#=GENOME_DIFF	1.0
#=CREATED	16:44:45 03 Jun 2025
#=PROGRAM	breseq 0.39.0 
#=COMMAND	breseq -j 8 -o /ld1/breseq_work/20250516nextseq_run_rmdup/HI180_rmdup_R1R2_ -r /ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff /ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/HI180_rmdup_R1.fastq.gz /ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/HI180_rmdup_R2.fastq.gz
#=REFSEQ	/ld1/E.coli_MG1655_ref/MG1655/ncbi_dataset/data/GCF_000005845.2/genomic.gbff
#=READSEQ	/ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/HI180_rmdup_R1.fastq.gz
#=READSEQ	/ld1/breseq_work/20250516nextseq_run_QC/work/test_work/seqkit_rmdup_-s/INPUT_FQ/HI180_rmdup_R2.fastq.gz
#=CONVERTED-BASES	535823700
#=CONVERTED-READS	1786079
#=INPUT-BASES	535911300
#=INPUT-READS	1786371
#=MAPPED-BASES	514901820
#=MAPPED-READS	1719146
SNP	1	196	NC_000913	24533	T
MOB	2	653,654	NC_000913	57276	IS2	1	5
SNP	3	199	NC_000913	71134	A
DEL	4	644,655	NC_000913	257908	776
SNP	5	201	NC_000913	300886	T
SNP	6	204	NC_000913	557635	T
MOB	7	662,663	NC_000913	568449	IS2	-1	5
SNP	8	271	NC_000913	631633	A
SNP	9	272	NC_000913	754701	T
SNP	10	274	NC_000913	851643	T
SNP	11	275	NC_000913	853928	T
SNP	12	276	NC_000913	859090	G
SNP	13	277	NC_000913	859320	T
SNP	14	278	NC_000913	867652	T
SNP	15	279	NC_000913	867817	T
SNP	16	280	NC_000913	871161	T
SNP	17	281	NC_000913	877465	T
SNP	18	282	NC_000913	883584	T
SNP	19	283	NC_000913	920652	T
SNP	20	284	NC_000913	920740	T
SNP	21	285	NC_000913	934280	T
SNP	22	286	NC_000913	940468	T
SNP	23	287	NC_000913	948271	T
SNP	24	288	NC_000913	987152	T
SNP	25	289	NC_000913	1028956	A
SNP	26	290	NC_000913	1101384	G
MOB	27	659,669	NC_000913	1105376	IS2	-1	5
SNP	28	291	NC_000913	1172649	T
SNP	29	292	NC_000913	1175992	T
SNP	30	293	NC_000913	1196220	T
SNP	31	294	NC_000913	1196232	T
SNP	32	295	NC_000913	1196245	C
SNP	33	296	NC_000913	1196247	G
SNP	34	297	NC_000913	1196277	T
SNP	35	298	NC_000913	1196280	C
SNP	36	299	NC_000913	1196283	G
SNP	37	300	NC_000913	1196292	T
SNP	38	301	NC_000913	1196304	A
SNP	39	302	NC_000913	1196316	A
SNP	40	305	NC_000913	1268681	A
SNP	41	306	NC_000913	1290881	T
DEL	42	646,671	NC_000913	1294035	141
DEL	43	647,673	NC_000913	1303073	12
SNP	44	308	NC_000913	1337394	G
SNP	45	309	NC_000913	1353758	A
SNP	46	431	NC_000913	1448396	A
SNP	47	432	NC_000913	1456172	C
SNP	48	433	NC_000913	1471127	A
SNP	49	434	NC_000913	1479404	C
SNP	50	435	NC_000913	1482688	A
SNP	51	436	NC_000913	1488894	A
SNP	52	437	NC_000913	1488917	A
SNP	53	438	NC_000913	1493967	A
DEL	54	439	NC_000913	1494388	1
SNP	55	440	NC_000913	1494823	A
SNP	56	441	NC_000913	1496015	A
SNP	57	442	NC_000913	1496955	A
SNP	58	443	NC_000913	1501745	A
SNP	59	446	NC_000913	1503855	A
SNP	60	447	NC_000913	1514035	A
SNP	61	448	NC_000913	1516914	A
SNP	62	449	NC_000913	1517508	T
SNP	63	450	NC_000913	1521013	A
SNP	64	451	NC_000913	1521886	C
SNP	65	452	NC_000913	1523460	A
SNP	66	453	NC_000913	1530398	A
SNP	67	454	NC_000913	1530970	A
SNP	68	455	NC_000913	1531947	A
SNP	69	456	NC_000913	1542541	A
SNP	70	457	NC_000913	1554211	A
SNP	71	459	NC_000913	1560620	T
SNP	72	460	NC_000913	1566443	A
SNP	73	461	NC_000913	1566986	A
SNP	74	462	NC_000913	1571269	A
SNP	75	464	NC_000913	1578108	A
SNP	76	466	NC_000913	1582088	A
SNP	77	467	NC_000913	1590442	A
SNP	78	468	NC_000913	1597414	T
SNP	79	469	NC_000913	1611435	T
SNP	80	502	NC_000913	1652331	C
SNP	81	503	NC_000913	1653891	A
DEL	82	504	NC_000913	1667887	1
SNP	83	505	NC_000913	1681097	G
SNP	84	506	NC_000913	1725356	T
SNP	85	507	NC_000913	1740808	T
SNP	86	508	NC_000913	1743284	T
DEL	87	509	NC_000913	1744751	1
SNP	88	510	NC_000913	1748302	T
SNP	89	512	NC_000913	1787811	T
MOB	90	675,676	NC_000913	1792772	IS2	-1	5
SNP	91	513	NC_000913	1793615	G
SNP	92	514	NC_000913	1897640	T
SNP	93	516	NC_000913	1913130	T
SNP	94	518	NC_000913	1978243	T
SNP	95	519	NC_000913	2003264	T
SNP	96	521	NC_000913	2027528	T
SNP	97	522	NC_000913	2032423	A
DEL	98	524,525	NC_000913	2173363	2
SNP	99	527	NC_000913	2242121	G
MOB	100	681,682	NC_000913	2269876	IS5	1	4
MOB	101	680,685	NC_000913	2319850	IS2	1	5
SNP	102	529	NC_000913	2334979	A
SNP	103	532	NC_000913	2397444	A
MOB	104	677,678	NC_000913	2406780	IS1	-1	8
SNP	105	533	NC_000913	2411201	T
SNP	106	539	NC_000913	2503238	T
SNP	107	540	NC_000913	2508109	T
DEL	108	649,687	NC_000913	2558699	6790
MOB	109	656,657	NC_000913	2666074	IS1	1	9
SNP	110	543	NC_000913	2879575	A
SNP	111	544	NC_000913	2882303	A
SNP	112	545	NC_000913	2893879	A
SNP	113	546	NC_000913	2895088	A
SNP	114	548	NC_000913	2897361	A
SNP	115	549	NC_000913	2903157	A
SNP	116	550	NC_000913	2904227	A
SNP	117	551	NC_000913	2906581	C
SNP	118	552	NC_000913	2912327	A
SNP	119	554	NC_000913	2914286	A
SNP	120	555	NC_000913	2916130	A
SNP	121	556	NC_000913	2924151	A
SNP	122	557	NC_000913	2934637	A
SNP	123	558	NC_000913	2934884	T
SNP	124	559	NC_000913	2936128	A
SNP	125	560	NC_000913	2971741	A
SNP	126	561	NC_000913	2973673	A
SNP	127	563	NC_000913	3053309	T
SNP	128	569	NC_000913	3077992	T
SNP	129	571	NC_000913	3268970	G
SNP	130	572	NC_000913	3372976	T
SNP	131	573	NC_000913	3379020	T
SNP	132	574	NC_000913	3379029	T
SNP	133	575	NC_000913	3388093	T
SNP	134	576	NC_000913	3390801	T
SNP	135	577	NC_000913	3418436	A
SNP	136	578	NC_000913	3449312	A
SNP	137	579	NC_000913	3457256	A
SNP	138	580	NC_000913	3459202	A
SNP	139	581	NC_000913	3459451	A
SNP	140	582	NC_000913	3473834	A
SNP	141	583	NC_000913	3486205	A
SNP	142	584	NC_000913	3488895	A
SNP	143	585	NC_000913	3489454	A
SNP	144	586	NC_000913	3492899	A
SNP	145	587	NC_000913	3505067	A
SNP	146	588	NC_000913	3507237	A
SNP	147	589	NC_000913	3525367	A
INS	148	591	NC_000913	3560455	G
SNP	149	592	NC_000913	3596252	T
DEL	150	651,693	NC_000913	3682261	34
MOB	151	690,694	NC_000913	3737137	IS2	1	5
SNP	152	596	NC_000913	3848662	T
SNP	153	597	NC_000913	3876963	A
SNP	154	598	NC_000913	3900305	T
SNP	155	599	NC_000913	3910206	A
SNP	156	601	NC_000913	3969324	T
SNP	157	602	NC_000913	4014010	A
SNP	158	603	NC_000913	4111882	A
MOB	159	696,697	NC_000913	4123923	IS2	-1	5
MOB	160	698,699	NC_000913	4135180	IS2	-1	5
INS	161	605	NC_000913	4146389	T	repeat_length=1	repeat_new_copies=7	repeat_ref_copies=6	repeat_seq=T
SNP	162	606	NC_000913	4160157	A
SNP	163	607	NC_000913	4163310	A
SNP	164	608	NC_000913	4212954	T
SNP	165	610	NC_000913	4220155	T
SNP	166	611	NC_000913	4222312	T
SNP	167	612	NC_000913	4234996	T
SNP	168	613	NC_000913	4235064	T
SNP	169	614	NC_000913	4235852	T
SNP	170	615	NC_000913	4236311	T
SNP	171	616	NC_000913	4239622	T
SNP	172	617	NC_000913	4242544	T
SNP	173	618	NC_000913	4242917	T
SNP	174	619	NC_000913	4247839	T
SNP	175	620	NC_000913	4257828	T
SNP	176	621	NC_000913	4259147	T
SNP	177	622	NC_000913	4267910	T
SNP	178	623	NC_000913	4276985	A
INS	179	626,627	NC_000913	4296381	GC
SNP	180	628	NC_000913	4298832	T
SNP	181	629	NC_000913	4321427	T
SNP	182	630	NC_000913	4345084	T
SNP	183	632	NC_000913	4405371	T
SNP	184	633	NC_000913	4442457	T
SNP	185	634	NC_000913	4447069	T
SNP	186	635	NC_000913	4457008	T
SNP	187	636	NC_000913	4461522	A
SNP	188	637	NC_000913	4461531	A
SNP	189	638	NC_000913	4466376	T
SNP	190	639	NC_000913	4485237	T
SNP	191	640	NC_000913	4488590	T
MOB	192	683,684	NC_000913	4536236	IS5	1	4
DEL	193	641	NC_000913	4542683	1
SNP	194	642	NC_000913	4566336	T
SNP	195	643	NC_000913	4593535	T
RA	196	.	NC_000913	24533	0	C	T	bias_e_value=4631750	bias_p_value=0.997866	consensus_score=347.9	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.935391	major_base=T	major_cov=47/51	major_frequency=9.899e-01	minor_base=C	minor_cov=0/1	new_cov=47/51	polymorphism_frequency=9.899e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=0/1	total_cov=47/52
RA	197	.	NC_000913	58065	0	C	A	bias_e_value=0.587485	bias_p_value=1.26568e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.8	fisher_strand_p_value=6.36924e-09	frequency=2.650e-01	ks_quality_p_value=1	major_base=C	major_cov=34/52	major_frequency=7.350e-01	minor_base=A	minor_cov=30/1	new_cov=30/1	polymorphism_frequency=2.650e-01	polymorphism_score=15.9	prediction=polymorphism	ref_cov=34/52	total_cov=64/53
RA	198	.	NC_000913	58594	0	G	T	bias_e_value=9.74564e-08	bias_p_value=2.09961e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=372.2	fisher_strand_p_value=5.81928e-16	frequency=2.353e-01	ks_quality_p_value=1	major_base=G	major_cov=87/43	major_frequency=7.647e-01	minor_base=T	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=2.353e-01	polymorphism_score=13.8	prediction=polymorphism	ref_cov=87/43	total_cov=87/83
RA	199	.	NC_000913	71134	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=433.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=52/66	major_frequency=9.833e-01	minor_base=G	minor_cov=1/1	new_cov=52/66	polymorphism_frequency=9.833e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/1	total_cov=53/67
RA	200	.	NC_000913	85651	0	G	T	bias_e_value=1599.8	bias_p_value=0.000344661	consensus_reject=FREQUENCY_CUTOFF	consensus_score=197.7	fisher_strand_p_value=3.02144e-05	frequency=2.302e-01	ks_quality_p_value=1	major_base=G	major_cov=34/63	major_frequency=7.698e-01	minor_base=T	minor_cov=0/29	new_cov=0/29	polymorphism_frequency=2.302e-01	polymorphism_score=10.0	prediction=polymorphism	ref_cov=34/63	total_cov=34/92
RA	201	.	NC_000913	300886	0	C	T	consensus_score=302.1	frequency=1	major_base=T	major_cov=41/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/43
RA	202	.	NC_000913	449461	0	C	A	bias_e_value=5736.97	bias_p_value=0.00123597	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.0	fisher_strand_p_value=0.000123618	frequency=2.034e-01	ks_quality_p_value=1	major_base=C	major_cov=29/18	major_frequency=7.966e-01	minor_base=A	minor_cov=0/12	new_cov=0/12	polymorphism_frequency=2.034e-01	polymorphism_score=15.6	prediction=polymorphism	ref_cov=29/18	total_cov=29/30
RA	203	.	NC_000913	538075	0	A	G	bias_e_value=959.99	bias_p_value=0.000206821	consensus_reject=FREQUENCY_CUTOFF	consensus_score=155.0	fisher_strand_p_value=1.72845e-05	frequency=2.584e-01	ks_quality_p_value=1	major_base=A	major_cov=36/30	major_frequency=7.416e-01	minor_base=G	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.584e-01	polymorphism_score=15.7	prediction=polymorphism	ref_cov=36/30	total_cov=59/30
RA	204	.	NC_000913	557635	0	A	T	consensus_score=374.4	frequency=1	major_base=T	major_cov=59/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=59/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=59/41
RA	205	.	NC_000913	566332	0	T	G	bias_e_value=3754360	bias_p_value=0.80884	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.2	fisher_strand_p_value=0.451642	frequency=2.000e-01	ks_quality_p_value=0.995012	major_base=T	major_cov=42/38	major_frequency=8.000e-01	minor_base=G	minor_cov=13/7	new_cov=13/7	polymorphism_frequency=2.000e-01	polymorphism_score=57.9	prediction=polymorphism	ref_cov=42/38	total_cov=55/45
RA	206	.	NC_000913	566414	0	A	G	bias_e_value=4472220	bias_p_value=0.963497	consensus_reject=FREQUENCY_CUTOFF	consensus_score=216.9	fisher_strand_p_value=0.804089	frequency=2.000e-01	ks_quality_p_value=0.923116	major_base=A	major_cov=40/40	major_frequency=8.000e-01	minor_base=G	minor_cov=11/9	new_cov=11/9	polymorphism_frequency=2.000e-01	polymorphism_score=55.4	prediction=polymorphism	ref_cov=40/40	total_cov=51/49
RA	207	.	NC_000913	566435	0	G	A	bias_e_value=2375660	bias_p_value=0.511814	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.6	fisher_strand_p_value=0.261728	frequency=2.453e-01	ks_quality_p_value=0.740469	major_base=G	major_cov=38/42	major_frequency=7.547e-01	minor_base=A	minor_cov=16/10	new_cov=16/10	polymorphism_frequency=2.453e-01	polymorphism_score=72.0	prediction=polymorphism	ref_cov=38/42	total_cov=54/52
RA	208	.	NC_000913	566444	0	T	C	bias_e_value=1991420	bias_p_value=0.429032	consensus_reject=FREQUENCY_CUTOFF	consensus_score=193.1	fisher_strand_p_value=0.273672	frequency=2.545e-01	ks_quality_p_value=0.537491	major_base=T	major_cov=38/44	major_frequency=7.455e-01	minor_base=C	minor_cov=17/11	new_cov=17/11	polymorphism_frequency=2.545e-01	polymorphism_score=78.5	prediction=polymorphism	ref_cov=38/44	total_cov=55/55
RA	209	.	NC_000913	566451	0	T	C	bias_e_value=1206250	bias_p_value=0.259876	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.6	fisher_strand_p_value=0.0785229	frequency=3.115e-01	ks_quality_p_value=0.909381	major_base=T	major_cov=40/44	major_frequency=6.885e-01	minor_base=C	minor_cov=25/13	new_cov=25/13	polymorphism_frequency=3.115e-01	polymorphism_score=108.5	prediction=polymorphism	ref_cov=40/44	total_cov=65/57
RA	210	.	NC_000913	566463	0	T	C	bias_e_value=1026280	bias_p_value=0.221103	consensus_reject=FREQUENCY_CUTOFF	consensus_score=178.1	fisher_strand_p_value=0.073338	frequency=2.951e-01	ks_quality_p_value=0.781105	major_base=T	major_cov=41/45	major_frequency=7.049e-01	minor_base=C	minor_cov=24/12	new_cov=24/12	polymorphism_frequency=2.951e-01	polymorphism_score=106.2	prediction=polymorphism	ref_cov=41/45	total_cov=65/57
RA	211	.	NC_000913	566468	0	C	T	bias_e_value=1472540	bias_p_value=0.317244	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.1	fisher_strand_p_value=0.094417	frequency=3.256e-01	ks_quality_p_value=1	major_base=C	major_cov=42/45	major_frequency=6.744e-01	minor_base=T	minor_cov=27/15	new_cov=27/15	polymorphism_frequency=3.256e-01	polymorphism_score=115.9	prediction=polymorphism	ref_cov=42/45	total_cov=69/60
RA	212	.	NC_000913	566492	0	G	T	bias_e_value=2691360	bias_p_value=0.579828	consensus_reject=FREQUENCY_CUTOFF	consensus_score=133.5	fisher_strand_p_value=0.304493	frequency=3.873e-01	ks_quality_p_value=0.782046	major_base=G	major_cov=46/41	major_frequency=6.127e-01	minor_base=T	minor_cov=34/21	new_cov=34/21	polymorphism_frequency=3.873e-01	polymorphism_score=157.0	prediction=polymorphism	ref_cov=46/41	total_cov=80/62
RA	213	.	NC_000913	566493	0	G	A	bias_e_value=2920780	bias_p_value=0.629255	consensus_reject=FREQUENCY_CUTOFF	consensus_score=115.2	fisher_strand_p_value=0.304493	frequency=3.873e-01	ks_quality_p_value=0.901195	major_base=G	major_cov=46/41	major_frequency=6.127e-01	minor_base=A	minor_cov=34/21	new_cov=34/21	polymorphism_frequency=3.873e-01	polymorphism_score=169.4	prediction=polymorphism	ref_cov=46/41	total_cov=80/62
