	NC_000913	4437890	0	C	T	bias_e_value=3966680	bias_p_value=0.854583	consensus_score=598.9	fisher_strand_p_value=0.511753	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=73/101	major_frequency=9.886e-01	minor_base=G	minor_cov=0/2	new_cov=73/101	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/103
RA	413	.	NC_000913	4473900	0	C	T	consensus_score=341.7	frequency=1	major_base=T	major_cov=51/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/53
RA	414	.	NC_000913	4475493	0	T	C	bias_e_value=3815380	bias_p_value=0.821989	consensus_score=544.2	fisher_strand_p_value=0.466216	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=68/79	major_frequency=9.932e-01	minor_base=A	minor_cov=1/0	new_cov=68/79	polymorphism_frequency=9.932e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=69/79
RA	415	.	NC_000913	4476605	0	G	A	consensus_score=498.4	frequency=1	major_base=A	major_cov=68/77	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/77	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/77
RA	416	.	NC_000913	4489016	0	C	T	consensus_score=366.6	frequency=1	major_base=T	major_cov=52/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/56
RA	417	.	NC_000913	4510238	0	T	G	bias_e_value=30587.6	bias_p_value=0.00658981	consensus_score=408.0	fisher_strand_p_value=0.000811945	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=68/43	major_frequency=9.328e-01	minor_base=T	minor_cov=0/8	new_cov=68/43	polymorphism_frequency=9.328e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/8	total_cov=69/51
RA	418	.	NC_000913	4544413	0	G	A	consensus_score=416.3	frequency=1	major_base=A	major_cov=65/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/52
RA	419	.	NC_000913	4549043	0	T	G	bias_e_value=3850220	bias_p_value=0.829494	consensus_score=308.8	fisher_strand_p_value=0.47619	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=44/39	major_frequency=9.881e-01	minor_base=T	minor_cov=0/1	new_cov=44/39	polymorphism_frequency=9.881e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=44/40
RA	420	.	NC_000913	4625303	0	G	A	consensus_score=231.1	frequency=1	major_base=A	major_cov=42/28	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/28	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/28
RA	421	.	NC_000913	4636925	0	G	C	consensus_score=255.3	frequency=1	major_base=C	major_cov=33/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/34
RA	422	.	NC_000913	4638240	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=319.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=48/47	major_frequency=9.896e-01	minor_base=C	minor_cov=1/0	new_cov=48/47	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/47
MC	423	.	NC_000913	257908	258683	768	0	left_inside_cov=3	left_outside_cov=122	right_inside_cov=1	right_outside_cov=120
MC	424	.	NC_000913	574837	579183	951	0	left_inside_cov=26	left_outside_cov=30	right_inside_cov=0	right_outside_cov=122
MC	425	.	NC_000913	731314	732187	155	197	left_inside_cov=27	left_outside_cov=29	right_inside_cov=27	right_outside_cov=28
MC	426	.	NC_000913	1196316	1211460	0	0	left_inside_cov=24	left_outside_cov=28	right_inside_cov=26	right_outside_cov=30
MC	427	.	NC_000913	1299499	1300697	1198	0	left_inside_cov=0	left_outside_cov=110	right_inside_cov=1	right_outside_cov=112
MC	428	.	NC_000913	1978503	1979336	767	0	left_inside_cov=3	left_outside_cov=105	right_inside_cov=0	right_outside_cov=105
MC	429	.	NC_000913	2170323	2177386	1104	0	left_inside_cov=26	left_outside_cov=28	right_inside_cov=0	right_outside_cov=74
MC	430	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=71	right_inside_cov=2	right_outside_cov=73
MC	431	.	NC_000913	3423822	3424448	411	209	left_inside_cov=27	left_outside_cov=29	right_inside_cov=27	right_outside_cov=28
JC	432	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=78	coverage_plus=63	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=291	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=295	max_left_minus=295	max_left_plus=295	max_min_left=149	max_min_left_minus=149	max_min_left_plus=140	max_min_right=147	max_min_right_minus=147	max_min_right_plus=147	max_pos_hash_score=584	max_right=294	max_right_minus=289	max_right_plus=294	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.55	new_junction_read_count=144	polymorphism_frequency=1.000e+00	pos_hash_score=85	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=291	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=141
JC	433	.	NC_000913	19796	1	NC_000913	168803	1	0	alignment_overlap=0	coverage_minus=75	coverage_plus=50	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__19796__1__NC_000913__168803__1__0____300__300__1__0	max_left=286	max_left_minus=286	max_left_plus=283	max_min_left=143	max_min_left_minus=140	max_min_left_plus=143	max_min_right=142	max_min_right_minus=142	max_min_right_plus=142	max_pos_hash_score=584	max_right=291	max_right_minus=291	max_right_plus=284	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.35	new_junction_read_count=125	polymorphism_frequency=1.000e+00	pos_hash_score=72	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=125
