mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 24,533 | C→T | L715L (CTG→TTG) | ileS → | isoleucine‑‑tRNA ligase |
| JC JC | 57,276 | IS2 (+) +5 bp | intergenic (‑167/‑84) | lptD ← / → djlA | lipopolysaccharide assembly protein LptD/co‑chaperone protein DjlA |
| RA | 71,134 | G→A | G250S (GGT→AGT) | araC → | DNA‑binding transcriptional dual regulator AraC |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 300,886 | C→T | V17I (GTT→ATT) | paoC ← | aldehyde dehydrogenase: molybdenum cofactor‑binding subunit |
| RA | 557,635 | A→T | L36Q (CTG→CAG) | folD ← | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase |
| JC JC | 568,449 | IS2 (–) +5 bp | coding (135‑139/333 nt) | emrE → | multidrug/betaine/choline efflux transporter EmrE |
| RA | 631,633 | G→A | W580* (TGG→TGA) | cstA → | pyruvate transporter CstA |
| RA | 754,701 | C→T | G27G (GGG→GGA) | ybgU ← | protein YbgU |
| RA | 851,643 | C→T | A319T (GCA→ACA) | opgE ← | phosphoethanolamine transferase OpgE |
| RA | 853,928 | C→T | T94T (ACC→ACT) | ybiR → | putative transporter YbiR |
| RA | 859,090 | A→G | intergenic (‑29/+123) | ybiU ← / ← ybiV | DUF1479 domain‑containing protein YbiU/sugar phosphatase YbiV |
| RA | 859,320 | C→T | E237K (GAA→AAA) | ybiV ← | sugar phosphatase YbiV |
| RA | 867,652 | C→T | L45L (CTG→TTG) | gsiA → | glutathione ABC transporter ATP binding subunit GsiA |
| RA | 867,817 | C→T | H100Y (CAT→TAT) | gsiA → | glutathione ABC transporter ATP binding subunit GsiA |
| RA | 871,161 | C→T | F65F (TTC→TTT) | gsiC → | glutathione ABC transporter membrane subunit GsiC |
| RA | 877,465 | C→T | V191M (GTG→ATG) | rimO ← | ribosomal protein S12 methylthiotransferase RimO |
| RA | 883,584 | C→T | intergenic (‑196/‑89) | ybjG ← / → mdfA | undecaprenyl pyrophosphate phosphatase/multidrug efflux pump MdfA/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| RA | 920,652 | C→T | T102T (ACC→ACT) | macB → | ABC‑type tripartite efflux pump ATP binding/membrane subunit |
| RA | 920,740 | C→T | L132L (CTG→TTG) | macB → | ABC‑type tripartite efflux pump ATP binding/membrane subunit |
| RA | 934,280 | C→T | P353S (CCT→TCT) | ftsK → | cell division DNA translocase FtsK |
| RA | 940,468 | C→T | I347I (ATC→ATT) | serS → | serine‑‑tRNA ligase |
| RA | 948,271 | C→T | T348I (ACC→ATC) | ycaM → | putative transporter YcaM |
| RA | 987,152 | G→T | intergenic (‑170/+433) | ompF ← / ← asnS | outer membrane porin F/asparagine‑‑tRNA ligase |
| RA | 1,028,956 | G→A | F338F (TTC→TTT) | rlmI ← | 23S rRNA m(5)C1962 methyltransferase |
| RA | 1,101,384 | A→G | L101L (TTA→CTA) | csgG ← | curli secretion channel |
| JC JC | 1,105,376 | IS2 (–) +5 bp | intergenic (+83/‑34) | csgC → / → ymdA | curlin chaperone/uncharacterized protein YmdA |
| RA | 1,172,649 | C→T | R439H (CGT→CAT) | mfd ← | transcription‑repair coupling factor |
| RA | 1,175,992 | C→T | T189I (ACT→ATT) | lolC → | lipoprotein release complex ‑ inner membrane subunit |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,277 | C→T | N385N (AAC→AAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,280 | G→C | A386A (GCG→GCC) | icd → | isocitrate dehydrogenase |
| RA | 1,196,283 | A→G | K387K (AAA→AAG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,292 | C→T | T390T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,304 | G→A | E394E (GAG→GAA) | icd → | isocitrate dehydrogenase |