RA	214	.	NC_000913	566498	0	C	T	bias_e_value=3033420	bias_p_value=0.653521	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.3	fisher_strand_p_value=0.304253	frequency=3.889e-01	ks_quality_p_value=0.965264	major_base=C	major_cov=45/43	major_frequency=6.111e-01	minor_base=T	minor_cov=34/22	new_cov=34/22	polymorphism_frequency=3.889e-01	polymorphism_score=167.0	prediction=polymorphism	ref_cov=45/43	total_cov=80/65
RA	215	.	NC_000913	566510	0	G	C	bias_e_value=3107420	bias_p_value=0.669465	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.0	fisher_strand_p_value=0.306937	frequency=3.916e-01	ks_quality_p_value=1	major_base=G	major_cov=45/42	major_frequency=6.084e-01	minor_base=C	minor_cov=34/22	new_cov=34/22	polymorphism_frequency=3.916e-01	polymorphism_score=191.5	prediction=polymorphism	ref_cov=45/42	total_cov=80/65
RA	216	.	NC_000913	566513	0	C	T	bias_e_value=3114000	bias_p_value=0.670881	consensus_reject=FREQUENCY_CUTOFF	consensus_score=131.5	fisher_strand_p_value=0.308138	frequency=3.862e-01	ks_quality_p_value=1	major_base=C	major_cov=46/43	major_frequency=6.138e-01	minor_base=T	minor_cov=34/22	new_cov=34/22	polymorphism_frequency=3.862e-01	polymorphism_score=165.6	prediction=polymorphism	ref_cov=46/43	total_cov=80/65
RA	217	.	NC_000913	566519	0	T	C	bias_e_value=2661510	bias_p_value=0.573397	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.5	fisher_strand_p_value=0.302044	frequency=3.916e-01	ks_quality_p_value=0.773645	major_base=T	major_cov=44/43	major_frequency=6.084e-01	minor_base=C	minor_cov=34/22	new_cov=34/22	polymorphism_frequency=3.916e-01	polymorphism_score=168.2	prediction=polymorphism	ref_cov=44/43	total_cov=78/65
RA	218	.	NC_000913	566522	0	C	A	bias_e_value=2905170	bias_p_value=0.625892	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.5	fisher_strand_p_value=0.304253	frequency=3.889e-01	ks_quality_p_value=0.893388	major_base=C	major_cov=45/43	major_frequency=6.111e-01	minor_base=A	minor_cov=34/22	new_cov=34/22	polymorphism_frequency=3.889e-01	polymorphism_score=163.9	prediction=polymorphism	ref_cov=45/43	total_cov=79/65
RA	219	.	NC_000913	566528	0	A	G	bias_e_value=2030590	bias_p_value=0.437472	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.6	fisher_strand_p_value=0.174493	frequency=3.793e-01	ks_quality_p_value=0.868432	major_base=A	major_cov=45/45	major_frequency=6.207e-01	minor_base=G	minor_cov=34/21	new_cov=34/21	polymorphism_frequency=3.793e-01	polymorphism_score=171.2	prediction=polymorphism	ref_cov=45/45	total_cov=80/66
RA	220	.	NC_000913	566530	1	.	T	bias_e_value=2504350	bias_p_value=0.539538	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.3	fisher_strand_p_value=0.304253	frequency=3.889e-01	ks_quality_p_value=0.694016	major_base=.	major_cov=45/43	major_frequency=6.111e-01	minor_base=T	minor_cov=34/22	new_cov=34/22	polymorphism_frequency=3.889e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=45/43	total_cov=79/65
RA	221	.	NC_000913	566532	0	A	T	bias_e_value=2375890	bias_p_value=0.511862	consensus_reject=FREQUENCY_CUTOFF	consensus_score=141.7	fisher_strand_p_value=0.231358	frequency=3.944e-01	ks_quality_p_value=0.837796	major_base=A	major_cov=43/43	major_frequency=6.056e-01	minor_base=T	minor_cov=34/22	new_cov=34/22	polymorphism_frequency=3.944e-01	polymorphism_score=234.4	prediction=polymorphism	ref_cov=43/43	total_cov=77/65
RA	222	.	NC_000913	566535	0	T	.	bias_e_value=2827310	bias_p_value=0.609116	consensus_reject=FREQUENCY_CUTOFF	consensus_score=299.2	fisher_strand_p_value=0.304493	frequency=3.873e-01	ks_quality_p_value=0.851145	major_base=T	major_cov=46/41	major_frequency=6.127e-01	minor_base=.	minor_cov=34/21	new_cov=34/21	polymorphism_frequency=3.873e-01	polymorphism_score=254.6	prediction=polymorphism	ref_cov=46/41	total_cov=80/62
RA	223	.	NC_000913	566536	0	G	A	bias_e_value=3006000	bias_p_value=0.647615	consensus_reject=FREQUENCY_CUTOFF	consensus_score=127.8	fisher_strand_p_value=0.300538	frequency=3.819e-01	ks_quality_p_value=0.961263	major_base=G	major_cov=46/43	major_frequency=6.181e-01	minor_base=A	minor_cov=34/21	new_cov=34/21	polymorphism_frequency=3.819e-01	polymorphism_score=163.4	prediction=polymorphism	ref_cov=46/43	total_cov=80/64
RA	224	.	NC_000913	566543	0	A	T	bias_e_value=3811530	bias_p_value=0.821158	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.2	fisher_strand_p_value=0.490878	frequency=3.916e-01	ks_quality_p_value=0.947546	major_base=A	major_cov=47/40	major_frequency=6.084e-01	minor_base=T	minor_cov=34/22	new_cov=34/22	polymorphism_frequency=3.916e-01	polymorphism_score=235.0	prediction=polymorphism	ref_cov=47/40	total_cov=81/62
RA	225	.	NC_000913	566547	0	C	A	bias_e_value=4091790	bias_p_value=0.881538	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.2	fisher_strand_p_value=0.604228	frequency=4.000e-01	ks_quality_p_value=0.917856	major_base=C	major_cov=47/37	major_frequency=6.000e-01	minor_base=A	minor_cov=34/22	new_cov=34/22	polymorphism_frequency=4.000e-01	polymorphism_score=169.4	prediction=polymorphism	ref_cov=47/37	total_cov=81/59
RA	226	.	NC_000913	566565	0	A	G	bias_e_value=4416000	bias_p_value=0.951386	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.0	fisher_strand_p_value=0.730694	frequency=3.916e-01	ks_quality_p_value=0.964631	major_base=A	major_cov=50/37	major_frequency=6.084e-01	minor_base=G	minor_cov=34/22	new_cov=34/22	polymorphism_frequency=3.916e-01	polymorphism_score=177.1	prediction=polymorphism	ref_cov=50/37	total_cov=84/59
RA	227	.	NC_000913	566570	0	A	C	bias_e_value=4237670	bias_p_value=0.912965	consensus_reject=FREQUENCY_CUTOFF	consensus_score=113.3	fisher_strand_p_value=0.612937	frequency=3.800e-01	ks_quality_p_value=1	major_base=A	major_cov=53/40	major_frequency=6.200e-01	minor_base=C	minor_cov=35/22	new_cov=35/22	polymorphism_frequency=3.800e-01	polymorphism_score=175.7	prediction=polymorphism	ref_cov=53/40	total_cov=88/62
RA	228	.	NC_000913	566597	0	T	C	bias_e_value=4590650	bias_p_value=0.989011	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.6	fisher_strand_p_value=0.862785	frequency=3.836e-01	ks_quality_p_value=0.991513	major_base=T	major_cov=52/38	major_frequency=6.164e-01	minor_base=C	minor_cov=34/22	new_cov=34/22	polymorphism_frequency=3.836e-01	polymorphism_score=168.3	prediction=polymorphism	ref_cov=52/38	total_cov=86/60
RA	229	.	NC_000913	566651	0	T	C	bias_e_value=3940010	bias_p_value=0.848838	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.7	fisher_strand_p_value=0.503283	frequency=3.503e-01	ks_quality_p_value=1	major_base=T	major_cov=55/47	major_frequency=6.497e-01	minor_base=C	minor_cov=33/22	new_cov=33/22	polymorphism_frequency=3.503e-01	polymorphism_score=162.0	prediction=polymorphism	ref_cov=55/47	total_cov=88/70
RA	230	.	NC_000913	566728	0	G	T	bias_e_value=4347090	bias_p_value=0.936539	consensus_reject=FREQUENCY_CUTOFF	consensus_score=275.7	fisher_strand_p_value=0.668727	frequency=2.258e-01	ks_quality_p_value=0.995307	major_base=G	major_cov=53/43	major_frequency=7.742e-01	minor_base=T	minor_cov=17/11	new_cov=17/11	polymorphism_frequency=2.258e-01	polymorphism_score=71.6	prediction=polymorphism	ref_cov=53/43	total_cov=70/54
RA	231	.	NC_000913	578331	0	G	T	bias_e_value=2494550	bias_p_value=0.537427	consensus_reject=FREQUENCY_CUTOFF	consensus_score=298.5	fisher_strand_p_value=0.209802	frequency=2.848e-01	ks_quality_p_value=1	major_base=G	major_cov=42/71	major_frequency=7.152e-01	minor_base=T	minor_cov=22/23	new_cov=22/23	polymorphism_frequency=2.848e-01	polymorphism_score=118.4	prediction=polymorphism	ref_cov=42/71	total_cov=64/94
RA	232	.	NC_000913	578427	0	G	C	bias_e_value=3897310	bias_p_value=0.839638	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.0	fisher_strand_p_value=0.502246	frequency=4.138e-01	ks_quality_p_value=0.975887	major_base=G	major_cov=40/45	major_frequency=5.862e-01	minor_base=C	minor_cov=32/28	new_cov=32/28	polymorphism_frequency=4.138e-01	polymorphism_score=214.2	prediction=polymorphism	ref_cov=40/45	total_cov=72/73
RA	233	.	NC_000913	578571	0	C	T	bias_e_value=4612030	bias_p_value=0.993619	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.4	fisher_strand_p_value=0.889181	frequency=5.130e-01	ks_quality_p_value=1	major_base=T	major_cov=79/39	major_frequency=5.130e-01	minor_base=C	minor_cov=76/36	new_cov=79/39	polymorphism_frequency=5.130e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=76/36	total_cov=155/75
RA	234	.	NC_000913	578574	0	A	C	bias_e_value=4518200	bias_p_value=0.973403	consensus_reject=FREQUENCY_CUTOFF	consensus_score=60.1	fisher_strand_p_value=0.778409	frequency=5.086e-01	ks_quality_p_value=1	major_base=C	major_cov=79/39	major_frequency=5.086e-01	minor_base=A	minor_cov=79/35	new_cov=79/39	polymorphism_frequency=5.086e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=79/35	total_cov=158/75
RA	235	.	NC_000913	578605	0	T	G	bias_e_value=4154780	bias_p_value=0.895108	consensus_reject=FREQUENCY_CUTOFF	consensus_score=50.7	fisher_strand_p_value=0.578474	frequency=5.106e-01	ks_quality_p_value=1	major_base=G	major_cov=79/41	major_frequency=5.106e-01	minor_base=T	minor_cov=80/35	new_cov=79/41	polymorphism_frequency=5.106e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=80/35	total_cov=159/76
RA	236	.	NC_000913	578729	0	A	G	bias_e_value=4541730	bias_p_value=0.978473	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=0.8	fisher_strand_p_value=0.799815	frequency=4.981e-01	ks_quality_p_value=1	major_base=A	major_cov=85/48	major_frequency=5.019e-01	minor_base=G	minor_cov=82/50	new_cov=82/50	polymorphism_frequency=4.981e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=85/48	total_cov=169/99
RA	237	.	NC_000913	578809	0	T	C	bias_e_value=4417890	bias_p_value=0.951793	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.7	fisher_strand_p_value=0.70915	frequency=4.826e-01	ks_quality_p_value=0.995582	major_base=T	major_cov=66/68	major_frequency=5.174e-01	minor_base=C	minor_cov=58/67	new_cov=58/67	polymorphism_frequency=4.826e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=66/68	total_cov=124/135
RA	238	.	NC_000913	578811	0	T	G	bias_e_value=4423990	bias_p_value=0.953107	consensus_reject=FREQUENCY_CUTOFF	consensus_score=12.3	fisher_strand_p_value=0.709821	frequency=4.845e-01	ks_quality_p_value=1	major_base=T	major_cov=65/68	major_frequency=5.155e-01	minor_base=G	minor_cov=58/67	new_cov=58/67	polymorphism_frequency=4.845e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=65/68	total_cov=124/135
RA	239	.	NC_000913	578831	0	T	C	bias_e_value=2317540	bias_p_value=0.499291	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-6.3	fisher_strand_p_value=0.190802	frequency=4.947e-01	ks_quality_p_value=0.976199	major_base=T	major_cov=71/73	major_frequency=5.053e-01	minor_base=C	minor_cov=58/83	new_cov=58/83	polymorphism_frequency=4.947e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=71/73	total_cov=129/156
RA	240	.	NC_000913	579004	0	C	T	bias_e_value=3811640	bias_p_value=0.821183	consensus_reject=FREQUENCY_CUTOFF	consensus_score=48.1	fisher_strand_p_value=0.46614	frequency=4.801e-01	ks_quality_p_value=0.9979	major_base=C	major_cov=55/102	major_frequency=5.199e-01	minor_base=T	minor_cov=45/100	new_cov=45/100	polymorphism_frequency=4.801e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=55/102	total_cov=100/203
RA	241	.	NC_000913	579099	0	A	.	bias_e_value=4619610	bias_p_value=0.995252	consensus_reject=FREQUENCY_CUTOFF	consensus_score=506.4	fisher_strand_p_value=0.90415	frequency=4.910e-01	ks_quality_p_value=1	major_base=A	major_cov=64/78	major_frequency=5.090e-01	minor_base=.	minor_cov=60/77	new_cov=60/77	polymorphism_frequency=4.910e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=64/78	total_cov=124/155
RA	242	.	NC_000913	579127	0	T	C	bias_e_value=4617120	bias_p_value=0.994714	consensus_reject=FREQUENCY_CUTOFF	consensus_score=13.2	fisher_strand_p_value=0.898958	frequency=4.858e-01	ks_quality_p_value=1	major_base=T	major_cov=68/59	major_frequency=5.142e-01	minor_base=C	minor_cov=63/57	new_cov=63/57	polymorphism_frequency=4.858e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=68/59	total_cov=131/116
RA	243	.	NC_000913	579134	0	T	C	bias_e_value=4616630	bias_p_value=0.99461	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=4.6	fisher_strand_p_value=0.897987	frequency=4.959e-01	ks_quality_p_value=1	major_base=T	major_cov=66/57	major_frequency=5.041e-01	minor_base=C	minor_cov=63/58	new_cov=63/58	polymorphism_frequency=4.959e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=66/57	total_cov=129/115
RA	244	.	NC_000913	579146	0	A	G	bias_e_value=4580170	bias_p_value=0.986754	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=6.2	fisher_strand_p_value=0.900231	frequency=5.079e-01	ks_quality_p_value=0.934997	major_base=G	major_cov=70/59	major_frequency=5.079e-01	minor_base=A	minor_cov=69/56	new_cov=70/59	polymorphism_frequency=5.079e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=69/56	total_cov=139/115
RA	245	.	NC_000913	579271	0	G	A	bias_e_value=3529010	bias_p_value=0.760291	consensus_reject=FREQUENCY_CUTOFF	consensus_score=23.3	fisher_strand_p_value=0.54645	frequency=5.222e-01	ks_quality_p_value=0.719679	major_base=A	major_cov=94/59	major_frequency=5.222e-01	minor_base=G	minor_cov=91/49	new_cov=94/59	polymorphism_frequency=5.222e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=91/49	total_cov=186/109
RA	246	.	NC_000913	579285	0	T	C	bias_e_value=2659130	bias_p_value=0.572884	consensus_reject=FREQUENCY_CUTOFF	consensus_score=25.5	fisher_strand_p_value=0.719867	frequency=5.182e-01	ks_quality_p_value=0.324119	major_base=C	major_cov=100/57	major_frequency=5.182e-01	minor_base=T	minor_cov=96/50	new_cov=100/57	polymorphism_frequency=5.182e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=96/50	total_cov=197/107