JC	434	.	NC_000913	19796	1	NC_000913	362212	-1	0	alignment_overlap=0	coverage_minus=57	coverage_plus=39	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__19796__1__NC_000913__362212__-1__0____300__300__1__0	max_left=294	max_left_minus=294	max_left_plus=293	max_min_left=149	max_min_left_minus=149	max_min_left_plus=143	max_min_right=147	max_min_right_minus=139	max_min_right_plus=147	max_pos_hash_score=584	max_right=298	max_right_minus=298	max_right_plus=295	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.05	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96
JC	435	.	NC_000913	156469	1	NC_000913	1979270	-1	0	alignment_overlap=0	coverage_minus=33	coverage_plus=44	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__156469__1__NC_000913__1979270__-1__0____300__300__0__1	max_left=298	max_left_minus=297	max_left_plus=298	max_min_left=148	max_min_left_minus=146	max_min_left_plus=148	max_min_right=147	max_min_right_minus=142	max_min_right_plus=147	max_pos_hash_score=584	max_right=296	max_right_minus=296	max_right_plus=286	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.83	new_junction_read_count=77	polymorphism_frequency=1.000e+00	pos_hash_score=57	prediction=consensus	read_count_offset=9	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=282	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=77
JC	436	.	NC_000913	156477	-1	NC_000913	257908	1	0	alignment_overlap=0	coverage_minus=55	coverage_plus=75	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__156477__-1__NC_000913__257908__1__0____300__300__0__1	max_left=295	max_left_minus=295	max_left_plus=293	max_min_left=138	max_min_left_minus=138	max_min_left_plus=137	max_min_right=146	max_min_right_minus=146	max_min_right_plus=139	max_pos_hash_score=584	max_right=298	max_right_minus=298	max_right_plus=289	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.42	new_junction_read_count=132	polymorphism_frequency=1.000e+00	pos_hash_score=66	prediction=consensus	read_count_offset=9	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=282	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=130
JC	437	.	NC_000913	168811	-1	NC_000913	258675	-1	0	alignment_overlap=0	coverage_minus=37	coverage_plus=45	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__168811__-1__NC_000913__258675__-1__0____300__300__0__1	max_left=296	max_left_minus=296	max_left_plus=264	max_min_left=149	max_min_left_minus=149	max_min_left_plus=131	max_min_right=142	max_min_right_minus=138	max_min_right_plus=142	max_pos_hash_score=584	max_right=287	max_right_minus=287	max_right_plus=278	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.95	new_junction_read_count=88	polymorphism_frequency=1.000e+00	pos_hash_score=55	prediction=consensus	read_count_offset=9	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=282	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=82
JC	438	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=46	coverage_plus=72	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=283	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=289	max_left_minus=289	max_left_plus=287	max_min_left=143	max_min_left_minus=105	max_min_left_plus=143	max_min_right=144	max_min_right_minus=122	max_min_right_plus=144	max_pos_hash_score=568	max_right=283	max_right_minus=283	max_right_plus=273	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.32	new_junction_read_count=119	polymorphism_frequency=9.879e-01	pos_hash_score=70	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.03	side_1_overlap=8	side_1_possible_overlap_registers=291	side_1_read_count=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=118
JC	439	.	NC_000913	258675	-1	NC_000913	362204	1	0	alignment_overlap=0	coverage_minus=71	coverage_plus=35	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__258675__-1__NC_000913__362204__1__0____300__300__1__0	max_left=291	max_left_minus=276	max_left_plus=291	max_min_left=147	max_min_left_minus=147	max_min_left_plus=146	max_min_right=148	max_min_right_minus=148	max_min_right_plus=139	max_pos_hash_score=584	max_right=297	max_right_minus=297	max_right_plus=292	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.14	new_junction_read_count=106	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=106
JC	440	.	NC_000913	275149	-1	NC_000913	579184	1	0	alignment_overlap=0	coverage_minus=75	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__275149__-1__NC_000913__579184__1__0____300__300__1__0	max_left=288	max_left_minus=288	max_left_plus=279	max_min_left=121	max_min_left_minus=114	max_min_left_plus=121	max_min_right=148	max_min_right_minus=148	max_min_right_plus=147	max_pos_hash_score=584	max_right=298	max_right_minus=298	max_right_plus=291	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.32	new_junction_read_count=122	polymorphism_frequency=1.000e+00	pos_hash_score=70	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=118
