mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 24 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 36.4% | 22.9 / 30.5 | 33 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 3,984,090 | 0 | T | C | 34.8% | 81.0 / 11.2 | 46 | F378S (TTC→TCC) | aslB | putative anaerobic sulfatase maturation enzyme AslB |
| * | NC_000913 | 2,745,089 | 0 | A | C | 34.7% | 138.7 / 18.3 | 77 | V84G (GTG→GGG) | trmD | tRNA m(1)G37 methyltransferase |
| * | NC_000913 | 3,788,025 | 0 | T | G | 32.9% | 129.5 / 12.8 | 81 | G396G (GGT→GGG) | envC | murein hydrolase activator EnvC |
| * | NC_000913 | 4,004,132 | 0 | G | A | 30.9% | 57.9 / 16.1 | 43 | A16V (GCT→GTT) | rarD | putative transporter RarD |
| * | NC_000913 | 2,296,764 | 0 | T | G | 29.8% | 230.7 / 16.3 | 117 | L87F (TTA→TTC) | ccmB | cytochrome c maturation protein B |
| * | NC_000913 | 811,721 | 0 | T | G | 29.5% | 188.5 / 10.0 | 105 | V67G (GTG→GGG) | bioC | malonyl‑acyl carrier protein methyltransferase |
| * | NC_000913 | 4,256,061 | 0 | C | T | 29.1% | 75.7 / 16.5 | 55 | E136K (GAA→AAA) | plsB | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| * | NC_000913 | 803,869 | 0 | G | T | 28.9% | 85.3 / 11.4 | 45 | V123L (GTG→TTG) | ybhJ | putative hydratase YbhJ |
| * | NC_000913 | 3,270,455 | 0 | G | T | 28.6% | 43.8 / 10.4 | 35 | noncoding (138/377 nt) | rnpB | RNase P catalytic RNA component |
| * | NC_000913 | 1,268,876 | 0 | A | T | 27.8% | 102.0 / 15.1 | 54 | I238F (ATT→TTT) | kdsA | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase |
| * | NC_000913 | 3,164,363 | 0 | A | C | 27.0% | 193.7 / 12.5 | 101 | G537G (GGT→GGG) | parC | DNA topoisomerase IV subunit A |
| * | NC_000913 | 3,731,713 | 0 | G | A | 26.9% | 90.1 / 11.6 | 53 | E195K (GAA→AAA) | xylF | xylose ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,947,850 | 0 | C | T | 26.4% | 116.6 / 16.7 | 53 | E40K (GAA→AAA) | hdfR | DNA‑binding transcriptional dual regulator HdfR |
| * | NC_000913 | 161,653 | 0 | T | G | 26.3% | 159.2 / 11.0 | 76 | T127P (ACC→CCC) | thpR | RNA 2',3'‑cyclic phosphodiesterase |
| * | NC_000913 | 3,731,666 | 0 | G | A | 24.5% | 113.6 / 11.9 | 53 | G179E (GGA→GAA) | xylF | xylose ABC transporter periplasmic binding protein |
| * | NC_000913 | 2,395,444 | 0 | A | C | 24.5% | 191.0 / 10.9 | 94 | G151G (GGT→GGG) | nuoJ | NADH:quinone oxidoreductase subunit J |
| * | NC_000913 | 3,585,015 | 0 | T | A | 23.9% | 109.1 / 11.1 | 46 | I86K (ATA→AAA) | yrhB | putative heat shock chaperone |
| * | NC_000913 | 3,585,011 | 0 | G | A | 23.8% | 91.0 / 10.1 | 43 | E85K (GAA→AAA) | yrhB | putative heat shock chaperone |
| * | NC_000913 | 4,223,644 | 0 | C | T | 21.4% | 170.7 / 17.1 | 70 | intergenic (‑16/‑184) | iclR/metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1523914 | 90 (1.310) | 3 (0.040) | 3/492 | 5.8 | 3.4% | coding (608/1062 nt) | yncE | PQQ‑like domain‑containing protein YncE |
| ? | NC_000913 | = 1745719 | 78 (1.140) | coding (409/1257 nt) | ydhQ | putative adhesin‑related protein YdhQ | |||||
| * | ? | NC_000913 | 1020187 = | 37 (0.540) | 3 (0.040) | 3/492 | 5.8 | 3.7% | intergenic (‑134/+223) | ompA/sulA | outer membrane protein A/cell division inhibitor SulA |
| ? | NC_000913 | = 1127330 | 118 (1.720) | coding (525/924 nt) | yceM | putative oxidoreductase YceM | |||||
| * | ? | NC_000913 | = 517322 | 68 (0.990) | 3 (0.040) | 3/490 | 5.8 | 3.9% | coding (740/780 nt) | fetB | putative iron ABC exporter membrane subunit FetB |
| ? | NC_000913 | = 3331233 | 81 (1.180) | coding (522/1173 nt) | obgE | GTPase ObgE | |||||
| * | ? | NC_000913 | 78784 = | 53 (0.770) | 3 (0.040) | 3/492 | 5.8 | 4.3% | coding (1164/1179 nt) | setA | sugar exporter SetA |
| ? | NC_000913 | 1185146 = | 82 (1.190) | coding (449/1137 nt) | potA | spermidine preferential ABC transporter ATP binding subunit | |||||