RA	247	.	NC_000913	579385	0	A	G	bias_e_value=4071130	bias_p_value=0.877086	consensus_reject=FREQUENCY_CUTOFF	consensus_score=46.9	fisher_strand_p_value=0.57912	frequency=5.210e-01	ks_quality_p_value=0.944759	major_base=G	major_cov=100/74	major_frequency=5.210e-01	minor_base=A	minor_cov=97/63	new_cov=100/74	polymorphism_frequency=5.210e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=97/63	total_cov=197/138
RA	248	.	NC_000913	579457	0	A	G	bias_e_value=2459560	bias_p_value=0.529889	consensus_reject=FREQUENCY_CUTOFF	consensus_score=35.8	fisher_strand_p_value=0.233699	frequency=5.173e-01	ks_quality_p_value=0.877241	major_base=G	major_cov=94/85	major_frequency=5.173e-01	minor_base=A	minor_cov=99/68	new_cov=94/85	polymorphism_frequency=5.173e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=99/68	total_cov=193/153
RA	249	.	NC_000913	579502	0	A	G	bias_e_value=4043210	bias_p_value=0.871072	consensus_reject=FREQUENCY_CUTOFF	consensus_score=79.6	fisher_strand_p_value=0.542828	frequency=4.706e-01	ks_quality_p_value=0.989822	major_base=A	major_cov=112/95	major_frequency=5.294e-01	minor_base=G	minor_cov=93/91	new_cov=93/91	polymorphism_frequency=4.706e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=112/95	total_cov=205/186
RA	250	.	NC_000913	579540	0	T	C	bias_e_value=3364620	bias_p_value=0.724875	consensus_reject=FREQUENCY_CUTOFF	consensus_score=56.0	fisher_strand_p_value=0.357154	frequency=4.726e-01	ks_quality_p_value=1	major_base=T	major_cov=104/98	major_frequency=5.274e-01	minor_base=C	minor_cov=84/97	new_cov=84/97	polymorphism_frequency=4.726e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=104/98	total_cov=191/195
RA	251	.	NC_000913	579651	0	C	T	bias_e_value=4231490	bias_p_value=0.911634	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.6	fisher_strand_p_value=0.61023	frequency=4.585e-01	ks_quality_p_value=1	major_base=C	major_cov=97/112	major_frequency=5.415e-01	minor_base=T	minor_cov=87/90	new_cov=87/90	polymorphism_frequency=4.585e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=97/112	total_cov=184/202
RA	252	.	NC_000913	579671	0	T	C	bias_e_value=4624610	bias_p_value=0.996327	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.3	fisher_strand_p_value=0.91553	frequency=4.556e-01	ks_quality_p_value=1	major_base=T	major_cov=90/106	major_frequency=5.444e-01	minor_base=C	minor_cov=77/87	new_cov=77/87	polymorphism_frequency=4.556e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=90/106	total_cov=167/193
RA	253	.	NC_000913	579717	0	A	C	bias_e_value=4574370	bias_p_value=0.985505	consensus_reject=FREQUENCY_CUTOFF	consensus_score=108.0	fisher_strand_p_value=0.834638	frequency=4.421e-01	ks_quality_p_value=1	major_base=A	major_cov=89/123	major_frequency=5.579e-01	minor_base=C	minor_cov=73/95	new_cov=73/95	polymorphism_frequency=4.421e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=89/123	total_cov=162/218
RA	254	.	NC_000913	579811	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=32.8	fisher_strand_p_value=1	frequency=4.949e-01	ks_quality_p_value=1	major_base=C	major_cov=64/86	major_frequency=5.051e-01	minor_base=T	minor_cov=62/85	new_cov=62/85	polymorphism_frequency=4.949e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=64/86	total_cov=126/171
RA	255	.	NC_000913	580020	0	G	A	bias_e_value=904599	bias_p_value=0.194887	consensus_reject=FREQUENCY_CUTOFF	consensus_score=43.2	fisher_strand_p_value=0.112926	frequency=4.721e-01	ks_quality_p_value=0.428364	major_base=G	major_cov=78/64	major_frequency=5.279e-01	minor_base=A	minor_cov=57/70	new_cov=57/70	polymorphism_frequency=4.721e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=78/64	total_cov=135/134
RA	256	.	NC_000913	580115	0	C	T	bias_e_value=1956110	bias_p_value=0.421425	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.3	fisher_strand_p_value=0.896682	frequency=4.504e-01	ks_quality_p_value=0.15965	major_base=C	major_cov=74/59	major_frequency=5.496e-01	minor_base=T	minor_cov=62/47	new_cov=62/47	polymorphism_frequency=4.504e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=74/59	total_cov=136/106
RA	257	.	NC_000913	580119	0	A	G	bias_e_value=4640190	bias_p_value=0.999685	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.9	fisher_strand_p_value=1	frequency=4.367e-01	ks_quality_p_value=0.975	major_base=A	major_cov=79/59	major_frequency=5.633e-01	minor_base=G	minor_cov=62/45	new_cov=62/45	polymorphism_frequency=4.367e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=79/59	total_cov=141/104
RA	258	.	NC_000913	580120	0	C	T	bias_e_value=3908440	bias_p_value=0.842036	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.5	fisher_strand_p_value=0.895912	frequency=4.440e-01	ks_quality_p_value=0.550852	major_base=C	major_cov=79/55	major_frequency=5.560e-01	minor_base=T	minor_cov=62/45	new_cov=62/45	polymorphism_frequency=4.440e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=79/55	total_cov=144/100
RA	259	.	NC_000913	580302	0	C	T	bias_e_value=1015670	bias_p_value=0.218817	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.0	fisher_strand_p_value=0.0835684	frequency=4.111e-01	ks_quality_p_value=0.675939	major_base=C	major_cov=74/85	major_frequency=5.889e-01	minor_base=T	minor_cov=64/47	new_cov=64/47	polymorphism_frequency=4.111e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=74/85	total_cov=138/132
RA	260	.	NC_000913	580437	0	A	C	bias_e_value=3436050	bias_p_value=0.740264	consensus_reject=FREQUENCY_CUTOFF	consensus_score=316.8	fisher_strand_p_value=0.372412	frequency=2.955e-01	ks_quality_p_value=1	major_base=A	major_cov=65/90	major_frequency=7.045e-01	minor_base=C	minor_cov=32/33	new_cov=32/33	polymorphism_frequency=2.955e-01	polymorphism_score=178.5	prediction=polymorphism	ref_cov=65/90	total_cov=97/123
RA	261	.	NC_000913	580830	0	T	A	bias_e_value=4581280	bias_p_value=0.986993	consensus_reject=FREQUENCY_CUTOFF	consensus_score=360.8	fisher_strand_p_value=0.843107	frequency=2.571e-01	ks_quality_p_value=1	major_base=T	major_cov=41/63	major_frequency=7.429e-01	minor_base=A	minor_cov=13/23	new_cov=13/23	polymorphism_frequency=2.571e-01	polymorphism_score=138.6	prediction=polymorphism	ref_cov=41/63	total_cov=54/86
RA	262	.	NC_000913	580831	0	G	A	bias_e_value=4581280	bias_p_value=0.986993	consensus_reject=FREQUENCY_CUTOFF	consensus_score=296.4	fisher_strand_p_value=0.843107	frequency=2.571e-01	ks_quality_p_value=1	major_base=G	major_cov=41/63	major_frequency=7.429e-01	minor_base=A	minor_cov=13/23	new_cov=13/23	polymorphism_frequency=2.571e-01	polymorphism_score=99.7	prediction=polymorphism	ref_cov=41/63	total_cov=54/86
RA	263	.	NC_000913	581042	0	T	G	bias_e_value=4037620	bias_p_value=0.869868	consensus_reject=FREQUENCY_CUTOFF	consensus_score=175.7	fisher_strand_p_value=0.53537	frequency=4.211e-01	ks_quality_p_value=1	major_base=T	major_cov=45/54	major_frequency=5.789e-01	minor_base=G	minor_cov=37/35	new_cov=37/35	polymorphism_frequency=4.211e-01	polymorphism_score=232.1	prediction=polymorphism	ref_cov=45/54	total_cov=83/89
RA	264	.	NC_000913	581056	0	A	G	bias_e_value=3717480	bias_p_value=0.800896	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.4	fisher_strand_p_value=0.439591	frequency=4.260e-01	ks_quality_p_value=1	major_base=A	major_cov=45/52	major_frequency=5.740e-01	minor_base=G	minor_cov=38/34	new_cov=38/34	polymorphism_frequency=4.260e-01	polymorphism_score=223.1	prediction=polymorphism	ref_cov=45/52	total_cov=83/86
RA	265	.	NC_000913	581073	0	G	A	bias_e_value=3674890	bias_p_value=0.791721	consensus_reject=FREQUENCY_CUTOFF	consensus_score=190.9	fisher_strand_p_value=0.428597	frequency=4.049e-01	ks_quality_p_value=1	major_base=G	major_cov=45/52	major_frequency=5.951e-01	minor_base=A	minor_cov=35/31	new_cov=35/31	polymorphism_frequency=4.049e-01	polymorphism_score=196.0	prediction=polymorphism	ref_cov=45/52	total_cov=80/83
RA	266	.	NC_000913	581118	0	T	C	bias_e_value=1848910	bias_p_value=0.39833	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.1	fisher_strand_p_value=0.131525	frequency=3.734e-01	ks_quality_p_value=1	major_base=T	major_cov=54/45	major_frequency=6.266e-01	minor_base=C	minor_cov=40/19	new_cov=40/19	polymorphism_frequency=3.734e-01	polymorphism_score=158.9	prediction=polymorphism	ref_cov=54/45	total_cov=95/65
RA	267	.	NC_000913	581127	0	G	A	bias_e_value=2236210	bias_p_value=0.481771	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.9	fisher_strand_p_value=0.177408	frequency=3.806e-01	ks_quality_p_value=0.992101	major_base=G	major_cov=54/42	major_frequency=6.194e-01	minor_base=A	minor_cov=40/19	new_cov=40/19	polymorphism_frequency=3.806e-01	polymorphism_score=172.8	prediction=polymorphism	ref_cov=54/42	total_cov=94/61
RA	268	.	NC_000913	581133	0	A	G	bias_e_value=1340200	bias_p_value=0.288734	consensus_reject=FREQUENCY_CUTOFF	consensus_score=120.9	fisher_strand_p_value=0.0895448	frequency=4.000e-01	ks_quality_p_value=0.923116	major_base=A	major_cov=48/42	major_frequency=6.000e-01	minor_base=G	minor_cov=41/19	new_cov=41/19	polymorphism_frequency=4.000e-01	polymorphism_score=182.5	prediction=polymorphism	ref_cov=48/42	total_cov=89/61
RA	269	.	NC_000913	581227	0	A	C	bias_e_value=1617400	bias_p_value=0.348454	consensus_reject=FREQUENCY_CUTOFF	consensus_score=69.8	fisher_strand_p_value=0.108039	frequency=4.259e-01	ks_quality_p_value=1	major_base=A	major_cov=48/45	major_frequency=5.741e-01	minor_base=C	minor_cov=45/24	new_cov=45/24	polymorphism_frequency=4.259e-01	polymorphism_score=203.1	prediction=polymorphism	ref_cov=48/45	total_cov=93/69
RA	270	.	NC_000913	590946	0	C	T	bias_e_value=17.2076	bias_p_value=3.70721e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=170.2	fisher_strand_p_value=2.2749e-07	frequency=2.421e-01	ks_quality_p_value=1	major_base=C	major_cov=31/41	major_frequency=7.579e-01	minor_base=T	minor_cov=23/0	new_cov=23/0	polymorphism_frequency=2.421e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=31/41	total_cov=54/41
RA	271	.	NC_000913	631633	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=362.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999806	major_base=A	major_cov=65/36	major_frequency=9.902e-01	minor_base=C	minor_cov=1/0	new_cov=65/36	polymorphism_frequency=9.902e-01	polymorphism_score=-6.4	prediction=consensus	ref_cov=0/0	total_cov=66/36
RA	272	.	NC_000913	754701	0	C	T	consensus_score=516.0	frequency=1	major_base=T	major_cov=72/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/70
RA	273	.	NC_000913	847955	0	G	A	bias_e_value=0.00183353	bias_p_value=3.95018e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.5	fisher_strand_p_value=1.52478e-11	frequency=3.185e-01	ks_quality_p_value=1	major_base=G	major_cov=50/42	major_frequency=6.815e-01	minor_base=A	minor_cov=0/43	new_cov=0/43	polymorphism_frequency=3.185e-01	polymorphism_score=59.6	prediction=polymorphism	ref_cov=50/42	total_cov=50/86
RA	274	.	NC_000913	851643	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=348.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=46/47	major_frequency=9.894e-01	minor_base=G	minor_cov=0/1	new_cov=46/47	polymorphism_frequency=9.894e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/48
RA	275	.	NC_000913	853928	0	C	T	consensus_score=343.6	frequency=1	major_base=T	major_cov=48/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/44
RA	276	.	NC_000913	859090	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=389.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=49/51	major_frequency=9.901e-01	minor_base=T	minor_cov=0/1	new_cov=49/51	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/52
RA	277	.	NC_000913	859320	0	C	T	consensus_score=415.6	frequency=1	major_base=T	major_cov=50/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/61
RA	278	.	NC_000913	867652	0	C	T	bias_e_value=3801670	bias_p_value=0.819034	consensus_score=339.1	fisher_strand_p_value=0.462366	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/42	major_frequency=9.892e-01	minor_base=G	minor_cov=0/1	new_cov=50/42	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/43
RA	279	.	NC_000913	867817	0	C	T	bias_e_value=3835190	bias_p_value=0.826255	consensus_score=325.3	fisher_strand_p_value=0.483516	frequency=1	ks_quality_p_value=0.975876	major_base=T	major_cov=47/43	major_frequency=9.890e-01	minor_base=C	minor_cov=0/1	new_cov=47/43	polymorphism_frequency=9.890e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/1	total_cov=47/45
RA	280	.	NC_000913	871161	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=289.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=34/50	major_frequency=9.882e-01	minor_base=G	minor_cov=0/1	new_cov=34/50	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/52
RA	281	.	NC_000913	877465	0	C	T	consensus_score=353.8	frequency=1	major_base=T	major_cov=51/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/46
RA	282	.	NC_000913	883584	0	C	T	consensus_score=520.5	frequency=1	major_base=T	major_cov=77/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=77/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=77/60
RA	283	.	NC_000913	920652	0	C	T	consensus_score=217.1	frequency=1	major_base=T	major_cov=21/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=21/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=21/42
RA	284	.	NC_000913	920740	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=199.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=26/30	major_frequency=9.825e-01	minor_base=G	minor_cov=0/1	new_cov=26/30	polymorphism_frequency=9.825e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=26/31
RA	285	.	NC_000913	934280	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=295.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=27/60	major_frequency=9.886e-01	minor_base=G	minor_cov=0/1	new_cov=27/60	polymorphism_frequency=9.886e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=27/61