JC	441	.	NC_000913	696505	-1	NC_000913	696832	1	0	alignment_overlap=30	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=7.922e-02	junction_possible_overlap_registers=261	key=NC_000913__696505__-1__NC_000913__696802__1__30____300__300__0__0	max_left=197	max_left_minus=197	max_left_plus=168	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=134	max_min_right_minus=73	max_min_right_plus=134	max_pos_hash_score=524	max_right=134	max_right_minus=73	max_right_plus=134	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=7.922e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.79	side_1_overlap=30	side_1_possible_overlap_registers=291	side_1_read_count=73	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.89	side_2_overlap=0	side_2_possible_overlap_registers=261	side_2_read_count=74	side_2_redundant=0	total_non_overlap_reads=5
JC	442	.	NC_000913	780918	-1	NC_000913	781445	1	0	alignment_overlap=76	coverage_minus=4	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=1.554e-01	junction_possible_overlap_registers=215	key=NC_000913__780918__-1__NC_000913__781369__1__76____300__300__0__0	max_left=83	max_left_minus=83	max_left_plus=83	max_min_left=12	max_min_left_minus=0	max_min_left_plus=12	max_min_right=70	max_min_right_minus=70	max_min_right_plus=70	max_pos_hash_score=432	max_right=70	max_right_minus=70	max_right_plus=70	neg_log10_pos_hash_p_value=5.4	new_junction_coverage=0.12	new_junction_read_count=8	polymorphism_frequency=1.554e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=76	side_1_possible_overlap_registers=291	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.53	side_2_overlap=0	side_2_possible_overlap_registers=215	side_2_read_count=36	side_2_redundant=0	total_non_overlap_reads=7
JC	443	.	NC_000913	781369	1	NC_000913	2521006	-1	-2	alignment_overlap=-2	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=6.493e-02	junction_possible_overlap_registers=289	key=NC_000913__781369__1__NC_000913__2521006__-1__-2__GG__300__300__0__0	max_left=127	max_left_minus=127	max_left_plus=108	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=62	max_min_right_minus=45	max_min_right_plus=62	max_pos_hash_score=580	max_right=62	max_right_minus=45	max_right_plus=62	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=6.493e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=0	side_1_possible_overlap_registers=291	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.92	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=85	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=GG
JC	444	.	NC_000913	781369	1	NC_000913	2521127	-1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=7.717e-02	junction_possible_overlap_registers=290	key=NC_000913__781369__1__NC_000913__2521127__-1__-1__G__300__300__0__0	max_left=127	max_left_minus=127	max_left_plus=108	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=63	max_min_right_minus=46	max_min_right_plus=63	max_pos_hash_score=582	max_right=63	max_right_minus=46	max_right_plus=63	neg_log10_pos_hash_p_value=7.8	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=7.717e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=0	side_1_possible_overlap_registers=291	side_1_read_count=60	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.65	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=60	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=G
JC	445	.	NC_000913	781577	1	NC_000913	2521129	-1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=8.025e-02	junction_possible_overlap_registers=290	key=NC_000913__781577__1__NC_000913__2521129__-1__-1__G__300__300__0__0	max_left=270	max_left_minus=270	max_left_plus=270	max_min_left=129	max_min_left_minus=0	max_min_left_plus=129	max_min_right=27	max_min_right_minus=27	max_min_right_plus=27	max_pos_hash_score=582	max_right=166	max_right_minus=27	max_right_plus=166	neg_log10_pos_hash_p_value=7.2	new_junction_coverage=0.05	new_junction_read_count=5	polymorphism_frequency=8.025e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.61	side_1_overlap=0	side_1_possible_overlap_registers=291	side_1_read_count=57	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.63	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=5	unique_read_sequence=G