| RA | 1,196,316 | T→A | D398E (GAT→GAA) | icd → | isocitrate dehydrogenase |
| RA | 1,268,681 | G→A | G173S (GGC→AGC) | kdsA → | 3‑deoxy‑D‑manno‑octulosonate 8‑phosphate synthase |
| RA | 1,290,881 | C→T | L214F (CTT→TTT) | rssB → | regulator of RpoS |
| MC JC | 1,294,035 | Δ141 bp | [tdk] | [tdk] | |
| MC JC | 1,303,073 | Δ12 bp | coding (175‑186/921 nt) | oppB → | murein tripeptide ABC transporter/oligopeptide ABC transporter inner membrane subunit OppB |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,353,758 | T→A | D254V (GAT→GTT) | sapC ← | putrescine ABC exporter membrane protein SapC |
| RA | 1,448,396 | G→A | G293D (GGC→GAC) | feaB → | phenylacetaldehyde dehydrogenase |
| RA | 1,456,172 | T→C | V83A (GTT→GCT) | paaD → | phenylacetate degradation protein |
| RA | 1,471,127 | G→A | pseudogene (609/3495 nt) | ydbA → | putative outer membrane protein, N‑terminal fragment |
| RA | 1,479,404 | G→C | R89R (CGG→CGC) | ynbC → | hydrolase/methyltransferase domain‑containing protein YnbC |
| RA | 1,482,688 | G→A | A58V (GCT→GTT) | azoR ← | FMN dependent NADH:quinone oxidoreductase |
| RA | 1,488,894 | G→A | K221K (AAG→AAA) | aldA → | aldehyde dehydrogenase A |
| RA | 1,488,917 | G→A | G229D (GGC→GAC) | aldA → | aldehyde dehydrogenase A |
| RA | 1,493,967 | G→A | E500K (GAA→AAA) | trg → | methyl‑accepting chemotaxis protein Trg |
| RA | 1,494,388 | Δ1 bp | coding (684/924 nt) | ydcI ← | DNA‑binding transcriptional dual regulator YdcI |
| RA | 1,494,823 | G→A | D83D (GAC→GAT) | ydcI ← | DNA‑binding transcriptional dual regulator YdcI |
| RA | 1,496,015 | G→A | G243E (GGA→GAA) | ydcJ → | DUF1338 domain‑containing protein YdcJ |
| RA | 1,496,955 | G→A | D34N (GAT→AAT) | opgD → | glucans biosynthesis protein D |
| RA | 1,501,745 | G→A | A62T (GCC→ACC) | tehB → | tellurite methyltransferase |
| RA | 1,503,855 | G→A | E67K (GAA→AAA) | insQ → | putative RNA‑guided DNA endonuclease InsQ |
| RA | 1,514,035 | G→A | E69K (GAA→AAA) | ydcU → | putative ABC transporter membrane subunit YdcU |
| RA | 1,516,914 | G→A | G446E (GGG→GAG) | patD → | gamma‑aminobutyraldehyde dehydrogenase |
| RA | 1,517,508 | G→T | V40V (GTG→GTT) | ortT → | orphan toxin OrtT |
| RA | 1,521,013 | G→A | P685S (CCC→TCC) | yncD ← | putative TonB‑dependent outer membrane receptor |
| RA | 1,521,886 | T→C | M394V (ATG→GTG) | yncD ← | putative TonB‑dependent outer membrane receptor |
| RA | 1,523,460 | G→A | E52K (GAA→AAA) | yncE → | PQQ‑like domain‑containing protein YncE |
| RA | 1,530,398 | G→A | W159* (TGG→TGA) T36I (ACC→ATC) |
ydcD → yncO ← |
uncharacterized protein YdcD protein YncO |
| RA | 1,530,970 | G→A | intergenic (‑466/‑846) | yncO ← / → ydcC | protein YncO/H repeat‑associated putative transposase YdcC |
| RA | 1,531,947 | G→A | W44* (TGG→TGA) | ydcC → | H repeat‑associated putative transposase YdcC |
| RA | 1,542,541 | G→A | T17I (ACC→ATC) | narZ ← | nitrate reductase Z subunit alpha |
| RA | 1,554,211 | G→A | L487L (CTG→TTG) | maeA ← | malate dehydrogenase (oxaloacetate‑decarboxylating) |
| RA | 1,560,620 | C→T | A104T (GCT→ACT) | ddpB ← | putative D,D‑dipeptide ABC transporter membrane subunit DdpB |
| RA | 1,566,443 | G→A | A233V (GCC→GTC) | dosC ← | diguanylate cyclase DosC |