RA	286	.	NC_000913	940468	0	C	T	bias_e_value=3773360	bias_p_value=0.812935	consensus_score=366.3	fisher_strand_p_value=0.454545	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=54/44	major_frequency=9.899e-01	minor_base=C	minor_cov=0/1	new_cov=54/44	polymorphism_frequency=9.899e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=54/45
RA	287	.	NC_000913	948271	0	C	T	consensus_score=460.7	frequency=1	major_base=T	major_cov=83/39	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=83/39	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=83/39
RA	288	.	NC_000913	987152	0	G	T	consensus_score=548.3	frequency=1	major_base=T	major_cov=104/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=104/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=104/41
RA	289	.	NC_000913	1028956	0	G	A	consensus_score=423.4	frequency=1	major_base=A	major_cov=48/65	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/65	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/65
RA	290	.	NC_000913	1101384	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=326.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=42/44	major_frequency=9.773e-01	minor_base=T	minor_cov=1/1	new_cov=42/44	polymorphism_frequency=9.773e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=43/46
RA	291	.	NC_000913	1172649	0	C	T	consensus_score=337.1	frequency=1	major_base=T	major_cov=57/37	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/37	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/37
RA	292	.	NC_000913	1175992	0	C	T	consensus_score=275.5	frequency=1	major_base=T	major_cov=47/29	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/29	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/29
RA	293	.	NC_000913	1196220	0	C	T	consensus_score=197.8	frequency=1	major_base=T	major_cov=33/32	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/32	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/32
RA	294	.	NC_000913	1196232	0	C	T	consensus_score=181.1	frequency=1	major_base=T	major_cov=33/27	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/27	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/27
RA	295	.	NC_000913	1196245	0	T	C	consensus_score=163.9	frequency=1	major_base=C	major_cov=31/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	296	.	NC_000913	1196247	0	A	G	consensus_score=168.5	frequency=1	major_base=G	major_cov=31/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=31/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=31/24
RA	297	.	NC_000913	1196277	0	C	T	consensus_score=132.9	frequency=1	major_base=T	major_cov=29/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/18
RA	298	.	NC_000913	1196280	0	G	C	bias_e_value=4641650	bias_p_value=1	consensus_score=130.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=C	major_cov=28/18	major_frequency=9.787e-01	minor_base=A	minor_cov=1/0	new_cov=28/18	polymorphism_frequency=9.787e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/18
RA	299	.	NC_000913	1196283	0	A	G	consensus_score=137.5	frequency=1	major_base=G	major_cov=29/18	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/18	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/18
RA	300	.	NC_000913	1196292	0	C	T	consensus_score=121.2	frequency=1	major_base=T	major_cov=29/15	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/15	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/15
RA	301	.	NC_000913	1196304	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=101.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=24/15	major_frequency=9.750e-01	minor_base=C	minor_cov=1/0	new_cov=24/15	polymorphism_frequency=9.750e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/15
RA	302	.	NC_000913	1196316	0	T	A	consensus_score=103.0	frequency=1	major_base=A	major_cov=25/14	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/14	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/14
RA	303	.	NC_000913	1196325	0	A	G	consensus_score=67.5	deleted=1	frequency=1	major_base=G	major_cov=18/10	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=18/10	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=18/10
RA	304	.	NC_000913	1196352	0	C	A	consensus_score=31.0	deleted=1	frequency=1	major_base=A	major_cov=11/6	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=11/6	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=11/6
RA	305	.	NC_000913	1268681	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=337.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=48/47	major_frequency=9.896e-01	minor_base=G	minor_cov=1/0	new_cov=48/47	polymorphism_frequency=9.896e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=49/47
RA	306	.	NC_000913	1290881	0	C	T	consensus_score=360.9	frequency=1	major_base=T	major_cov=42/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/55
RA	307	.	NC_000913	1334966	0	A	C	bias_e_value=5.57847e-08	bias_p_value=1.20183e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=291.3	fisher_strand_p_value=3.27886e-16	frequency=3.006e-01	ks_quality_p_value=1	major_base=A	major_cov=48/73	major_frequency=6.994e-01	minor_base=C	minor_cov=52/0	new_cov=52/0	polymorphism_frequency=3.006e-01	polymorphism_score=22.6	prediction=polymorphism	ref_cov=48/73	total_cov=101/73
RA	308	.	NC_000913	1337394	0	A	G	bias_e_value=1771440	bias_p_value=0.381639	consensus_score=331.3	fisher_strand_p_value=0.123422	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=60/31	major_frequency=9.785e-01	minor_base=T	minor_cov=0/2	new_cov=60/31	polymorphism_frequency=9.785e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=61/33
RA	309	.	NC_000913	1353758	0	T	A	consensus_score=345.8	frequency=1	major_base=A	major_cov=46/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/54
RA	310	.	NC_000913	1423272	0	C	T	bias_e_value=2689870	bias_p_value=0.579508	consensus_reject=FREQUENCY_CUTOFF	consensus_score=295.4	fisher_strand_p_value=0.239158	frequency=2.576e-01	ks_quality_p_value=0.994757	major_base=C	major_cov=55/43	major_frequency=7.424e-01	minor_base=T	minor_cov=15/19	new_cov=15/19	polymorphism_frequency=2.576e-01	polymorphism_score=90.6	prediction=polymorphism	ref_cov=55/43	total_cov=70/62
RA	311	.	NC_000913	1423273	0	G	A	bias_e_value=3215750	bias_p_value=0.692803	consensus_reject=FREQUENCY_CUTOFF	consensus_score=290.9	fisher_strand_p_value=0.327254	frequency=2.632e-01	ks_quality_p_value=1	major_base=G	major_cov=55/43	major_frequency=7.368e-01	minor_base=A	minor_cov=16/19	new_cov=16/19	polymorphism_frequency=2.632e-01	polymorphism_score=93.4	prediction=polymorphism	ref_cov=55/43	total_cov=71/62
RA	312	.	NC_000913	1423283	0	A	C	bias_e_value=2655380	bias_p_value=0.572076	consensus_reject=FREQUENCY_CUTOFF	consensus_score=274.3	fisher_strand_p_value=0.232767	frequency=2.519e-01	ks_quality_p_value=1	major_base=A	major_cov=58/43	major_frequency=7.481e-01	minor_base=C	minor_cov=15/19	new_cov=15/19	polymorphism_frequency=2.519e-01	polymorphism_score=98.5	prediction=polymorphism	ref_cov=58/43	total_cov=73/62
RA	313	.	NC_000913	1423284	0	A	C	bias_e_value=2123710	bias_p_value=0.457532	consensus_reject=FREQUENCY_CUTOFF	consensus_score=279.5	fisher_strand_p_value=0.162367	frequency=2.426e-01	ks_quality_p_value=1	major_base=A	major_cov=59/44	major_frequency=7.574e-01	minor_base=C	minor_cov=14/19	new_cov=14/19	polymorphism_frequency=2.426e-01	polymorphism_score=90.8	prediction=polymorphism	ref_cov=59/44	total_cov=73/63
RA	314	.	NC_000913	1423338	0	G	C	bias_e_value=3700840	bias_p_value=0.797311	consensus_reject=FREQUENCY_CUTOFF	consensus_score=353.9	fisher_strand_p_value=0.435256	frequency=2.446e-01	ks_quality_p_value=1	major_base=G	major_cov=55/50	major_frequency=7.554e-01	minor_base=C	minor_cov=15/19	new_cov=15/19	polymorphism_frequency=2.446e-01	polymorphism_score=108.4	prediction=polymorphism	ref_cov=55/50	total_cov=70/70
RA	315	.	NC_000913	1423404	0	G	T	bias_e_value=4094850	bias_p_value=0.882197	consensus_reject=FREQUENCY_CUTOFF	consensus_score=328.1	fisher_strand_p_value=0.558412	frequency=2.518e-01	ks_quality_p_value=0.995169	major_base=G	major_cov=52/52	major_frequency=7.482e-01	minor_base=T	minor_cov=15/20	new_cov=15/20	polymorphism_frequency=2.518e-01	polymorphism_score=90.2	prediction=polymorphism	ref_cov=52/52	total_cov=67/72
RA	316	.	NC_000913	1427992	0	G	T	bias_e_value=0.0743115	bias_p_value=1.60097e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.2	fisher_strand_p_value=7.26292e-10	frequency=3.365e-01	ks_quality_p_value=1	major_base=G	major_cov=39/30	major_frequency=6.635e-01	minor_base=T	minor_cov=0/35	new_cov=0/35	polymorphism_frequency=3.365e-01	polymorphism_score=10.1	prediction=polymorphism	ref_cov=39/30	total_cov=39/65
RA	317	.	NC_000913	1428856	0	C	A	bias_e_value=6.54459	bias_p_value=1.40997e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=149.3	fisher_strand_p_value=8.13881e-08	frequency=2.821e-01	ks_quality_p_value=1	major_base=C	major_cov=21/35	major_frequency=7.179e-01	minor_base=A	minor_cov=22/0	new_cov=22/0	polymorphism_frequency=2.821e-01	polymorphism_score=11.4	prediction=polymorphism	ref_cov=21/35	total_cov=43/35
RA	318	.	NC_000913	1428945	0	C	T	bias_e_value=93046.2	bias_p_value=0.0200459	consensus_reject=FREQUENCY_CUTOFF	consensus_score=222.3	fisher_strand_p_value=0.00920159	frequency=2.110e-01	ks_quality_p_value=0.318907	major_base=C	major_cov=41/45	major_frequency=7.890e-01	minor_base=T	minor_cov=4/19	new_cov=4/19	polymorphism_frequency=2.110e-01	polymorphism_score=59.5	prediction=polymorphism	ref_cov=41/45	total_cov=45/65
RA	319	.	NC_000913	1428954	0	T	A	bias_e_value=237293	bias_p_value=0.0511225	consensus_reject=FREQUENCY_CUTOFF	consensus_score=280.6	fisher_strand_p_value=0.0120034	frequency=2.321e-01	ks_quality_p_value=0.744976	major_base=T	major_cov=41/45	major_frequency=7.679e-01	minor_base=A	minor_cov=5/21	new_cov=5/21	polymorphism_frequency=2.321e-01	polymorphism_score=96.6	prediction=polymorphism	ref_cov=41/45	total_cov=46/67
RA	320	.	NC_000913	1428963	0	G	T	bias_e_value=471171	bias_p_value=0.101509	consensus_reject=FREQUENCY_CUTOFF	consensus_score=240.8	fisher_strand_p_value=0.0208401	frequency=2.252e-01	ks_quality_p_value=1	major_base=G	major_cov=40/46	major_frequency=7.748e-01	minor_base=T	minor_cov=5/20	new_cov=5/20	polymorphism_frequency=2.252e-01	polymorphism_score=54.8	prediction=polymorphism	ref_cov=40/46	total_cov=45/66
RA	321	.	NC_000913	1428966	0	T	G	bias_e_value=312946	bias_p_value=0.0674212	consensus_reject=FREQUENCY_CUTOFF	consensus_score=233.8	fisher_strand_p_value=0.0125333	frequency=2.342e-01	ks_quality_p_value=1	major_base=T	major_cov=40/45	major_frequency=7.658e-01	minor_base=G	minor_cov=5/21	new_cov=5/21	polymorphism_frequency=2.342e-01	polymorphism_score=57.9	prediction=polymorphism	ref_cov=40/45	total_cov=45/66
RA	322	.	NC_000913	1428978	0	G	A	bias_e_value=442653	bias_p_value=0.0953654	consensus_reject=FREQUENCY_CUTOFF	consensus_score=214.1	fisher_strand_p_value=0.0210449	frequency=2.342e-01	ks_quality_p_value=0.915594	major_base=G	major_cov=39/46	major_frequency=7.658e-01	minor_base=A	minor_cov=5/21	new_cov=5/21	polymorphism_frequency=2.342e-01	polymorphism_score=64.6	prediction=polymorphism	ref_cov=39/46	total_cov=44/67
RA	323	.	NC_000913	1429021	0	T	A	bias_e_value=556637	bias_p_value=0.119922	consensus_reject=FREQUENCY_CUTOFF	consensus_score=277.2	fisher_strand_p_value=0.026656	frequency=2.778e-01	ks_quality_p_value=0.965446	major_base=T	major_cov=44/47	major_frequency=7.222e-01	minor_base=A	minor_cov=9/26	new_cov=9/26	polymorphism_frequency=2.778e-01	polymorphism_score=135.6	prediction=polymorphism	ref_cov=44/47	total_cov=53/73
RA	324	.	NC_000913	1429022	0	T	A	bias_e_value=505646	bias_p_value=0.108937	consensus_reject=FREQUENCY_CUTOFF	consensus_score=265.7	fisher_strand_p_value=0.0257171	frequency=2.823e-01	ks_quality_p_value=0.885849	major_base=T	major_cov=44/45	major_frequency=7.177e-01	minor_base=A	minor_cov=9/26	new_cov=9/26	polymorphism_frequency=2.823e-01	polymorphism_score=137.3	prediction=polymorphism	ref_cov=44/45	total_cov=53/73
RA	325	.	NC_000913	1429024	0	A	C	bias_e_value=544798	bias_p_value=0.117372	consensus_reject=FREQUENCY_CUTOFF	consensus_score=173.3	fisher_strand_p_value=0.026656	frequency=2.778e-01	ks_quality_p_value=0.939399	major_base=A	major_cov=44/47	major_frequency=7.222e-01	minor_base=C	minor_cov=9/26	new_cov=9/26	polymorphism_frequency=2.778e-01	polymorphism_score=103.1	prediction=polymorphism	ref_cov=44/47	total_cov=53/73
RA	326	.	NC_000913	1429027	0	C	T	bias_e_value=563401	bias_p_value=0.121379	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.6	fisher_strand_p_value=0.026656	frequency=2.778e-01	ks_quality_p_value=0.980414	major_base=C	major_cov=44/47	major_frequency=7.222e-01	minor_base=T	minor_cov=9/26	new_cov=9/26	polymorphism_frequency=2.778e-01	polymorphism_score=88.8	prediction=polymorphism	ref_cov=44/47	total_cov=53/73
RA	327	.	NC_000913	1429069	0	T	A	bias_e_value=840897	bias_p_value=0.181163	consensus_reject=FREQUENCY_CUTOFF	consensus_score=254.0	fisher_strand_p_value=0.0749082	frequency=3.000e-01	ks_quality_p_value=0.586217	major_base=T	major_cov=36/55	major_frequency=7.000e-01	minor_base=A	minor_cov=9/30	new_cov=9/30	polymorphism_frequency=3.000e-01	polymorphism_score=155.0	prediction=polymorphism	ref_cov=36/55	total_cov=45/86
RA	328	.	NC_000913	1429072	0	A	C	bias_e_value=1114890	bias_p_value=0.240192	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.7	fisher_strand_p_value=0.0727749	frequency=3.053e-01	ks_quality_p_value=0.880746	major_base=A	major_cov=36/55	major_frequency=6.947e-01	minor_base=C	minor_cov=9/31	new_cov=9/31	polymorphism_frequency=3.053e-01	polymorphism_score=118.9	prediction=polymorphism	ref_cov=36/55	total_cov=45/87
RA	329	.	NC_000913	1429111	0	A	C	bias_e_value=2323050	bias_p_value=0.50048	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.1	fisher_strand_p_value=0.257929	frequency=3.529e-01	ks_quality_p_value=0.724882	major_base=A	major_cov=33/55	major_frequency=6.471e-01	minor_base=C	minor_cov=13/35	new_cov=13/35	polymorphism_frequency=3.529e-01	polymorphism_score=156.5	prediction=polymorphism	ref_cov=33/55	total_cov=46/92