JC	446	.	NC_000913	1286906	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=3	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.451e-01	junction_possible_overlap_registers=271	key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=263	max_left_minus=263	max_left_plus=242	max_min_left=22	max_min_left_minus=0	max_min_left_plus=22	max_min_right=49	max_min_right_minus=17	max_min_right_plus=49	max_pos_hash_score=544	max_right=276	max_right_minus=17	max_right_plus=276	neg_log10_pos_hash_p_value=5.7	new_junction_coverage=0.10	new_junction_read_count=9	polymorphism_frequency=1.451e-01	pos_hash_score=8	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.63	side_1_overlap=20	side_1_possible_overlap_registers=291	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.60	side_2_overlap=0	side_2_possible_overlap_registers=271	side_2_read_count=52	side_2_redundant=0	total_non_overlap_reads=8
JC	447	.	NC_000913	1287084	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=3	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.474e-01	junction_possible_overlap_registers=271	key=NC_000913__1287084__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=271	max_left_minus=271	max_left_plus=122	max_min_left=122	max_min_left_minus=0	max_min_left_plus=122	max_min_right=121	max_min_right_minus=121	max_min_right_plus=0	max_pos_hash_score=544	max_right=276	max_right_minus=121	max_right_plus=276	neg_log10_pos_hash_p_value=6.9	new_junction_coverage=0.10	new_junction_read_count=9	polymorphism_frequency=1.474e-01	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.60	side_1_overlap=20	side_1_possible_overlap_registers=291	side_1_read_count=56	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.60	side_2_overlap=0	side_2_possible_overlap_registers=271	side_2_read_count=52	side_2_redundant=0	total_non_overlap_reads=7
JC	448	.	NC_000913	1293196	1	NC_000913	1428794	-1	0	alignment_overlap=0	coverage_minus=48	coverage_plus=62	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__1293196__1__NC_000913__1428794__-1__0____300__300__0__0	max_left=298	max_left_minus=292	max_left_plus=298	max_min_left=138	max_min_left_minus=124	max_min_left_plus=138	max_min_right=147	max_min_right_minus=147	max_min_right_plus=132	max_pos_hash_score=584	max_right=295	max_right_minus=295	max_right_plus=290	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.20	new_junction_read_count=111	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=287	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=110
JC	449	.	NC_000913	1293199	-1	NC_000913	1427599	1	0	alignment_overlap=2	coverage_minus=58	coverage_plus=56	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=289	key=NC_000913__1293199__-1__NC_000913__1427597__1__2____300__300__0__0	max_left=296	max_left_minus=288	max_left_plus=296	max_min_left=140	max_min_left_minus=117	max_min_left_plus=140	max_min_right=142	max_min_right_minus=142	max_min_right_plus=139	max_pos_hash_score=580	max_right=295	max_right_minus=295	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.27	new_junction_read_count=117	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=287	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=0	total_non_overlap_reads=114
JC	450	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=61	coverage_plus=47	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=287	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=289	max_left_minus=288	max_left_plus=289	max_min_left=146	max_min_left_minus=127	max_min_left_plus=146	max_min_right=139	max_min_right_minus=138	max_min_right_plus=139	max_pos_hash_score=576	max_right=291	max_right_minus=291	max_right_plus=287	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.20	new_junction_read_count=110	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=291	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=108
JC	451	.	NC_000913	1397241	-1	NC_000913	1978502	-1	-59	alignment_overlap=-59	coverage_minus=46	coverage_plus=41	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=232	key=NC_000913__1397241__-1__NC_000913__1978502__-1__-59__GCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATA__300__300__1__0	max_left=239	max_left_minus=209	max_left_plus=239	max_min_left=119	max_min_left_minus=119	max_min_left_plus=102	max_min_right=116	max_min_right_minus=116	max_min_right_plus=106	max_pos_hash_score=466	max_right=232	max_right_minus=232	max_right_plus=217	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.20	new_junction_read_count=89	polymorphism_frequency=9.738e-01	pos_hash_score=58	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.03	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=3	side_2_redundant=0	total_non_overlap_reads=87	unique_read_sequence=GCGTAGCGAAAAACTTTTTAACAGATTGAAATACACCCAAAACAAAAGTATGACTTATA
JC	452	.	NC_000913	1879829	1	NC_000913	2515616	-1	0	alignment_overlap=2	coverage_minus=28	coverage_plus=22	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=289	key=NC_000913__1879827__1__NC_000913__2515616__-1__2____300__300__0__1	max_left=292	max_left_minus=286	max_left_plus=292	max_min_left=146	max_min_left_minus=146	max_min_left_plus=125	max_min_right=143	max_min_right_minus=143	max_min_right_plus=136	max_pos_hash_score=580	max_right=289	max_right_minus=289	max_right_plus=266	neg_log10_pos_hash_p_value=1.2	new_junction_coverage=0.54	new_junction_read_count=50	polymorphism_frequency=9.245e-01	pos_hash_score=36	prediction=consensus	read_count_offset=6	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.04	side_1_overlap=0	side_1_possible_overlap_registers=283	side_1_read_count=4	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=50