| RA | 1,566,986 | G→A | A52V (GCC→GTC) | dosC ← | diguanylate cyclase DosC |
| RA | 1,571,269 | G→A | V259V (GTC→GTT) | gadB ← | glutamate decarboxylase B |
| RA | 1,578,108 | G→A | T412I (ACA→ATA) | yddA ← | ABC transporter family protein YddA |
| RA | 1,582,088 | G→A | A146V (GCC→GTC) | ydeN ← | putative sulfatase YdeN |
| RA | 1,590,442 | G→A | intergenic (‑441/+412) | ydeT ← / ← hipA | fimbrial usher domain‑containing protein YdeT/serine/threonine‑protein kinase toxin HipA |
| RA | 1,597,414 | C→T | intergenic (‑4972/+1203) | hipB ← / ← lsrK | antitoxin/DNA‑binding transcriptional repressor HipB/autoinducer‑2 kinase |
| RA | 1,611,435 | C→T | K140K (AAG→AAA) | dgcF ← | putative diguanylate cyclase DgcF |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,653,891 | G→A | P9S (CCG→TCG) | rspB ← | putative zinc‑binding dehydrogenase RspB |
| RA | 1,667,887 | Δ1 bp | coding (678/1221 nt) | mlc ← | DNA‑binding transcriptional repressor Mlc |
| RA | 1,681,097 | A→G | Y41C (TAT→TGT) | folM → | dihydromonapterin reductase |
| RA | 1,725,356 | C→T | E93K (GAA→AAA) | ydhF ← | putative oxidoreductase YdhF |
| RA | 1,740,808 | C→T | L300L (CTG→TTG) | punC → | purine nucleoside transporter PunC |
| RA | 1,743,284 | C→T | intergenic (‑42/‑173) | ribC ← / → mdtK | riboflavin synthase/multidrug efflux pump MdtK |
| RA | 1,744,751 | Δ1 bp | coding (1295/1374 nt) | mdtK → | multidrug efflux pump MdtK |
| RA | 1,748,302 | C→T | P391L (CCT→CTT) | ydhS → | FAD/NAD(P) binding domain‑containing protein YdhS |
| RA | 1,787,811 | C→T | L123F (CTC→TTC) | ppsR → | phosphoenolpyruvate synthetase regulatory protein |
| JC JC | 1,792,772 | IS2 (–) +5 bp | intergenic (‑41/+33) | nlpC ← / ← btuD | NlpC/P60 family lipoprotein NlpC/vitamin B12 ABC transporter ATP binding subunit |
| RA | 1,793,615 | A→G | D165D (GAT→GAC) | btuE ← | thioredoxin/glutathione peroxidase BtuE |
| RA | 1,897,640 | C→T | P237S (CCA→TCA) | sdaA → | L‑serine deaminase I |
| RA | 1,913,130 | C→T | D563N (GAT→AAT) | prc ← | tail‑specific protease |
| RA | 1,978,243 | G→T | intergenic (‑46/+275) | flhD ← / ← insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB |
| RA | 2,003,264 | C→T | E115K (GAA→AAA) | fliC ← | flagellar filament structural protein |
| RA | 2,027,528 | C→T | A164T (GCG→ACG) | dgcQ ← | diguanylate cyclase DgcQ |
| RA | 2,032,423 | G→A | V219V (GTC→GTT) | yedJ ← | putative HD superfamily phosphohydrolase YedJ |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,242,121 | A→G | S283P (TCG→CCG) | yeiB ← | DUF418 domain‑containing protein YeiB |
| JC JC | 2,269,876 | IS5 (+) +4 bp | intergenic (+309/‑100) | lpxT → / → mepS | lipid A‑core phosphotransferase/peptidoglycan endopeptidase/peptidoglycan L,D‑carboxypeptidase |
| JC JC | 2,319,850 | IS2 (+) +5 bp | coding (23‑27/2850 nt) | rcsC ← | histidine kinase RcsC |
| RA | 2,334,979 | G→A | P556S (CCC→TCC) | yfaA ← | DUF2138 domain‑containing protein YfaA |
| RA | 2,397,444 | G→A | Q908* (CAA→TAA) | nuoG ← | NADH:quinone oxidoreductase subunit G |
| JC JC | 2,406,780 | IS1 (–) +8 bp | intergenic (‑139/‑774) | lrhA ← / → alaA | DNA‑binding transcriptional dual regulator LrhA/glutamate‑‑pyruvate aminotransferase AlaA |
| RA | 2,411,201 | C→T | G51D (GGC→GAC) | yfbS ← | putative transporter YfbS |