RA	330	.	NC_000913	1429114	0	C	T	bias_e_value=2821510	bias_p_value=0.607867	consensus_reject=FREQUENCY_CUTOFF	consensus_score=143.5	fisher_strand_p_value=0.258244	frequency=3.657e-01	ks_quality_p_value=1	major_base=C	major_cov=31/54	major_frequency=6.343e-01	minor_base=T	minor_cov=13/36	new_cov=13/36	polymorphism_frequency=3.657e-01	polymorphism_score=132.5	prediction=polymorphism	ref_cov=31/54	total_cov=44/91
RA	331	.	NC_000913	1429126	0	A	C	bias_e_value=2698640	bias_p_value=0.581396	consensus_reject=FREQUENCY_CUTOFF	consensus_score=114.3	fisher_strand_p_value=0.267007	frequency=3.566e-01	ks_quality_p_value=0.895937	major_base=A	major_cov=32/60	major_frequency=6.434e-01	minor_base=C	minor_cov=13/38	new_cov=13/38	polymorphism_frequency=3.566e-01	polymorphism_score=154.2	prediction=polymorphism	ref_cov=32/60	total_cov=45/98
RA	332	.	NC_000913	1429128	0	A	G	bias_e_value=2747600	bias_p_value=0.591944	consensus_reject=FREQUENCY_CUTOFF	consensus_score=139.4	fisher_strand_p_value=0.267007	frequency=3.566e-01	ks_quality_p_value=0.923857	major_base=A	major_cov=32/60	major_frequency=6.434e-01	minor_base=G	minor_cov=13/38	new_cov=13/38	polymorphism_frequency=3.566e-01	polymorphism_score=145.8	prediction=polymorphism	ref_cov=32/60	total_cov=45/98
RA	333	.	NC_000913	1429160	0	C	G	bias_e_value=3570230	bias_p_value=0.769172	consensus_reject=FREQUENCY_CUTOFF	consensus_score=122.8	fisher_strand_p_value=0.474955	frequency=4.069e-01	ks_quality_p_value=0.848313	major_base=C	major_cov=30/56	major_frequency=5.931e-01	minor_base=G	minor_cov=17/42	new_cov=17/42	polymorphism_frequency=4.069e-01	polymorphism_score=208.4	prediction=polymorphism	ref_cov=30/56	total_cov=47/98
RA	334	.	NC_000913	1429164	0	C	G	bias_e_value=3706900	bias_p_value=0.798616	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.6	fisher_strand_p_value=0.475319	frequency=4.082e-01	ks_quality_p_value=0.91902	major_base=C	major_cov=30/57	major_frequency=5.918e-01	minor_base=G	minor_cov=17/43	new_cov=17/43	polymorphism_frequency=4.082e-01	polymorphism_score=208.1	prediction=polymorphism	ref_cov=30/57	total_cov=47/100
RA	335	.	NC_000913	1429171	0	A	G	bias_e_value=3514790	bias_p_value=0.757229	consensus_reject=FREQUENCY_CUTOFF	consensus_score=77.2	fisher_strand_p_value=0.86006	frequency=4.106e-01	ks_quality_p_value=0.453458	major_base=A	major_cov=29/60	major_frequency=5.894e-01	minor_base=G	minor_cov=19/43	new_cov=19/43	polymorphism_frequency=4.106e-01	polymorphism_score=193.6	prediction=polymorphism	ref_cov=29/60	total_cov=48/103
RA	336	.	NC_000913	1429204	0	C	T	bias_e_value=3902980	bias_p_value=0.840861	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.7	fisher_strand_p_value=0.587226	frequency=4.178e-01	ks_quality_p_value=0.83759	major_base=C	major_cov=28/57	major_frequency=5.822e-01	minor_base=T	minor_cov=17/44	new_cov=17/44	polymorphism_frequency=4.178e-01	polymorphism_score=178.8	prediction=polymorphism	ref_cov=28/57	total_cov=45/101
RA	337	.	NC_000913	1429207	0	T	G	bias_e_value=3388220	bias_p_value=0.72996	consensus_reject=FREQUENCY_CUTOFF	consensus_score=73.7	fisher_strand_p_value=0.365344	frequency=4.247e-01	ks_quality_p_value=0.991191	major_base=T	major_cov=28/56	major_frequency=5.753e-01	minor_base=G	minor_cov=16/46	new_cov=16/46	polymorphism_frequency=4.247e-01	polymorphism_score=181.1	prediction=polymorphism	ref_cov=28/56	total_cov=45/102
RA	338	.	NC_000913	1429225	0	C	T	bias_e_value=2453990	bias_p_value=0.528689	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.9	fisher_strand_p_value=0.26074	frequency=3.282e-01	ks_quality_p_value=0.783361	major_base=C	major_cov=38/50	major_frequency=6.718e-01	minor_base=T	minor_cov=14/29	new_cov=14/29	polymorphism_frequency=3.282e-01	polymorphism_score=120.4	prediction=polymorphism	ref_cov=38/50	total_cov=52/79
RA	339	.	NC_000913	1429228	0	T	C	bias_e_value=1723170	bias_p_value=0.37124	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.4	fisher_strand_p_value=0.128197	frequency=3.496e-01	ks_quality_p_value=0.924356	major_base=T	major_cov=38/42	major_frequency=6.504e-01	minor_base=C	minor_cov=14/29	new_cov=14/29	polymorphism_frequency=3.496e-01	polymorphism_score=122.2	prediction=polymorphism	ref_cov=38/42	total_cov=52/72
RA	340	.	NC_000913	1429231	0	T	C	bias_e_value=1501420	bias_p_value=0.323468	consensus_reject=FREQUENCY_CUTOFF	consensus_score=123.2	fisher_strand_p_value=0.120918	frequency=3.471e-01	ks_quality_p_value=0.802769	major_base=T	major_cov=37/42	major_frequency=6.529e-01	minor_base=C	minor_cov=13/29	new_cov=13/29	polymorphism_frequency=3.471e-01	polymorphism_score=122.3	prediction=polymorphism	ref_cov=37/42	total_cov=50/71
RA	341	.	NC_000913	1429235	0	T	C	bias_e_value=1485960	bias_p_value=0.320136	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.1	fisher_strand_p_value=0.181921	frequency=3.525e-01	ks_quality_p_value=0.525752	major_base=T	major_cov=36/43	major_frequency=6.475e-01	minor_base=C	minor_cov=14/29	new_cov=14/29	polymorphism_frequency=3.525e-01	polymorphism_score=126.4	prediction=polymorphism	ref_cov=36/43	total_cov=51/72
RA	342	.	NC_000913	1429236	0	T	A	bias_e_value=1765110	bias_p_value=0.380276	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.9	fisher_strand_p_value=0.174665	frequency=3.644e-01	ks_quality_p_value=0.702895	major_base=T	major_cov=35/40	major_frequency=6.356e-01	minor_base=A	minor_cov=14/29	new_cov=14/29	polymorphism_frequency=3.644e-01	polymorphism_score=174.6	prediction=polymorphism	ref_cov=35/40	total_cov=49/72
RA	343	.	NC_000913	1429240	0	G	T	bias_e_value=2448550	bias_p_value=0.527516	consensus_reject=FREQUENCY_CUTOFF	consensus_score=147.2	fisher_strand_p_value=0.245934	frequency=3.554e-01	ks_quality_p_value=0.827523	major_base=G	major_cov=35/43	major_frequency=6.446e-01	minor_base=T	minor_cov=14/29	new_cov=14/29	polymorphism_frequency=3.554e-01	polymorphism_score=114.8	prediction=polymorphism	ref_cov=35/43	total_cov=49/72
RA	344	.	NC_000913	1429243	0	A	C	bias_e_value=1196890	bias_p_value=0.257858	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.8	fisher_strand_p_value=0.12608	frequency=3.471e-01	ks_quality_p_value=0.56031	major_base=A	major_cov=36/43	major_frequency=6.529e-01	minor_base=C	minor_cov=13/29	new_cov=13/29	polymorphism_frequency=3.471e-01	polymorphism_score=134.5	prediction=polymorphism	ref_cov=36/43	total_cov=49/73
RA	345	.	NC_000913	1429246	0	A	T	bias_e_value=1270490	bias_p_value=0.273714	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.0	fisher_strand_p_value=0.247067	frequency=3.583e-01	ks_quality_p_value=0.310536	major_base=A	major_cov=34/43	major_frequency=6.417e-01	minor_base=T	minor_cov=14/29	new_cov=14/29	polymorphism_frequency=3.583e-01	polymorphism_score=180.0	prediction=polymorphism	ref_cov=34/43	total_cov=48/72
RA	346	.	NC_000913	1429249	0	C	T	bias_e_value=2223910	bias_p_value=0.47912	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.3	fisher_strand_p_value=0.181921	frequency=3.525e-01	ks_quality_p_value=0.95912	major_base=C	major_cov=36/43	major_frequency=6.475e-01	minor_base=T	minor_cov=14/29	new_cov=14/29	polymorphism_frequency=3.525e-01	polymorphism_score=118.0	prediction=polymorphism	ref_cov=36/43	total_cov=50/72
RA	347	.	NC_000913	1429252	0	G	A	bias_e_value=2086070	bias_p_value=0.449424	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.0	fisher_strand_p_value=0.172579	frequency=3.500e-01	ks_quality_p_value=0.915171	major_base=G	major_cov=35/43	major_frequency=6.500e-01	minor_base=A	minor_cov=13/29	new_cov=13/29	polymorphism_frequency=3.500e-01	polymorphism_score=118.8	prediction=polymorphism	ref_cov=35/43	total_cov=50/72
RA	348	.	NC_000913	1429255	0	G	A	bias_e_value=1116820	bias_p_value=0.240608	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.5	fisher_strand_p_value=0.176449	frequency=3.583e-01	ks_quality_p_value=0.364114	major_base=G	major_cov=36/41	major_frequency=6.417e-01	minor_base=A	minor_cov=14/29	new_cov=14/29	polymorphism_frequency=3.583e-01	polymorphism_score=124.9	prediction=polymorphism	ref_cov=36/41	total_cov=50/72
RA	349	.	NC_000913	1429258	0	A	G	bias_e_value=1245740	bias_p_value=0.268383	consensus_reject=FREQUENCY_CUTOFF	consensus_score=130.0	fisher_strand_p_value=0.0811886	frequency=3.388e-01	ks_quality_p_value=0.919561	major_base=A	major_cov=37/43	major_frequency=6.612e-01	minor_base=G	minor_cov=12/29	new_cov=12/29	polymorphism_frequency=3.388e-01	polymorphism_score=123.2	prediction=polymorphism	ref_cov=37/43	total_cov=50/72
RA	350	.	NC_000913	1429261	0	T	C	bias_e_value=1206520	bias_p_value=0.259933	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.6	fisher_strand_p_value=0.179854	frequency=3.496e-01	ks_quality_p_value=0.397149	major_base=T	major_cov=37/43	major_frequency=6.504e-01	minor_base=C	minor_cov=14/29	new_cov=14/29	polymorphism_frequency=3.496e-01	polymorphism_score=127.8	prediction=polymorphism	ref_cov=37/43	total_cov=51/72
RA	351	.	NC_000913	1429273	0	T	C	bias_e_value=1218680	bias_p_value=0.262553	consensus_reject=FREQUENCY_CUTOFF	consensus_score=121.4	fisher_strand_p_value=0.096139	frequency=3.615e-01	ks_quality_p_value=0.753326	major_base=T	major_cov=40/43	major_frequency=6.385e-01	minor_base=C	minor_cov=15/32	new_cov=15/32	polymorphism_frequency=3.615e-01	polymorphism_score=137.9	prediction=polymorphism	ref_cov=40/43	total_cov=55/75
RA	352	.	NC_000913	1429291	0	T	A	bias_e_value=934128	bias_p_value=0.201249	consensus_reject=FREQUENCY_CUTOFF	consensus_score=164.0	fisher_strand_p_value=0.0849691	frequency=3.554e-01	ks_quality_p_value=0.594204	major_base=T	major_cov=39/39	major_frequency=6.446e-01	minor_base=A	minor_cov=14/29	new_cov=14/29	polymorphism_frequency=3.554e-01	polymorphism_score=175.4	prediction=polymorphism	ref_cov=39/39	total_cov=53/68
RA	353	.	NC_000913	1429297	0	C	G	bias_e_value=629020	bias_p_value=0.135516	consensus_reject=FREQUENCY_CUTOFF	consensus_score=153.0	fisher_strand_p_value=0.0761452	frequency=3.419e-01	ks_quality_p_value=0.395181	major_base=C	major_cov=37/40	major_frequency=6.581e-01	minor_base=G	minor_cov=12/28	new_cov=12/28	polymorphism_frequency=3.419e-01	polymorphism_score=138.3	prediction=polymorphism	ref_cov=37/40	total_cov=49/68
RA	354	.	NC_000913	1429300	0	T	G	bias_e_value=1640960	bias_p_value=0.353528	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.8	fisher_strand_p_value=0.11033	frequency=3.717e-01	ks_quality_p_value=1	major_base=T	major_cov=32/39	major_frequency=6.283e-01	minor_base=G	minor_cov=12/30	new_cov=12/30	polymorphism_frequency=3.717e-01	polymorphism_score=122.5	prediction=polymorphism	ref_cov=32/39	total_cov=44/69
RA	355	.	NC_000913	1429319	0	G	T	bias_e_value=1709450	bias_p_value=0.368285	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.7	fisher_strand_p_value=0.117118	frequency=3.717e-01	ks_quality_p_value=1	major_base=G	major_cov=33/38	major_frequency=6.283e-01	minor_base=T	minor_cov=13/29	new_cov=13/29	polymorphism_frequency=3.717e-01	polymorphism_score=110.5	prediction=polymorphism	ref_cov=33/38	total_cov=46/67
RA	356	.	NC_000913	1429345	0	T	G	bias_e_value=3177300	bias_p_value=0.684519	consensus_reject=FREQUENCY_CUTOFF	consensus_score=107.1	fisher_strand_p_value=0.421152	frequency=3.514e-01	ks_quality_p_value=0.759612	major_base=T	major_cov=33/39	major_frequency=6.486e-01	minor_base=G	minor_cov=14/25	new_cov=14/25	polymorphism_frequency=3.514e-01	polymorphism_score=120.3	prediction=polymorphism	ref_cov=33/39	total_cov=47/64
RA	357	.	NC_000913	1429353	0	C	T	bias_e_value=2042610	bias_p_value=0.44006	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.1	fisher_strand_p_value=0.161085	frequency=3.611e-01	ks_quality_p_value=0.949246	major_base=C	major_cov=33/36	major_frequency=6.389e-01	minor_base=T	minor_cov=13/26	new_cov=13/26	polymorphism_frequency=3.611e-01	polymorphism_score=110.2	prediction=polymorphism	ref_cov=33/36	total_cov=46/62
RA	358	.	NC_000913	1429354	0	A	G	bias_e_value=1892980	bias_p_value=0.407825	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.0	fisher_strand_p_value=0.161085	frequency=3.611e-01	ks_quality_p_value=0.8458	major_base=A	major_cov=33/36	major_frequency=6.389e-01	minor_base=G	minor_cov=13/26	new_cov=13/26	polymorphism_frequency=3.611e-01	polymorphism_score=115.8	prediction=polymorphism	ref_cov=33/36	total_cov=46/62
RA	359	.	NC_000913	1429360	0	C	T	bias_e_value=2340530	bias_p_value=0.504246	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.5	fisher_strand_p_value=0.228878	frequency=3.796e-01	ks_quality_p_value=0.826737	major_base=C	major_cov=32/35	major_frequency=6.204e-01	minor_base=T	minor_cov=14/27	new_cov=14/27	polymorphism_frequency=3.796e-01	polymorphism_score=121.2	prediction=polymorphism	ref_cov=32/35	total_cov=46/62
RA	360	.	NC_000913	1429364	0	T	C	bias_e_value=1685150	bias_p_value=0.36305	consensus_reject=FREQUENCY_CUTOFF	consensus_score=85.7	fisher_strand_p_value=0.164234	frequency=3.832e-01	ks_quality_p_value=0.69832	major_base=T	major_cov=32/34	major_frequency=6.168e-01	minor_base=C	minor_cov=14/27	new_cov=14/27	polymorphism_frequency=3.832e-01	polymorphism_score=118.2	prediction=polymorphism	ref_cov=32/34	total_cov=46/62
RA	361	.	NC_000913	1429404	0	C	T	bias_e_value=1961700	bias_p_value=0.422629	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.0	fisher_strand_p_value=0.143776	frequency=3.600e-01	ks_quality_p_value=1	major_base=C	major_cov=34/30	major_frequency=6.400e-01	minor_base=T	minor_cov=13/23	new_cov=13/23	polymorphism_frequency=3.600e-01	polymorphism_score=97.2	prediction=polymorphism	ref_cov=34/30	total_cov=47/53
RA	362	.	NC_000913	1429416	0	A	G	bias_e_value=3462090	bias_p_value=0.745874	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.9	fisher_strand_p_value=0.515821	frequency=3.131e-01	ks_quality_p_value=0.733076	major_base=A	major_cov=37/31	major_frequency=6.869e-01	minor_base=G	minor_cov=14/17	new_cov=14/17	polymorphism_frequency=3.131e-01	polymorphism_score=91.9	prediction=polymorphism	ref_cov=37/31	total_cov=51/48