JC	453	.	NC_000913	1879834	-1	NC_000913	2514274	1	0	alignment_overlap=3	coverage_minus=31	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=288	key=NC_000913__1879837__-1__NC_000913__2514274__1__3____300__300__0__1	max_left=292	max_left_minus=286	max_left_plus=292	max_min_left=147	max_min_left_minus=122	max_min_left_plus=147	max_min_right=145	max_min_right_minus=145	max_min_right_plus=137	max_pos_hash_score=578	max_right=291	max_right_minus=270	max_right_plus=291	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=0.81	new_junction_read_count=74	polymorphism_frequency=9.731e-01	pos_hash_score=53	prediction=consensus	read_count_offset=6	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.02	side_1_overlap=0	side_1_possible_overlap_registers=282	side_1_read_count=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=3	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=74
JC	454	.	NC_000913	1978503	1	NC_000913	2094553	1	0	alignment_overlap=0	coverage_minus=43	coverage_plus=26	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__1978503__1__NC_000913__2094553__1__0____300__300__1__0	max_left=293	max_left_minus=284	max_left_plus=293	max_min_left=139	max_min_left_minus=139	max_min_left_plus=109	max_min_right=149	max_min_right_minus=149	max_min_right_plus=143	max_pos_hash_score=584	max_right=288	max_right_minus=265	max_right_plus=288	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.75	new_junction_read_count=70	polymorphism_frequency=1.000e+00	pos_hash_score=44	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=69
JC	455	.	NC_000913	1979270	-1	NC_000913	2094561	-1	0	alignment_overlap=0	coverage_minus=29	coverage_plus=37	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__1979270__-1__NC_000913__2094561__-1__0____300__300__1__0	max_left=278	max_left_minus=278	max_left_plus=273	max_min_left=140	max_min_left_minus=124	max_min_left_plus=140	max_min_right=147	max_min_right_minus=147	max_min_right_plus=124	max_pos_hash_score=584	max_right=287	max_right_minus=285	max_right_plus=287	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.73	new_junction_read_count=68	polymorphism_frequency=1.000e+00	pos_hash_score=44	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=66
JC	456	.	NC_000913	1979337	1	NC_000913	2102943	-1	0	alignment_overlap=0	coverage_minus=36	coverage_plus=69	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__1979337__1__NC_000913__2102943__-1__0____300__300__0__1	max_left=296	max_left_minus=296	max_left_plus=296	max_min_left=149	max_min_left_minus=146	max_min_left_plus=149	max_min_right=132	max_min_right_minus=94	max_min_right_plus=132	max_pos_hash_score=584	max_right=289	max_right_minus=265	max_right_plus=289	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.14	new_junction_read_count=106	polymorphism_frequency=1.000e+00	pos_hash_score=65	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=291	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=105
JC	457	.	NC_000913	2170171	1	NC_000913	4440465	1	0	alignment_overlap=0	coverage_minus=43	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__2170171__1__NC_000913__4440465__1__0____300__300__1__0	max_left=294	max_left_minus=289	max_left_plus=294	max_min_left=142	max_min_left_minus=142	max_min_left_plus=138	max_min_right=141	max_min_right_minus=104	max_min_right_plus=141	max_pos_hash_score=584	max_right=297	max_right_minus=297	max_right_plus=245	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.07	new_junction_read_count=99	polymorphism_frequency=1.000e+00	pos_hash_score=60	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96
JC	458	.	NC_000913	2171428	-1	NC_000913	2177387	1	0	alignment_overlap=0	coverage_minus=26	coverage_plus=47	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__2171428__-1__NC_000913__2177387__1__0____300__300__1__0	max_left=296	max_left_minus=288	max_left_plus=296	max_min_left=137	max_min_left_minus=137	max_min_left_plus=133	max_min_right=124	max_min_right_minus=124	max_min_right_plus=122	max_pos_hash_score=584	max_right=295	max_right_minus=295	max_right_plus=275	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.80	new_junction_read_count=74	polymorphism_frequency=1.000e+00	pos_hash_score=46	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=73