| RA | 2,503,238 | C→T | A416A (GCG→GCA) | fryA ← | putative PTS multiphosphoryl transfer protein FryA |
| RA | 2,508,109 | C→T | G45D (GGT→GAT) | fryB ← | putative PTS enzyme IIB component FryB |
| MC JC | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| JC JC | 2,666,074 | IS1 (+) +9 bp | coding (640‑648/1281 nt) | csiE → | stationary phase‑inducible protein CsiE |
| RA | 2,879,575 | G→A | R66R (CGC→CGT) | cas1 ← | multifunctional nuclease Cas1 |
| RA | 2,882,303 | G→A | A112V (GCC→GTC) | casB ← | type I‑E CRISPR system Cascade subunit CasB |
| RA | 2,893,879 | G→A | G408D (GGC→GAC) | ygcN → | putative oxidoreductase with FAD/NAD(P)‑binding domain |
| RA | 2,895,088 | G→A | A231V (GCT→GTT) | ygcQ ← | putative flavoprotein |
| RA | 2,897,361 | G→A | N170N (AAC→AAT) | ygcS ← | putative transporter YgcS |
| RA | 2,903,157 | G→A | G421E (GGG→GAG) | ygcE → | putative sugar kinase YgcE |
| RA | 2,904,227 | G→A | intergenic (+853/+520) | ygcE → / ← queE | putative sugar kinase YgcE/putative 7‑carboxy‑7‑deazaguanine synthase QueE |
| RA | 2,906,581 | T→C | *291Q (TAA→CAA) | ygcG → | TPM domain‑containing protein YgcG |
| RA | 2,912,327 | G→A | A442V (GCA→GTA) | relA ← | GDP/GTP pyrophosphokinase |
| RA | 2,914,286 | G→A | L239F (CTC→TTC) | rlmD ← | 23S rRNA m(5)U1939 methyltransferase |
| RA | 2,916,130 | G→A | K358K (AAG→AAA) | barA → | sensor histidine kinase BarA |
| RA | 2,924,151 | G→A | intergenic (‑38/+5) | yqcC ← / ← csrB | DUF446 domain‑containing protein YqcC/small regulatory RNA CsrB |
| RA | 2,934,637 | G→A | E135K (GAA→AAA) | fucP → | L‑fucose:H(+) symporter |
| RA | 2,934,884 | C→T | A217V (GCT→GTT) | fucP → | L‑fucose:H(+) symporter |
| RA | 2,936,128 | G→A | G182D (GGC→GAC) | fucI → | L‑fucose isomerase |
| RA | 2,971,741 | G→A | V49I (GTT→ATT) | tas → | putative NADP(H)‑dependent aldo‑keto reductase Tas |
| RA | 2,973,673 | G→A | L64F (CTT→TTT) | lplT ← | lysophospholipid transporter |
| RA | 3,053,309 | C→T | A70A (GCG→GCA) | ubiH ← | 2‑octaprenyl‑6‑methoxyphenol 4‑hydroxylase |
| RA | 3,077,992 | C→T | G290S (GGT→AGT) | cmtA ← | mannitol‑specific PTS enzyme IICB component CmtA |
| RA | 3,268,970 | A→G | T186A (ACA→GCA) | yhaC → | uncharacterized protein YhaC |
| RA | 3,372,976 | C→T | G201S (GGC→AGC) | nanA ← | N‑acetylneuraminate lyase |
| RA | 3,379,020 | C→T | E326E (GAG→GAA) | zapE ← | cell division protein ZapE |
| RA | 3,379,029 | C→T | E323E (GAG→GAA) | zapE ← | cell division protein ZapE |
| RA | 3,388,093 | C→T | Q32Q (CAG→CAA) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,390,801 | C→T | A410T (GCA→ACA) | tldD ← | metalloprotease subunit TldD |
| RA | 3,418,436 | G→A | G16D (GGC→GAC) | yhdV → | lipoprotein YhdV |
| RA | 3,449,312 | G→A | T191I (ACC→ATC) | rpsC ← | 30S ribosomal subunit protein S3 |
| RA | 3,457,256 | G→A | D294N (GAT→AAT) | gspD → | Type II secretion system protein GspD |
| RA | 3,459,202 | G→A | G288G (GGG→GGA) | gspE → | Type II secretion system protein GspE |
| RA | 3,459,451 | G→A | G371G (GGG→GGA) | gspE → | Type II secretion system protein GspE |
| RA | 3,473,834 | G→A | S83F (TCT→TTT) | rpsG ← | 30S ribosomal subunit protein S7 |
| RA | 3,486,205 | C→A | T29K (ACG→AAG) | crp → | DNA‑binding transcriptional dual regulator CRP |