RA	363	.	NC_000913	1429417	0	C	T	bias_e_value=3979250	bias_p_value=0.857292	consensus_reject=FREQUENCY_CUTOFF	consensus_score=146.8	fisher_strand_p_value=0.515821	frequency=3.131e-01	ks_quality_p_value=1	major_base=C	major_cov=37/31	major_frequency=6.869e-01	minor_base=T	minor_cov=14/17	new_cov=14/17	polymorphism_frequency=3.131e-01	polymorphism_score=84.2	prediction=polymorphism	ref_cov=37/31	total_cov=51/48
RA	364	.	NC_000913	1429425	0	C	A	bias_e_value=3145850	bias_p_value=0.677745	consensus_reject=FREQUENCY_CUTOFF	consensus_score=156.1	fisher_strand_p_value=0.393107	frequency=3.100e-01	ks_quality_p_value=0.798806	major_base=C	major_cov=38/31	major_frequency=6.900e-01	minor_base=A	minor_cov=14/17	new_cov=14/17	polymorphism_frequency=3.100e-01	polymorphism_score=86.3	prediction=polymorphism	ref_cov=38/31	total_cov=52/48
RA	365	.	NC_000913	1429435	0	G	A	bias_e_value=3478440	bias_p_value=0.749396	consensus_reject=FREQUENCY_CUTOFF	consensus_score=150.0	fisher_strand_p_value=0.381776	frequency=3.030e-01	ks_quality_p_value=1	major_base=G	major_cov=38/31	major_frequency=6.970e-01	minor_base=A	minor_cov=13/17	new_cov=13/17	polymorphism_frequency=3.030e-01	polymorphism_score=82.0	prediction=polymorphism	ref_cov=38/31	total_cov=51/48
RA	366	.	NC_000913	1429442	0	A	G	bias_e_value=2853800	bias_p_value=0.614824	consensus_reject=FREQUENCY_CUTOFF	consensus_score=158.0	fisher_strand_p_value=0.26342	frequency=2.784e-01	ks_quality_p_value=1	major_base=A	major_cov=38/32	major_frequency=7.216e-01	minor_base=G	minor_cov=11/16	new_cov=11/16	polymorphism_frequency=2.784e-01	polymorphism_score=67.7	prediction=polymorphism	ref_cov=38/32	total_cov=49/49
RA	367	.	NC_000913	1429444	0	T	C	bias_e_value=2877550	bias_p_value=0.61994	consensus_reject=FREQUENCY_CUTOFF	consensus_score=151.2	fisher_strand_p_value=0.267277	frequency=2.857e-01	ks_quality_p_value=1	major_base=T	major_cov=37/33	major_frequency=7.143e-01	minor_base=C	minor_cov=11/17	new_cov=11/17	polymorphism_frequency=2.857e-01	polymorphism_score=77.5	prediction=polymorphism	ref_cov=37/33	total_cov=48/50
RA	368	.	NC_000913	1429453	0	C	T	bias_e_value=2647860	bias_p_value=0.570456	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.3	fisher_strand_p_value=0.248743	frequency=2.688e-01	ks_quality_p_value=0.931315	major_base=C	major_cov=37/31	major_frequency=7.312e-01	minor_base=T	minor_cov=10/15	new_cov=10/15	polymorphism_frequency=2.688e-01	polymorphism_score=67.5	prediction=polymorphism	ref_cov=37/31	total_cov=47/46
RA	369	.	NC_000913	1429454	0	A	G	bias_e_value=2695350	bias_p_value=0.580687	consensus_reject=FREQUENCY_CUTOFF	consensus_score=152.2	fisher_strand_p_value=0.248743	frequency=2.688e-01	ks_quality_p_value=0.959733	major_base=A	major_cov=37/31	major_frequency=7.312e-01	minor_base=G	minor_cov=10/15	new_cov=10/15	polymorphism_frequency=2.688e-01	polymorphism_score=70.5	prediction=polymorphism	ref_cov=37/31	total_cov=47/46
RA	370	.	NC_000913	1429462	0	C	T	bias_e_value=3828150	bias_p_value=0.824738	consensus_reject=FREQUENCY_CUTOFF	consensus_score=157.1	fisher_strand_p_value=0.605552	frequency=2.169e-01	ks_quality_p_value=0.775883	major_base=C	major_cov=37/28	major_frequency=7.831e-01	minor_base=T	minor_cov=9/9	new_cov=9/9	polymorphism_frequency=2.169e-01	polymorphism_score=43.2	prediction=polymorphism	ref_cov=37/28	total_cov=47/37
RA	371	.	NC_000913	1429463	0	C	G	bias_e_value=4146320	bias_p_value=0.893286	consensus_reject=FREQUENCY_CUTOFF	consensus_score=192.0	fisher_strand_p_value=0.605552	frequency=2.169e-01	ks_quality_p_value=0.949815	major_base=C	major_cov=37/28	major_frequency=7.831e-01	minor_base=G	minor_cov=9/9	new_cov=9/9	polymorphism_frequency=2.169e-01	polymorphism_score=52.7	prediction=polymorphism	ref_cov=37/28	total_cov=47/37
RA	372	.	NC_000913	1429464	0	G	C	bias_e_value=4446340	bias_p_value=0.957923	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.5	fisher_strand_p_value=0.790375	frequency=2.143e-01	ks_quality_p_value=0.916401	major_base=G	major_cov=37/29	major_frequency=7.857e-01	minor_base=C	minor_cov=9/9	new_cov=9/9	polymorphism_frequency=2.143e-01	polymorphism_score=55.8	prediction=polymorphism	ref_cov=37/29	total_cov=46/38
RA	373	.	NC_000913	1429466	0	G	C	bias_e_value=3132820	bias_p_value=0.674936	consensus_reject=FREQUENCY_CUTOFF	consensus_score=180.6	fisher_strand_p_value=0.588986	frequency=2.222e-01	ks_quality_p_value=0.529044	major_base=G	major_cov=38/25	major_frequency=7.778e-01	minor_base=C	minor_cov=9/9	new_cov=9/9	polymorphism_frequency=2.222e-01	polymorphism_score=57.4	prediction=polymorphism	ref_cov=38/25	total_cov=47/38
RA	374	.	NC_000913	1429470	0	C	T	bias_e_value=4341310	bias_p_value=0.935293	consensus_reject=FREQUENCY_CUTOFF	consensus_score=177.4	fisher_strand_p_value=0.790109	frequency=2.118e-01	ks_quality_p_value=0.838551	major_base=C	major_cov=38/29	major_frequency=7.882e-01	minor_base=T	minor_cov=9/9	new_cov=9/9	polymorphism_frequency=2.118e-01	polymorphism_score=44.2	prediction=polymorphism	ref_cov=38/29	total_cov=47/38
RA	375	.	NC_000913	1429471	0	G	C	bias_e_value=4529700	bias_p_value=0.975882	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.3	fisher_strand_p_value=0.790109	frequency=2.118e-01	ks_quality_p_value=0.998051	major_base=G	major_cov=38/29	major_frequency=7.882e-01	minor_base=C	minor_cov=9/9	new_cov=9/9	polymorphism_frequency=2.118e-01	polymorphism_score=54.7	prediction=polymorphism	ref_cov=38/29	total_cov=47/38
RA	376	.	NC_000913	1429474	0	A	G	bias_e_value=4531690	bias_p_value=0.976309	consensus_reject=FREQUENCY_CUTOFF	consensus_score=179.7	fisher_strand_p_value=0.790375	frequency=2.143e-01	ks_quality_p_value=1	major_base=A	major_cov=37/29	major_frequency=7.857e-01	minor_base=G	minor_cov=9/9	new_cov=9/9	polymorphism_frequency=2.143e-01	polymorphism_score=41.4	prediction=polymorphism	ref_cov=37/29	total_cov=47/38
RA	377	.	NC_000913	1429475	0	A	G	bias_e_value=4013680	bias_p_value=0.864709	consensus_reject=FREQUENCY_CUTOFF	consensus_score=172.7	fisher_strand_p_value=0.790109	frequency=2.118e-01	ks_quality_p_value=0.667267	major_base=A	major_cov=38/29	major_frequency=7.882e-01	minor_base=G	minor_cov=9/9	new_cov=9/9	polymorphism_frequency=2.118e-01	polymorphism_score=47.4	prediction=polymorphism	ref_cov=38/29	total_cov=47/38
RA	378	.	NC_000913	1429479	0	A	T	bias_e_value=3611730	bias_p_value=0.778113	consensus_reject=FREQUENCY_CUTOFF	consensus_score=208.1	fisher_strand_p_value=0.790375	frequency=2.143e-01	ks_quality_p_value=0.522385	major_base=A	major_cov=37/29	major_frequency=7.857e-01	minor_base=T	minor_cov=9/9	new_cov=9/9	polymorphism_frequency=2.143e-01	polymorphism_score=68.8	prediction=polymorphism	ref_cov=37/29	total_cov=47/38
RA	379	.	NC_000913	1429482	0	C	T	bias_e_value=4539480	bias_p_value=0.977988	consensus_reject=FREQUENCY_CUTOFF	consensus_score=183.4	fisher_strand_p_value=0.797652	frequency=2.209e-01	ks_quality_p_value=1	major_base=C	major_cov=38/29	major_frequency=7.791e-01	minor_base=T	minor_cov=10/9	new_cov=10/9	polymorphism_frequency=2.209e-01	polymorphism_score=43.8	prediction=polymorphism	ref_cov=38/29	total_cov=48/38
RA	380	.	NC_000913	1429484	0	G	A	bias_e_value=4207100	bias_p_value=0.90638	consensus_reject=FREQUENCY_CUTOFF	consensus_score=189.6	fisher_strand_p_value=0.603477	frequency=2.093e-01	ks_quality_p_value=0.993863	major_base=G	major_cov=39/29	major_frequency=7.907e-01	minor_base=A	minor_cov=9/9	new_cov=9/9	polymorphism_frequency=2.093e-01	polymorphism_score=42.3	prediction=polymorphism	ref_cov=39/29	total_cov=48/38
RA	381	.	NC_000913	1429492	0	T	A	bias_e_value=3961870	bias_p_value=0.853548	consensus_reject=FREQUENCY_CUTOFF	consensus_score=220.9	fisher_strand_p_value=0.603477	frequency=2.093e-01	ks_quality_p_value=0.845453	major_base=T	major_cov=39/29	major_frequency=7.907e-01	minor_base=A	minor_cov=9/9	new_cov=9/9	polymorphism_frequency=2.093e-01	polymorphism_score=66.3	prediction=polymorphism	ref_cov=39/29	total_cov=48/38
RA	382	.	NC_000913	1429493	0	G	A	bias_e_value=4135440	bias_p_value=0.890942	consensus_reject=FREQUENCY_CUTOFF	consensus_score=187.3	fisher_strand_p_value=0.603477	frequency=2.093e-01	ks_quality_p_value=0.946103	major_base=G	major_cov=39/29	major_frequency=7.907e-01	minor_base=A	minor_cov=9/9	new_cov=9/9	polymorphism_frequency=2.093e-01	polymorphism_score=43.6	prediction=polymorphism	ref_cov=39/29	total_cov=48/38
RA	383	.	NC_000913	1429495	0	G	T	bias_e_value=3853360	bias_p_value=0.83017	consensus_reject=FREQUENCY_CUTOFF	consensus_score=203.4	fisher_strand_p_value=0.595468	frequency=2.093e-01	ks_quality_p_value=0.801224	major_base=G	major_cov=40/28	major_frequency=7.907e-01	minor_base=T	minor_cov=9/9	new_cov=9/9	polymorphism_frequency=2.093e-01	polymorphism_score=46.8	prediction=polymorphism	ref_cov=40/28	total_cov=49/37
RA	384	.	NC_000913	1429510	0	A	C	bias_e_value=4641340	bias_p_value=0.999932	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.9	fisher_strand_p_value=1	frequency=3.023e-01	ks_quality_p_value=0.98838	major_base=A	major_cov=35/25	major_frequency=6.977e-01	minor_base=C	minor_cov=15/11	new_cov=15/11	polymorphism_frequency=3.023e-01	polymorphism_score=74.4	prediction=polymorphism	ref_cov=35/25	total_cov=50/36
RA	385	.	NC_000913	1429522	0	A	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=110.4	fisher_strand_p_value=1	frequency=3.059e-01	ks_quality_p_value=1	major_base=A	major_cov=33/26	major_frequency=6.941e-01	minor_base=C	minor_cov=14/12	new_cov=14/12	polymorphism_frequency=3.059e-01	polymorphism_score=77.6	prediction=polymorphism	ref_cov=33/26	total_cov=47/38
RA	386	.	NC_000913	1429534	0	C	T	bias_e_value=4470320	bias_p_value=0.963088	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.3	fisher_strand_p_value=1	frequency=3.372e-01	ks_quality_p_value=0.740898	major_base=C	major_cov=31/26	major_frequency=6.628e-01	minor_base=T	minor_cov=16/13	new_cov=16/13	polymorphism_frequency=3.372e-01	polymorphism_score=84.2	prediction=polymorphism	ref_cov=31/26	total_cov=47/39
RA	387	.	NC_000913	1429537	0	G	A	bias_e_value=4031800	bias_p_value=0.868613	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.3	fisher_strand_p_value=0.818754	frequency=3.333e-01	ks_quality_p_value=0.651439	major_base=G	major_cov=30/26	major_frequency=6.667e-01	minor_base=A	minor_cov=16/12	new_cov=16/12	polymorphism_frequency=3.333e-01	polymorphism_score=81.6	prediction=polymorphism	ref_cov=30/26	total_cov=47/38
RA	388	.	NC_000913	1429543	0	G	A	bias_e_value=4638260	bias_p_value=0.999269	consensus_reject=FREQUENCY_CUTOFF	consensus_score=111.5	fisher_strand_p_value=1	frequency=3.256e-01	ks_quality_p_value=0.962019	major_base=G	major_cov=32/26	major_frequency=6.744e-01	minor_base=A	minor_cov=16/12	new_cov=16/12	polymorphism_frequency=3.256e-01	polymorphism_score=78.1	prediction=polymorphism	ref_cov=32/26	total_cov=48/39
RA	389	.	NC_000913	1429550	0	T	G	bias_e_value=3443660	bias_p_value=0.741904	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.6	fisher_strand_p_value=0.374076	frequency=3.407e-01	ks_quality_p_value=1	major_base=T	major_cov=32/28	major_frequency=6.593e-01	minor_base=G	minor_cov=20/11	new_cov=20/11	polymorphism_frequency=3.407e-01	polymorphism_score=92.4	prediction=polymorphism	ref_cov=32/28	total_cov=52/39
RA	390	.	NC_000913	1429551	0	C	A	bias_e_value=3443660	bias_p_value=0.741904	consensus_reject=FREQUENCY_CUTOFF	consensus_score=126.1	fisher_strand_p_value=0.374076	frequency=3.407e-01	ks_quality_p_value=1	major_base=C	major_cov=32/28	major_frequency=6.593e-01	minor_base=A	minor_cov=20/11	new_cov=20/11	polymorphism_frequency=3.407e-01	polymorphism_score=80.7	prediction=polymorphism	ref_cov=32/28	total_cov=52/39
RA	391	.	NC_000913	1429558	0	T	C	bias_e_value=2754290	bias_p_value=0.593387	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.9	fisher_strand_p_value=0.277405	frequency=3.478e-01	ks_quality_p_value=0.89295	major_base=T	major_cov=32/28	major_frequency=6.522e-01	minor_base=C	minor_cov=21/11	new_cov=21/11	polymorphism_frequency=3.478e-01	polymorphism_score=97.5	prediction=polymorphism	ref_cov=32/28	total_cov=53/39
RA	392	.	NC_000913	1429562	0	A	G	bias_e_value=2878720	bias_p_value=0.620192	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.9	fisher_strand_p_value=0.267468	frequency=3.556e-01	ks_quality_p_value=1	major_base=A	major_cov=30/28	major_frequency=6.444e-01	minor_base=G	minor_cov=21/11	new_cov=21/11	polymorphism_frequency=3.556e-01	polymorphism_score=92.6	prediction=polymorphism	ref_cov=30/28	total_cov=51/39
RA	393	.	NC_000913	1429569	0	G	A	bias_e_value=2357460	bias_p_value=0.507893	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.6	fisher_strand_p_value=0.191421	frequency=3.596e-01	ks_quality_p_value=1	major_base=G	major_cov=29/28	major_frequency=6.404e-01	minor_base=A	minor_cov=21/11	new_cov=21/11	polymorphism_frequency=3.596e-01	polymorphism_score=90.5	prediction=polymorphism	ref_cov=29/28	total_cov=50/39
RA	394	.	NC_000913	1429571	0	A	G	bias_e_value=2338980	bias_p_value=0.50391	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.6	fisher_strand_p_value=0.191421	frequency=3.596e-01	ks_quality_p_value=0.987463	major_base=A	major_cov=29/28	major_frequency=6.404e-01	minor_base=G	minor_cov=21/11	new_cov=21/11	polymorphism_frequency=3.596e-01	polymorphism_score=96.2	prediction=polymorphism	ref_cov=29/28	total_cov=50/39
RA	395	.	NC_000913	1429580	0	A	G	bias_e_value=1783430	bias_p_value=0.384223	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.2	fisher_strand_p_value=0.125418	frequency=3.750e-01	ks_quality_p_value=0.993958	major_base=A	major_cov=27/28	major_frequency=6.250e-01	minor_base=G	minor_cov=22/11	new_cov=22/11	polymorphism_frequency=3.750e-01	polymorphism_score=100.8	prediction=polymorphism	ref_cov=27/28	total_cov=50/39