JC	459	.	NC_000913	2171428	-1	NC_000913	4440467	-1	0	alignment_overlap=1	coverage_minus=33	coverage_plus=48	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__2171428__-1__NC_000913__4440468__-1__1____300__300__1__0	max_left=295	max_left_minus=295	max_left_plus=268	max_min_left=145	max_min_left_minus=143	max_min_left_plus=145	max_min_right=144	max_min_right_minus=126	max_min_right_plus=144	max_pos_hash_score=582	max_right=290	max_right_minus=290	max_right_plus=282	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.90	new_junction_read_count=83	polymorphism_frequency=1.000e+00	pos_hash_score=61	prediction=consensus	read_count_offset=3	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=81
JC	460	.	NC_000913	2357690	-1	NC_000913	2357874	1	0	alignment_overlap=25	coverage_minus=4	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=8.751e-02	junction_possible_overlap_registers=266	key=NC_000913__2357690__-1__NC_000913__2357849__1__25____300__300__0__0	max_left=174	max_left_minus=171	max_left_plus=174	max_min_left=140	max_min_left_minus=138	max_min_left_plus=140	max_min_right=104	max_min_right_minus=104	max_min_right_plus=99	max_pos_hash_score=534	max_right=205	max_right_minus=205	max_right_plus=146	neg_log10_pos_hash_p_value=6.4	new_junction_coverage=0.09	new_junction_read_count=8	polymorphism_frequency=8.751e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.02	side_1_overlap=25	side_1_possible_overlap_registers=291	side_1_read_count=95	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=266	side_2_read_count=80	side_2_redundant=0	total_non_overlap_reads=8
JC	461	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=34	coverage_plus=35	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=283	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0	max_left=290	max_left_minus=269	max_left_plus=290	max_min_left=145	max_min_left_minus=138	max_min_left_plus=145	max_min_right=140	max_min_right_minus=137	max_min_right_plus=140	max_pos_hash_score=568	max_right=286	max_right_minus=280	max_right_plus=286	neg_log10_pos_hash_p_value=0.5	new_junction_coverage=0.79	new_junction_read_count=71	polymorphism_frequency=1.000e+00	pos_hash_score=47	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=291	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=69
JC	462	.	NC_000913	2653419	-1	NC_000913	2653746	1	0	alignment_overlap=25	coverage_minus=3	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=8.032e-02	junction_possible_overlap_registers=266	key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0	max_left=217	max_left_minus=217	max_left_plus=217	max_min_left=39	max_min_left_minus=0	max_min_left_plus=39	max_min_right=85	max_min_right_minus=85	max_min_right_plus=85	max_pos_hash_score=534	max_right=125	max_right_minus=85	max_right_plus=125	neg_log10_pos_hash_p_value=6.0	new_junction_coverage=0.08	new_junction_read_count=7	polymorphism_frequency=8.032e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=25	side_1_possible_overlap_registers=291	side_1_read_count=78	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.05	side_2_overlap=0	side_2_possible_overlap_registers=266	side_2_read_count=89	side_2_redundant=0	total_non_overlap_reads=7
JC	463	.	NC_000913	3022128	-1	NC_000913	3022534	1	0	alignment_overlap=10	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=3.573e-02	junction_possible_overlap_registers=281	key=NC_000913__3022128__-1__NC_000913__3022524__1__10____300__300__0__0	max_left=137	max_left_minus=137	max_left_plus=97	max_min_left=109	max_min_left_minus=109	max_min_left_plus=97	max_min_right=23	max_min_right_minus=23	max_min_right_plus=0	max_pos_hash_score=564	max_right=192	max_right_minus=181	max_right_plus=192	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=3.573e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.97	side_1_overlap=10	side_1_possible_overlap_registers=291	side_1_read_count=90	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=0	side_2_possible_overlap_registers=281	side_2_read_count=75	side_2_redundant=0	total_non_overlap_reads=3
JC	464	.	NC_000913	3187426	-1	NC_000913	4124494	1	0	alignment_overlap=0	coverage_minus=59	coverage_plus=52	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__3187426__-1__NC_000913__4124494__1__0____300__300__1__0	max_left=288	max_left_minus=279	max_left_plus=288	max_min_left=149	max_min_left_minus=149	max_min_left_plus=145	max_min_right=148	max_min_right_minus=140	max_min_right_plus=148	max_pos_hash_score=584	max_right=297	max_right_minus=280	max_right_plus=297	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.24	new_junction_read_count=115	polymorphism_frequency=9.912e-01	pos_hash_score=74	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=286	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=111