| RA | 3,488,895 | G→A | intergenic (+2/+65) | yhfK → / ← argD | putative transporter YhfK/N‑acetylornithine aminotransferase/N‑succinyldiaminopimelate aminotransferase |
| RA | 3,489,454 | G→A | H243Y (CAC→TAC) | argD ← | N‑acetylornithine aminotransferase/N‑succinyldiaminopimelate aminotransferase |
| RA | 3,492,899 | G→A | G111D (GGC→GAC) | tsgA → | putative transporter TsgA |
| RA | 3,505,067 | G→A | L318L (CTC→CTT) | yhfS ← | putative aminotransferase YhfS |
| RA | 3,507,237 | G→A | P34S (CCG→TCG) | yhfT ← | uncharacterized protein YhfT |
| RA | 3,525,367 | G→A | V833M (GTG→ATG) | mrcA → | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,596,252 | C→T | S51N (AGC→AAC) | livH ← | branched chain amino acid/phenylalanine ABC transporter membrane subunit LivH |
| MC JC | 3,682,261 | Δ34 bp | coding (1154‑1187/1287 nt) | dctA ← | C4 dicarboxylate/orotate:H(+) symporter |
| JC JC | 3,737,137 | IS2 (+) +5 bp | coding (37‑41/825 nt) | bax ← | putative glycoside hydrolase Bax |
| RA | 3,848,662 | C→T | S492N (AGC→AAC) | uhpB ← | sensory histidine kinase UhpB |
| RA | 3,876,963 | G→A | intergenic (‑11/+104) | yidA ← / ← yidB | sugar phosphatase YidA/DUF937 domain‑containing protein YidB |
| RA | 3,900,305 | C→T | L91L (CTG→CTA) | yieL ← | putative hydrolase YieL |
| RA | 3,910,206 | G→A | P65S (CCG→TCG) | pstC ← | phosphate ABC transporter membrane subunit PstC |
| RA | 3,969,324 | C→T | D98D (GAC→GAT) | wzzE → | enterobacterial common antigen polysaccharide co‑polymerase |
| RA | 4,014,010 | G→A | A320T (GCA→ACA) | metE → | cobalamin‑independent homocysteine transmethylase |
| RA | 4,111,882 | G→A | I111I (ATC→ATT) | yiiQ ← | DUF1454 domain‑containing protein YiiQ |
| JC JC | 4,123,923 | IS2 (–) +5 bp | coding (530‑534/1026 nt) | cytR ← | DNA‑binding transcriptional repressor CytR |
| JC JC | 4,135,180 | IS2 (–) +5 bp | coding (1346‑1350/2181 nt) | katG → | catalase/hydroperoxidase HPI |
| RA | 4,146,389 | (T)6→7 | coding (132/879 nt) | pflC → | putative pyruvate formate‑lyase 2 activating enzyme PflC |
| RA | 4,160,157 | G→A | L212L (CTG→TTG) | sthA ← | soluble pyridine nucleotide transhydrogenase |
| RA | 4,163,310 | G→A | intergenic (‑40/‑329) | trmA ← / → btuB | tRNA m(5)U54 methyltransferase/cobalamin outer membrane transporter |
| RA | 4,212,954 | C→T | intergenic (+8/‑86) | rrlE → / → rrfE | 23S ribosomal RNA/5S ribosomal RNA |
| RA | 4,220,155 | C→T | H520H (CAC→CAT) | aceK → | isocitrate dehydrogenase kinase/phosphatase |
| RA | 4,222,312 | C→T | G59D (GGT→GAT) | arpA ← | regulator of acetyl CoA synthetase |
| RA | 4,234,996 | C→T | L413L (CTC→CTT) | pgi → | glucose‑6‑phosphate isomerase |
| RA | 4,235,064 | C→T | S436F (TCC→TTC) | pgi → | glucose‑6‑phosphate isomerase |
| RA | 4,235,852 | C→T | intergenic (+445/‑54) | pgi → / → yjbE | glucose‑6‑phosphate isomerase/uncharacterized protein YjbE |
| RA | 4,236,311 | C→T | S17L (TCA→TTA) | yjbF → | lipoprotein YjbF |
| RA | 4,239,622 | C→T | S663S (AGC→AGT) | yjbH → | putative lipoprotein YjbH |
| RA | 4,242,544 | C→T | noncoding (90/103 nt) | malH ← | small regulatory RNA MalH |
| RA | 4,242,917 | C→T | W200* (TGG→TGA) | malG ← | maltose ABC transporter membrane subunit MalG |
| RA | 4,247,839 | C→T | C352C (TGC→TGT) | malK → | maltose ABC transporter ATP binding subunit |
| RA | 4,257,828 | C→T | L29L (CTC→CTT) | dinF → | DNA damage‑inducible protein F |