RA	396	.	NC_000913	1429597	0	A	G	bias_e_value=2194690	bias_p_value=0.472825	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.2	fisher_strand_p_value=0.175006	frequency=3.721e-01	ks_quality_p_value=0.976539	major_base=A	major_cov=28/26	major_frequency=6.279e-01	minor_base=G	minor_cov=22/10	new_cov=22/10	polymorphism_frequency=3.721e-01	polymorphism_score=96.1	prediction=polymorphism	ref_cov=28/26	total_cov=50/36
RA	397	.	NC_000913	1429598	0	T	G	bias_e_value=2207390	bias_p_value=0.47556	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.3	fisher_strand_p_value=0.172452	frequency=3.810e-01	ks_quality_p_value=1	major_base=T	major_cov=27/25	major_frequency=6.190e-01	minor_base=G	minor_cov=22/10	new_cov=22/10	polymorphism_frequency=3.810e-01	polymorphism_score=104.2	prediction=polymorphism	ref_cov=27/25	total_cov=50/36
RA	398	.	NC_000913	1429599	0	C	A	bias_e_value=2208680	bias_p_value=0.475838	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.5	fisher_strand_p_value=0.175006	frequency=3.721e-01	ks_quality_p_value=0.986313	major_base=C	major_cov=28/26	major_frequency=6.279e-01	minor_base=A	minor_cov=22/10	new_cov=22/10	polymorphism_frequency=3.721e-01	polymorphism_score=88.5	prediction=polymorphism	ref_cov=28/26	total_cov=50/36
RA	399	.	NC_000913	1429609	0	T	C	bias_e_value=3441310	bias_p_value=0.741397	consensus_reject=FREQUENCY_CUTOFF	consensus_score=75.3	fisher_strand_p_value=0.373561	frequency=3.793e-01	ks_quality_p_value=1	major_base=T	major_cov=28/26	major_frequency=6.207e-01	minor_base=C	minor_cov=21/12	new_cov=21/12	polymorphism_frequency=3.793e-01	polymorphism_score=94.6	prediction=polymorphism	ref_cov=28/26	total_cov=49/38
RA	400	.	NC_000913	1429612	0	C	A	bias_e_value=2859740	bias_p_value=0.616105	consensus_reject=FREQUENCY_CUTOFF	consensus_score=92.5	fisher_strand_p_value=0.274588	frequency=3.750e-01	ks_quality_p_value=0.96283	major_base=C	major_cov=28/27	major_frequency=6.250e-01	minor_base=A	minor_cov=21/12	new_cov=21/12	polymorphism_frequency=3.750e-01	polymorphism_score=90.9	prediction=polymorphism	ref_cov=28/27	total_cov=49/39
RA	401	.	NC_000913	1429615	0	T	C	bias_e_value=3966530	bias_p_value=0.854551	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.4	fisher_strand_p_value=0.511706	frequency=3.548e-01	ks_quality_p_value=1	major_base=T	major_cov=33/27	major_frequency=6.452e-01	minor_base=C	minor_cov=21/12	new_cov=21/12	polymorphism_frequency=3.548e-01	polymorphism_score=93.5	prediction=polymorphism	ref_cov=33/27	total_cov=54/39
RA	402	.	NC_000913	1429632	0	G	A	bias_e_value=3989900	bias_p_value=0.859587	consensus_reject=FREQUENCY_CUTOFF	consensus_score=93.0	fisher_strand_p_value=0.519305	frequency=3.789e-01	ks_quality_p_value=1	major_base=G	major_cov=35/24	major_frequency=6.211e-01	minor_base=A	minor_cov=24/12	new_cov=24/12	polymorphism_frequency=3.789e-01	polymorphism_score=100.6	prediction=polymorphism	ref_cov=35/24	total_cov=60/36
RA	403	.	NC_000913	1429682	0	T	G	bias_e_value=1426930	bias_p_value=0.307419	consensus_reject=FREQUENCY_CUTOFF	consensus_score=59.4	fisher_strand_p_value=0.107703	frequency=3.738e-01	ks_quality_p_value=0.838348	major_base=T	major_cov=36/31	major_frequency=6.262e-01	minor_base=G	minor_cov=28/12	new_cov=28/12	polymorphism_frequency=3.738e-01	polymorphism_score=135.1	prediction=polymorphism	ref_cov=36/31	total_cov=64/43
RA	404	.	NC_000913	1429692	0	T	A	bias_e_value=1598800	bias_p_value=0.344446	consensus_reject=FREQUENCY_CUTOFF	consensus_score=137.3	fisher_strand_p_value=0.159508	frequency=3.611e-01	ks_quality_p_value=0.666074	major_base=T	major_cov=38/31	major_frequency=6.389e-01	minor_base=A	minor_cov=27/12	new_cov=27/12	polymorphism_frequency=3.611e-01	polymorphism_score=163.8	prediction=polymorphism	ref_cov=38/31	total_cov=65/43
RA	405	.	NC_000913	1429702	0	A	C	bias_e_value=2555850	bias_p_value=0.550635	consensus_reject=FREQUENCY_CUTOFF	consensus_score=109.5	fisher_strand_p_value=0.21837	frequency=3.519e-01	ks_quality_p_value=1	major_base=A	major_cov=38/32	major_frequency=6.481e-01	minor_base=C	minor_cov=26/12	new_cov=26/12	polymorphism_frequency=3.519e-01	polymorphism_score=112.5	prediction=polymorphism	ref_cov=38/32	total_cov=64/44
RA	406	.	NC_000913	1429708	0	A	G	bias_e_value=1213830	bias_p_value=0.261508	consensus_reject=FREQUENCY_CUTOFF	consensus_score=119.5	fisher_strand_p_value=0.0720956	frequency=3.455e-01	ks_quality_p_value=0.999044	major_base=A	major_cov=36/36	major_frequency=6.545e-01	minor_base=G	minor_cov=26/12	new_cov=26/12	polymorphism_frequency=3.455e-01	polymorphism_score=114.4	prediction=polymorphism	ref_cov=36/36	total_cov=62/48
RA	407	.	NC_000913	1429714	0	A	C	bias_e_value=2031610	bias_p_value=0.43769	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.1	fisher_strand_p_value=0.151651	frequency=3.585e-01	ks_quality_p_value=1	major_base=A	major_cov=36/32	major_frequency=6.415e-01	minor_base=C	minor_cov=26/12	new_cov=26/12	polymorphism_frequency=3.585e-01	polymorphism_score=115.8	prediction=polymorphism	ref_cov=36/32	total_cov=62/44
RA	408	.	NC_000913	1429724	0	A	G	bias_e_value=2510880	bias_p_value=0.540946	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.4	fisher_strand_p_value=0.212265	frequency=3.689e-01	ks_quality_p_value=0.999049	major_base=A	major_cov=35/30	major_frequency=6.311e-01	minor_base=G	minor_cov=26/12	new_cov=26/12	polymorphism_frequency=3.689e-01	polymorphism_score=111.5	prediction=polymorphism	ref_cov=35/30	total_cov=61/42
RA	409	.	NC_000913	1429732	0	G	A	bias_e_value=2511390	bias_p_value=0.541055	consensus_reject=FREQUENCY_CUTOFF	consensus_score=100.2	fisher_strand_p_value=0.212134	frequency=3.725e-01	ks_quality_p_value=1	major_base=G	major_cov=35/29	major_frequency=6.275e-01	minor_base=A	minor_cov=26/12	new_cov=26/12	polymorphism_frequency=3.725e-01	polymorphism_score=106.0	prediction=polymorphism	ref_cov=35/29	total_cov=61/42
RA	410	.	NC_000913	1429735	0	A	G	bias_e_value=2328970	bias_p_value=0.501755	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.1	fisher_strand_p_value=0.212265	frequency=3.689e-01	ks_quality_p_value=0.884411	major_base=A	major_cov=35/30	major_frequency=6.311e-01	minor_base=G	minor_cov=26/12	new_cov=26/12	polymorphism_frequency=3.689e-01	polymorphism_score=117.5	prediction=polymorphism	ref_cov=35/30	total_cov=61/42
RA	411	.	NC_000913	1429741	0	A	G	bias_e_value=2493650	bias_p_value=0.537234	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.8	fisher_strand_p_value=0.212134	frequency=3.725e-01	ks_quality_p_value=0.988425	major_base=A	major_cov=35/29	major_frequency=6.275e-01	minor_base=G	minor_cov=26/12	new_cov=26/12	polymorphism_frequency=3.725e-01	polymorphism_score=114.8	prediction=polymorphism	ref_cov=35/29	total_cov=61/41
RA	412	.	NC_000913	1429744	0	T	C	bias_e_value=2538790	bias_p_value=0.546958	consensus_reject=FREQUENCY_CUTOFF	consensus_score=95.5	fisher_strand_p_value=0.215963	frequency=3.762e-01	ks_quality_p_value=1	major_base=T	major_cov=35/28	major_frequency=6.238e-01	minor_base=C	minor_cov=26/12	new_cov=26/12	polymorphism_frequency=3.762e-01	polymorphism_score=105.7	prediction=polymorphism	ref_cov=35/28	total_cov=61/41
RA	413	.	NC_000913	1429747	0	G	C	bias_e_value=1997170	bias_p_value=0.430271	consensus_reject=FREQUENCY_CUTOFF	consensus_score=106.4	fisher_strand_p_value=0.149296	frequency=3.725e-01	ks_quality_p_value=0.989605	major_base=G	major_cov=34/30	major_frequency=6.275e-01	minor_base=C	minor_cov=26/12	new_cov=26/12	polymorphism_frequency=3.725e-01	polymorphism_score=134.3	prediction=polymorphism	ref_cov=34/30	total_cov=60/42
RA	414	.	NC_000913	1429750	0	C	T	bias_e_value=2473710	bias_p_value=0.532938	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.5	fisher_strand_p_value=0.20956	frequency=3.762e-01	ks_quality_p_value=0.987498	major_base=C	major_cov=34/29	major_frequency=6.238e-01	minor_base=T	minor_cov=26/12	new_cov=26/12	polymorphism_frequency=3.762e-01	polymorphism_score=112.3	prediction=polymorphism	ref_cov=34/29	total_cov=60/41
RA	415	.	NC_000913	1429753	0	G	A	bias_e_value=1274940	bias_p_value=0.274675	consensus_reject=FREQUENCY_CUTOFF	consensus_score=67.8	fisher_strand_p_value=0.141197	frequency=3.878e-01	ks_quality_p_value=0.546028	major_base=G	major_cov=31/29	major_frequency=6.122e-01	minor_base=A	minor_cov=26/12	new_cov=26/12	polymorphism_frequency=3.878e-01	polymorphism_score=114.9	prediction=polymorphism	ref_cov=31/29	total_cov=57/41
RA	416	.	NC_000913	1429756	0	C	A	bias_e_value=1508940	bias_p_value=0.325087	consensus_reject=FREQUENCY_CUTOFF	consensus_score=89.0	fisher_strand_p_value=0.0977649	frequency=3.939e-01	ks_quality_p_value=1	major_base=C	major_cov=31/29	major_frequency=6.061e-01	minor_base=A	minor_cov=27/12	new_cov=27/12	polymorphism_frequency=3.939e-01	polymorphism_score=100.7	prediction=polymorphism	ref_cov=31/29	total_cov=58/41
RA	417	.	NC_000913	1429759	0	G	A	bias_e_value=1960120	bias_p_value=0.42229	consensus_reject=FREQUENCY_CUTOFF	consensus_score=87.3	fisher_strand_p_value=0.143601	frequency=3.800e-01	ks_quality_p_value=1	major_base=G	major_cov=32/30	major_frequency=6.200e-01	minor_base=A	minor_cov=26/12	new_cov=26/12	polymorphism_frequency=3.800e-01	polymorphism_score=107.9	prediction=polymorphism	ref_cov=32/30	total_cov=58/42
RA	418	.	NC_000913	1429767	0	C	T	bias_e_value=1901800	bias_p_value=0.409725	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.1	fisher_strand_p_value=0.148	frequency=3.878e-01	ks_quality_p_value=0.927038	major_base=C	major_cov=32/28	major_frequency=6.122e-01	minor_base=T	minor_cov=26/12	new_cov=26/12	polymorphism_frequency=3.878e-01	polymorphism_score=109.1	prediction=polymorphism	ref_cov=32/28	total_cov=59/40
RA	419	.	NC_000913	1429780	0	A	G	bias_e_value=1812630	bias_p_value=0.390514	consensus_reject=FREQUENCY_CUTOFF	consensus_score=101.7	fisher_strand_p_value=0.127699	frequency=3.511e-01	ks_quality_p_value=1	major_base=A	major_cov=32/29	major_frequency=6.489e-01	minor_base=G	minor_cov=23/10	new_cov=23/10	polymorphism_frequency=3.511e-01	polymorphism_score=95.2	prediction=polymorphism	ref_cov=32/29	total_cov=56/39
RA	420	.	NC_000913	1429783	0	G	A	bias_e_value=1807870	bias_p_value=0.389488	consensus_reject=FREQUENCY_CUTOFF	consensus_score=98.3	fisher_strand_p_value=0.127265	frequency=3.579e-01	ks_quality_p_value=0.999503	major_base=G	major_cov=32/29	major_frequency=6.421e-01	minor_base=A	minor_cov=24/10	new_cov=24/10	polymorphism_frequency=3.579e-01	polymorphism_score=95.6	prediction=polymorphism	ref_cov=32/29	total_cov=56/39
RA	421	.	NC_000913	1429816	0	C	T	bias_e_value=740846	bias_p_value=0.159608	consensus_reject=FREQUENCY_CUTOFF	consensus_score=125.1	fisher_strand_p_value=0.0419171	frequency=3.077e-01	ks_quality_p_value=0.887224	major_base=C	major_cov=30/33	major_frequency=6.923e-01	minor_base=T	minor_cov=20/8	new_cov=20/8	polymorphism_frequency=3.077e-01	polymorphism_score=77.8	prediction=polymorphism	ref_cov=30/33	total_cov=50/41
RA	422	.	NC_000913	1429820	0	A	G	bias_e_value=1589500	bias_p_value=0.342442	consensus_reject=FREQUENCY_CUTOFF	consensus_score=129.4	fisher_strand_p_value=0.105352	frequency=2.967e-01	ks_quality_p_value=1	major_base=A	major_cov=32/32	major_frequency=7.033e-01	minor_base=G	minor_cov=19/8	new_cov=19/8	polymorphism_frequency=2.967e-01	polymorphism_score=74.5	prediction=polymorphism	ref_cov=32/32	total_cov=51/40
RA	423	.	NC_000913	1429823	0	A	C	bias_e_value=1412930	bias_p_value=0.304402	consensus_reject=FREQUENCY_CUTOFF	consensus_score=117.5	fisher_strand_p_value=0.105352	frequency=2.967e-01	ks_quality_p_value=0.84518	major_base=A	major_cov=32/32	major_frequency=7.033e-01	minor_base=C	minor_cov=19/8	new_cov=19/8	polymorphism_frequency=2.967e-01	polymorphism_score=78.8	prediction=polymorphism	ref_cov=32/32	total_cov=51/40
RA	424	.	NC_000913	1429851	0	G	A	bias_e_value=3718510	bias_p_value=0.801118	consensus_reject=FREQUENCY_CUTOFF	consensus_score=162.4	fisher_strand_p_value=0.439862	frequency=2.410e-01	ks_quality_p_value=1	major_base=G	major_cov=33/30	major_frequency=7.590e-01	minor_base=A	minor_cov=13/7	new_cov=13/7	polymorphism_frequency=2.410e-01	polymorphism_score=49.2	prediction=polymorphism	ref_cov=33/30	total_cov=46/37
RA	425	.	NC_000913	1429858	0	C	T	bias_e_value=3629710	bias_p_value=0.781986	consensus_reject=FREQUENCY_CUTOFF	consensus_score=166.7	fisher_strand_p_value=0.438478	frequency=2.289e-01	ks_quality_p_value=0.951667	major_base=C	major_cov=33/31	major_frequency=7.711e-01	minor_base=T	minor_cov=12/7	new_cov=12/7	polymorphism_frequency=2.289e-01	polymorphism_score=48.8	prediction=polymorphism	ref_cov=33/31	total_cov=45/38
RA	426	.	NC_000913	1429861	0	G	C	bias_e_value=4196020	bias_p_value=0.903992	consensus_reject=FREQUENCY_CUTOFF	consensus_score=198.3	fisher_strand_p_value=0.595138	frequency=2.195e-01	ks_quality_p_value=1	major_base=G	major_cov=33/31	major_frequency=7.805e-01	minor_base=C	minor_cov=11/7	new_cov=11/7	polymorphism_frequency=2.195e-01	polymorphism_score=52.4	prediction=polymorphism	ref_cov=33/31	total_cov=45/38
RA	427	.	NC_000913	1429863	0	A	G	bias_e_value=3712390	bias_p_value=0.7998	consensus_reject=FREQUENCY_CUTOFF	consensus_score=160.7	fisher_strand_p_value=0.438478	frequency=2.289e-01	ks_quality_p_value=0.999505	major_base=A	major_cov=33/31	major_frequency=7.711e-01	minor_base=G	minor_cov=12/7	new_cov=12/7	polymorphism_frequency=2.289e-01	polymorphism_score=47.5	prediction=polymorphism	ref_cov=33/31	total_cov=45/38
RA	428	.	NC_000913	1429888	0	C	T	bias_e_value=2954570	bias_p_value=0.636533	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.2	fisher_strand_p_value=0.293677	frequency=2.250e-01	ks_quality_p_value=0.953704	major_base=C	major_cov=32/30	major_frequency=7.750e-01	minor_base=T	minor_cov=12/6	new_cov=12/6	polymorphism_frequency=2.250e-01	polymorphism_score=44.7	prediction=polymorphism	ref_cov=32/30	total_cov=45/36
RA	429	.	NC_000913	1429897	0	T	A	bias_e_value=3905510	bias_p_value=0.841405	consensus_reject=FREQUENCY_CUTOFF	consensus_score=195.1	fisher_strand_p_value=0.58312	frequency=2.125e-01	ks_quality_p_value=0.844804	major_base=T	major_cov=34/29	major_frequency=7.875e-01	minor_base=A	minor_cov=11/6	new_cov=11/6	polymorphism_frequency=2.125e-01	polymorphism_score=61.0	prediction=polymorphism	ref_cov=34/29	total_cov=45/36