JC	465	.	NC_000913	3583428	1	NC_000913	4542049	-1	0	alignment_overlap=1	coverage_minus=73	coverage_plus=56	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__3583428__1__NC_000913__4542050__-1__1____300__300__1__0	max_left=293	max_left_minus=277	max_left_plus=293	max_min_left=141	max_min_left_minus=141	max_min_left_plus=114	max_min_right=148	max_min_right_minus=148	max_min_right_plus=145	max_pos_hash_score=582	max_right=297	max_right_minus=297	max_right_plus=281	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.44	new_junction_read_count=133	polymorphism_frequency=1.000e+00	pos_hash_score=77	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=129
JC	466	.	NC_000913	3584195	-1	NC_000913	4542042	1	0	alignment_overlap=0	coverage_minus=73	coverage_plus=59	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__3584195__-1__NC_000913__4542042__1__0____300__300__1__0	max_left=293	max_left_minus=293	max_left_plus=287	max_min_left=149	max_min_left_minus=149	max_min_left_plus=148	max_min_right=144	max_min_right_minus=144	max_min_right_plus=136	max_pos_hash_score=584	max_right=297	max_right_minus=276	max_right_plus=297	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.49	new_junction_read_count=138	polymorphism_frequency=1.000e+00	pos_hash_score=80	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=283	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=132
JC	467	.	NC_000913	3652036	1	NC_000913	4044847	1	0	alignment_overlap=0	coverage_minus=79	coverage_plus=73	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__3652036__1__NC_000913__4044847__1__0____300__300__1__0	max_left=293	max_left_minus=283	max_left_plus=293	max_min_left=139	max_min_left_minus=139	max_min_left_plus=134	max_min_right=147	max_min_right_minus=147	max_min_right_plus=144	max_pos_hash_score=584	max_right=297	max_right_minus=297	max_right_plus=289	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.68	new_junction_read_count=156	polymorphism_frequency=1.000e+00	pos_hash_score=81	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=152
JC	468	.	NC_000913	3653230	-1	NC_000913	4044850	-1	0	alignment_overlap=0	coverage_minus=80	coverage_plus=40	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__3653230__-1__NC_000913__4044850__-1__0____300__300__1__0	max_left=295	max_left_minus=292	max_left_plus=295	max_min_left=146	max_min_left_minus=146	max_min_left_plus=133	max_min_right=149	max_min_right_minus=149	max_min_right_plus=132	max_pos_hash_score=584	max_right=297	max_right_minus=297	max_right_plus=296	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.30	new_junction_read_count=121	polymorphism_frequency=1.000e+00	pos_hash_score=73	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=287	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=120
JC	469	.	NC_000913	3994636	-1	NC_000913	3995196	1	0	alignment_overlap=9	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=4.773e-02	junction_possible_overlap_registers=282	key=NC_000913__3994636__-1__NC_000913__3995187__1__9____300__300__0__0	max_left=65	max_left_minus=65	max_left_plus=29	max_min_left=29	max_min_left_minus=29	max_min_left_plus=29	max_min_right=16	max_min_right_minus=16	max_min_right_plus=0	max_pos_hash_score=566	max_right=101	max_right_minus=101	max_right_plus=101	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.04	new_junction_read_count=4	polymorphism_frequency=4.773e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.19	side_1_overlap=9	side_1_possible_overlap_registers=291	side_1_read_count=110	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.59	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=53	side_2_redundant=0	total_non_overlap_reads=4
JC	470	.	NC_000913	4094350	-1	NC_000913	4094719	1	0	alignment_overlap=41	coverage_minus=1	coverage_plus=3	flanking_left=300	flanking_right=300	frequency=6.567e-02	junction_possible_overlap_registers=250	key=NC_000913__4094350__-1__NC_000913__4094678__1__41____300__300__0__0	max_left=203	max_left_minus=175	max_left_plus=203	max_min_left=90	max_min_left_minus=0	max_min_left_plus=90	max_min_right=82	max_min_right_minus=82	max_min_right_plus=56	max_pos_hash_score=502	max_right=166	max_right_minus=82	max_right_plus=166	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.567e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.63	side_1_overlap=41	side_1_possible_overlap_registers=291	side_1_read_count=58	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.80	side_2_overlap=0	side_2_possible_overlap_registers=250	side_2_read_count=64	side_2_redundant=0	total_non_overlap_reads=4
JC	471	.	NC_000913	4124498	-1	NC_000913	4498181	1	0	alignment_overlap=1	coverage_minus=56	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=290	key=NC_000913__4124499__-1__NC_000913__4498181__1__1____300__300__0__1	max_left=298	max_left_minus=298	max_left_plus=295	max_min_left=137	max_min_left_minus=135	max_min_left_plus=137	max_min_right=145	max_min_right_minus=145	max_min_right_plus=142	max_pos_hash_score=582	max_right=296	max_right_minus=295	max_right_plus=296	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.09	new_junction_read_count=101	polymorphism_frequency=1.000e+00	pos_hash_score=70	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=285	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=99