| RA | 4,259,147 | C→T | intergenic (+26/‑90) | dinF → / → yjbJ | DNA damage‑inducible protein F/putative stress response protein YjbJ |
| RA | 4,267,910 | C→T | A266V (GCC→GTC) | tyrB → | tyrosine aminotransferase |
| RA | 4,276,985 | G→A | K505K (AAG→AAA) | pdeC → | c‑di‑GMP phosphodiesterase PdeC |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,298,832 | C→T | D179N (GAT→AAT) | fdhF ← | formate dehydrogenase H |
| RA | 4,321,427 | C→T | Q90Q (CAG→CAA) | phnG ← | carbon‑phosphorus lyase core complex subunit PhnG |
| RA | 4,345,084 | C→T | G159S (GGT→AGT) | yjdF ← | DUF2238 domain‑containing inner membrane protein YjdF |
| RA | 4,405,371 | C→T | L229L (CTG→TTG) | purA → | adenylosuccinate synthetase |
| RA | 4,442,457 | C→T | L26L (CTA→TTA) | tamA → | translocation and assembly module subunit TamA |
| RA | 4,447,069 | C→T | V986V (GTC→GTT) | tamB → | translocation and assembly module subunit TamB |
| RA | 4,457,008 | C→T | H408H (CAC→CAT) | mpl → | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| RA | 4,461,522 | G→A | T380I (ACT→ATT) | nrdD ← | anaerobic ribonucleoside‑triphosphate reductase |
| RA | 4,461,531 | G→A | S377L (TCG→TTG) | nrdD ← | anaerobic ribonucleoside‑triphosphate reductase |
| RA | 4,466,376 | C→T | A291T (GCG→ACG) | treR ← | DNA‑binding transcriptional repressor TreR |
| RA | 4,485,237 | C→T | V239I (GTC→ATC) | pepA ← | aminopeptidase A/I |
| RA | 4,488,590 | C→T | G492R (GGG→AGG) | yjgR ← | DUF853 domain‑containing protein YjgR |
| JC JC | 4,536,236 | IS5 (+) +4 bp | intergenic (‑2183/‑358) | topAI ← / → ythB | toxin of the TopAI‑YjhQ toxin‑antitoxin system, TopA inhibitor/protein YthB |
| RA | 4,542,683 | Δ1 bp | intergenic (+50/‑432) | fimE → / → fimA | regulator for fimA/type 1 fimbriae major subunit |
| RA | 4,566,336 | C→T | G304E (GGG→GAG) | yjiN ← | DUF445 domain‑containing protein YjiN |
| RA | 4,593,535 | C→T | Q396Q (CAG→CAA) | lgoT ← | galactonate:H(+) symporter |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196324 | 1211461 | 15138 | 39 [34] | [38] 39 | [icd]–mcrA | [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1978495 | 1979270 | 776 | 120 [0] | [0] 161 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 3423806–3424233 | 3424449–3424238 | 6–644 | 40 [38] | [38] 39 | [rrlD] | [rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 381260 = | NA (NA) | 73 (0.650) | 56/598 | 0.7 | NA | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382183 | NA (NA) | noncoding (924/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 382179 = | NA (NA) | 38 (0.340) | 29/594 | 2.9 | NA | noncoding (920/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 382590 | NA (NA) | noncoding (1331/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 137 (1.240) | 88/590 | 0.1 | 100% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 119 (1.070) | 69/598 | 0.3 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1978494 | 0 (0.000) | intergenic (‑297/+24) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB | |||||
| * | ? | NC_000913 | 1979271 = | 0 (0.000) | 161 (1.440) | 99/598 | 0.0 | 100% | intergenic (‑56/‑482) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102947 | NA (NA) | pseudogene (443/446 nt) | wbbL | interrupted rhamnosyltransferase WbbL | |||||