JC	472	.	NC_000913	4176887	-1	NC_000913	4177077	1	0	alignment_overlap=13	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.288e-02	junction_possible_overlap_registers=278	key=NC_000913__4176900__-1__NC_000913__4177077__1__13____300__300__1__0	max_left=257	max_left_minus=106	max_left_plus=257	max_min_left=106	max_min_left_minus=106	max_min_left_plus=52	max_min_right=28	max_min_right_minus=0	max_min_right_plus=28	max_pos_hash_score=558	max_right=267	max_right_minus=267	max_right_plus=175	neg_log10_pos_hash_p_value=7.0	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=6.288e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.84	side_2_overlap=13	side_2_possible_overlap_registers=291	side_2_read_count=78	side_2_redundant=0	total_non_overlap_reads=5
JC	473	.	NC_000913	4295870	-1	NC_000913	4296434	1	0	alignment_overlap=39	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.362e-02	junction_possible_overlap_registers=252	key=NC_000913__4295870__-1__NC_000913__4296395__1__39____300__300__0__0	max_left=190	max_left_minus=190	max_left_plus=190	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=68	max_min_right_minus=68	max_min_right_plus=68	max_pos_hash_score=506	max_right=68	max_right_minus=68	max_right_plus=68	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=6.362e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.74	side_1_overlap=39	side_1_possible_overlap_registers=291	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.72	side_2_overlap=0	side_2_possible_overlap_registers=252	side_2_read_count=58	side_2_redundant=0	total_non_overlap_reads=4
JC	474	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=12	coverage_plus=5	flanking_left=300	flanking_right=300	frequency=1.173e-01	junction_possible_overlap_registers=282	key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0	max_left=286	max_left_minus=286	max_left_plus=243	max_min_left=122	max_min_left_minus=85	max_min_left_plus=122	max_min_right=96	max_min_right_minus=96	max_min_right_plus=48	max_pos_hash_score=566	max_right=280	max_right_minus=280	max_right_plus=263	neg_log10_pos_hash_p_value=4.3	new_junction_coverage=0.19	new_junction_read_count=17	polymorphism_frequency=1.173e-01	pos_hash_score=13	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.43	side_1_overlap=9	side_1_possible_overlap_registers=291	side_1_read_count=133	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.41	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=17
JC	475	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=3.566e-02	junction_possible_overlap_registers=282	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0	max_left=237	max_left_minus=237	max_left_plus=237	max_min_left=91	max_min_left_minus=91	max_min_left_plus=0	max_min_right=140	max_min_right_minus=140	max_min_right_plus=67	max_pos_hash_score=566	max_right=200	max_right_minus=200	max_right_plus=67	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.06	new_junction_read_count=5	polymorphism_frequency=3.566e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.60	side_1_overlap=9	side_1_possible_overlap_registers=291	side_1_read_count=148	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.41	side_2_overlap=0	side_2_possible_overlap_registers=282	side_2_read_count=127	side_2_redundant=0	total_non_overlap_reads=5
JC	476	.	NC_000913	4606166	-1	NC_000913	4606403	1	0	alignment_overlap=89	coverage_minus=3	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=9.634e-02	junction_possible_overlap_registers=202	key=NC_000913__4606166__-1__NC_000913__4606314__1__89____300__300__0__0	max_left=134	max_left_minus=134	max_left_plus=117	max_min_left=90	max_min_left_minus=75	max_min_left_plus=90	max_min_right=95	max_min_right_minus=95	max_min_right_plus=95	max_pos_hash_score=406	max_right=151	max_right_minus=134	max_right_plus=151	neg_log10_pos_hash_p_value=4.7	new_junction_coverage=0.12	new_junction_read_count=8	polymorphism_frequency=9.634e-02	pos_hash_score=7	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.34	side_1_overlap=89	side_1_possible_overlap_registers=291	side_1_read_count=124	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.99	side_2_overlap=0	side_2_possible_overlap_registers=202	side_2_read_count=64	side_2_redundant=0	total_non_overlap_reads=7
UN	477	.	NC_000913	15650	16469
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UN	600	.	NC_000913	4038994	4038994
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UN	614	.	NC_000913	4209478	4209478
UN	615	.	NC_000913	4209481	4209481
UN	616	.	NC_000913	4209487	4209487
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UN	618	.	NC_000913	4498471	4498471
UN	619	.	NC_000913	4498476	4499228
UN	620	.	NC_000913	4507747	4508404
UN	621	.	NC_000913	4508406	4508408