RA	430	.	NC_000913	1429906	0	G	A	bias_e_value=2602900	bias_p_value=0.56077	consensus_reject=FREQUENCY_CUTOFF	consensus_score=171.8	fisher_strand_p_value=0.267827	frequency=2.051e-01	ks_quality_p_value=0.840464	major_base=G	major_cov=32/30	major_frequency=7.949e-01	minor_base=A	minor_cov=11/5	new_cov=11/5	polymorphism_frequency=2.051e-01	polymorphism_score=37.7	prediction=polymorphism	ref_cov=32/30	total_cov=43/35
RA	431	.	NC_000913	1448396	0	G	A	consensus_score=390.9	frequency=1	major_base=A	major_cov=50/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/61
RA	432	.	NC_000913	1456172	0	T	C	consensus_score=377.3	frequency=1	major_base=C	major_cov=51/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/51
RA	433	.	NC_000913	1471127	0	G	A	consensus_score=374.5	frequency=1	major_base=A	major_cov=57/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/52
RA	434	.	NC_000913	1479404	0	G	C	consensus_score=348.2	frequency=1	major_base=C	major_cov=48/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/45
RA	435	.	NC_000913	1482688	0	G	A	consensus_score=346.7	frequency=1	major_base=A	major_cov=49/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/44
RA	436	.	NC_000913	1488894	0	G	A	consensus_score=440.8	frequency=1	major_base=A	major_cov=49/70	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/70	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/70
RA	437	.	NC_000913	1488917	0	G	A	consensus_score=423.0	frequency=1	major_base=A	major_cov=53/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/61
RA	438	.	NC_000913	1493967	0	G	A	bias_e_value=2640610	bias_p_value=0.568895	consensus_score=301.5	fisher_strand_p_value=0.230592	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=41/46	major_frequency=9.775e-01	minor_base=G	minor_cov=2/0	new_cov=41/46	polymorphism_frequency=9.775e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=43/46
RA	439	.	NC_000913	1494388	0	C	.	bias_e_value=2391530	bias_p_value=0.515232	consensus_score=433.0	fisher_strand_p_value=0.195891	frequency=1	ks_quality_p_value=1	major_base=.	major_cov=39/51	major_frequency=9.783e-01	minor_base=C	minor_cov=2/0	new_cov=39/51	polymorphism_frequency=9.783e-01	polymorphism_score=1.3	prediction=consensus	ref_cov=2/0	total_cov=41/51
RA	440	.	NC_000913	1494823	0	G	A	consensus_score=361.3	frequency=1	major_base=A	major_cov=52/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/46
RA	441	.	NC_000913	1496015	0	G	A	consensus_score=419.6	frequency=1	major_base=A	major_cov=63/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/53
RA	442	.	NC_000913	1496955	0	G	A	consensus_score=458.6	frequency=1	major_base=A	major_cov=52/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/74
RA	443	.	NC_000913	1501745	0	G	A	consensus_score=428.6	frequency=1	major_base=A	major_cov=50/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/69
RA	444	.	NC_000913	1502770	0	T	C	bias_e_value=26.7829	bias_p_value=5.77013e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.6	fisher_strand_p_value=3.64636e-07	frequency=2.478e-01	ks_quality_p_value=1	major_base=T	major_cov=47/38	major_frequency=7.522e-01	minor_base=C	minor_cov=1/27	new_cov=1/27	polymorphism_frequency=2.478e-01	polymorphism_score=23.4	prediction=polymorphism	ref_cov=47/38	total_cov=48/65
RA	445	.	NC_000913	1502772	0	G	A	bias_e_value=5.32689	bias_p_value=1.14763e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.4	fisher_strand_p_value=6.54201e-08	frequency=2.252e-01	ks_quality_p_value=1	major_base=G	major_cov=48/38	major_frequency=7.748e-01	minor_base=A	minor_cov=0/25	new_cov=0/25	polymorphism_frequency=2.252e-01	polymorphism_score=19.9	prediction=polymorphism	ref_cov=48/38	total_cov=48/63
RA	446	.	NC_000913	1503855	0	G	A	bias_e_value=3699010	bias_p_value=0.796917	consensus_score=419.9	fisher_strand_p_value=0.434783	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=49/65	major_frequency=9.913e-01	minor_base=C	minor_cov=1/0	new_cov=49/65	polymorphism_frequency=9.913e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/65
RA	447	.	NC_000913	1514035	0	G	A	consensus_score=329.1	frequency=1	major_base=A	major_cov=42/51	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/51	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/51
RA	448	.	NC_000913	1516914	0	G	A	consensus_score=275.6	frequency=1	major_base=A	major_cov=44/33	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=44/33	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=44/33
RA	449	.	NC_000913	1517508	0	G	T	bias_e_value=4641650	bias_p_value=1	consensus_score=354.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=34/65	major_frequency=9.900e-01	minor_base=C	minor_cov=0/1	new_cov=34/65	polymorphism_frequency=9.900e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=34/66
RA	450	.	NC_000913	1521013	0	G	A	bias_e_value=4641620	bias_p_value=0.999993	consensus_score=421.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.996385	major_base=A	major_cov=67/50	major_frequency=9.915e-01	minor_base=C	minor_cov=1/0	new_cov=67/50	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/50
RA	451	.	NC_000913	1521886	0	T	C	consensus_score=296.1	frequency=1	major_base=C	major_cov=35/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/46
RA	452	.	NC_000913	1523460	0	G	A	consensus_score=339.9	frequency=1	major_base=A	major_cov=38/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=38/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=38/55
RA	453	.	NC_000913	1530398	0	G	A	consensus_score=453.7	frequency=1	major_base=A	major_cov=68/61	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=68/61	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=68/61
RA	454	.	NC_000913	1530970	0	G	A	bias_e_value=4641600	bias_p_value=0.999988	consensus_score=370.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.995158	major_base=A	major_cov=63/38	major_frequency=9.902e-01	minor_base=G	minor_cov=1/0	new_cov=63/38	polymorphism_frequency=9.902e-01	polymorphism_score=-4.7	prediction=consensus	ref_cov=1/0	total_cov=64/38
RA	455	.	NC_000913	1531947	0	G	A	consensus_score=537.6	frequency=1	major_base=A	major_cov=55/96	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/96	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/96
RA	456	.	NC_000913	1542541	0	G	A	consensus_score=378.3	frequency=1	major_base=A	major_cov=54/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/48
RA	457	.	NC_000913	1554211	0	G	A	consensus_score=312.7	frequency=1	major_base=A	major_cov=29/56	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=29/56	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=29/56
RA	458	.	NC_000913	1556691	0	T	G	bias_e_value=4720.25	bias_p_value=0.00101693	consensus_reject=FREQUENCY_CUTOFF	consensus_score=199.7	fisher_strand_p_value=9.95548e-05	frequency=2.083e-01	ks_quality_p_value=1	major_base=T	major_cov=33/43	major_frequency=7.917e-01	minor_base=G	minor_cov=0/20	new_cov=0/20	polymorphism_frequency=2.083e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=33/43	total_cov=33/65
RA	459	.	NC_000913	1560620	0	C	T	consensus_score=333.3	frequency=1	major_base=T	major_cov=50/46	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/46	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/46
RA	460	.	NC_000913	1566443	0	G	A	bias_e_value=3933040	bias_p_value=0.847337	consensus_score=516.1	fisher_strand_p_value=0.501103	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=79/67	major_frequency=9.865e-01	minor_base=C	minor_cov=2/0	new_cov=79/67	polymorphism_frequency=9.865e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=81/67
RA	461	.	NC_000913	1566986	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=441.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=68/52	major_frequency=9.917e-01	minor_base=C	minor_cov=1/0	new_cov=68/52	polymorphism_frequency=9.917e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=69/53
RA	462	.	NC_000913	1571269	0	G	A	consensus_score=129.0	frequency=1	major_base=A	major_cov=25/34	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=25/34	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=25/34
RA	463	.	NC_000913	1577330	0	T	G	bias_e_value=12.1571	bias_p_value=2.61912e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=240.8	fisher_strand_p_value=1.57153e-07	frequency=2.178e-01	ks_quality_p_value=1	major_base=T	major_cov=47/32	major_frequency=7.822e-01	minor_base=G	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.178e-01	polymorphism_score=14.9	prediction=polymorphism	ref_cov=47/32	total_cov=48/54
RA	464	.	NC_000913	1578108	0	G	A	consensus_score=428.0	frequency=1	major_base=A	major_cov=56/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/59
RA	465	.	NC_000913	1579973	0	C	A	bias_e_value=0.855479	bias_p_value=1.84305e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=271.4	fisher_strand_p_value=9.46325e-09	frequency=2.302e-01	ks_quality_p_value=1	major_base=C	major_cov=52/55	major_frequency=7.698e-01	minor_base=A	minor_cov=32/0	new_cov=32/0	polymorphism_frequency=2.302e-01	polymorphism_score=14.4	prediction=polymorphism	ref_cov=52/55	total_cov=84/55
RA	466	.	NC_000913	1582088	0	G	A	consensus_score=454.5	frequency=1	major_base=A	major_cov=56/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/67
RA	467	.	NC_000913	1590442	0	G	A	consensus_score=473.5	frequency=1	major_base=A	major_cov=50/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=50/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/75
RA	468	.	NC_000913	1597414	0	C	T	consensus_score=389.0	frequency=1	major_base=T	major_cov=58/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/53
RA	469	.	NC_000913	1611435	0	C	T	consensus_score=420.7	frequency=1	major_base=T	major_cov=54/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/66
RA	470	.	NC_000913	1611547	0	C	A	bias_e_value=188.808	bias_p_value=4.0677e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=272.5	fisher_strand_p_value=2.96277e-06	frequency=2.203e-01	ks_quality_p_value=1	major_base=C	major_cov=42/50	major_frequency=7.797e-01	minor_base=A	minor_cov=0/26	new_cov=0/26	polymorphism_frequency=2.203e-01	polymorphism_score=43.9	prediction=polymorphism	ref_cov=42/50	total_cov=44/76
RA	471	.	NC_000913	1631903	0	G	T	bias_e_value=1.82147e-06	bias_p_value=3.92419e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=250.8	fisher_strand_p_value=1.18681e-14	frequency=3.175e-01	ks_quality_p_value=1	major_base=G	major_cov=58/28	major_frequency=6.825e-01	minor_base=T	minor_cov=0/40	new_cov=0/40	polymorphism_frequency=3.175e-01	polymorphism_score=15.1	prediction=polymorphism	ref_cov=58/28	total_cov=58/68
RA	472	.	NC_000913	1634370	0	T	C	bias_e_value=2671370	bias_p_value=0.575521	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-4.4	fisher_strand_p_value=0.235139	frequency=6.000e-01	ks_quality_p_value=1	major_base=C	major_cov=24/3	major_frequency=6.000e-01	minor_base=T	minor_cov=13/5	new_cov=24/3	polymorphism_frequency=6.000e-01	polymorphism_score=50.3	prediction=polymorphism	ref_cov=13/5	total_cov=37/8
RA	473	.	NC_000913	1634382	0	T	C	bias_e_value=4227310	bias_p_value=0.910735	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=8.3	fisher_strand_p_value=0.659277	frequency=6.889e-01	ks_quality_p_value=0.922852	major_base=C	major_cov=27/4	major_frequency=6.889e-01	minor_base=T	minor_cov=11/3	new_cov=27/4	polymorphism_frequency=6.889e-01	polymorphism_score=37.3	prediction=polymorphism	ref_cov=11/3	total_cov=38/7
RA	474	.	NC_000913	1634388	0	T	G	bias_e_value=1432880	bias_p_value=0.308701	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=1.2	fisher_strand_p_value=0.156185	frequency=6.531e-01	ks_quality_p_value=0.581531	major_base=G	major_cov=27/5	major_frequency=6.531e-01	minor_base=T	minor_cov=11/6	new_cov=27/5	polymorphism_frequency=6.531e-01	polymorphism_score=47.0	prediction=polymorphism	ref_cov=11/6	total_cov=38/11
RA	475	.	NC_000913	1634404	0	A	G	bias_e_value=1593290	bias_p_value=0.343259	consensus_reject=SCORE_CUTOFF,FREQUENCY_CUTOFF	consensus_score=-1.4	fisher_strand_p_value=0.105716	frequency=6.364e-01	ks_quality_p_value=1	major_base=G	major_cov=29/6	major_frequency=6.364e-01	minor_base=A	minor_cov=12/8	new_cov=29/6	polymorphism_frequency=6.364e-01	polymorphism_score=49.7	prediction=polymorphism	ref_cov=12/8	total_cov=41/14
RA	476	.	NC_000913	1634482	0	T	C	bias_e_value=25830.7	bias_p_value=0.00556497	consensus_reject=FREQUENCY_CUTOFF	consensus_score=33.7	fisher_strand_p_value=0.000669788	frequency=5.323e-01	ks_quality_p_value=1	major_base=C	major_cov=56/10	major_frequency=5.323e-01	minor_base=T	minor_cov=33/25	new_cov=56/10	polymorphism_frequency=5.323e-01	polymorphism_score=169.0	prediction=polymorphism	ref_cov=33/25	total_cov=89/35
RA	477	.	NC_000913	1634484	0	G	T	bias_e_value=11423.4	bias_p_value=0.00246106	consensus_reject=FREQUENCY_CUTOFF	consensus_score=41.6	fisher_strand_p_value=0.000266649	frequency=5.242e-01	ks_quality_p_value=1	major_base=T	major_cov=56/9	major_frequency=5.242e-01	minor_base=G	minor_cov=33/26	new_cov=56/9	polymorphism_frequency=5.242e-01	polymorphism_score=193.4	prediction=polymorphism	ref_cov=33/26	total_cov=89/35
RA	478	.	NC_000913	1634569	0	A	T	bias_e_value=123969	bias_p_value=0.0267079	consensus_reject=FREQUENCY_CUTOFF	consensus_score=91.6	fisher_strand_p_value=0.0117843	frequency=5.000e-01	ks_quality_p_value=0.349018	major_base=A	major_cov=57/38	major_frequency=5.000e-01	minor_base=T	minor_cov=74/21	new_cov=74/21	polymorphism_frequency=5.000e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=57/38	total_cov=132/59
RA	479	.	NC_000913	1634571	0	C	T	bias_e_value=151246	bias_p_value=0.0325844	consensus_reject=FREQUENCY_CUTOFF	consensus_score=82.3	fisher_strand_p_value=0.0119827	frequency=4.974e-01	ks_quality_p_value=0.434546	major_base=C	major_cov=58/38	major_frequency=5.026e-01	minor_base=T	minor_cov=74/21	new_cov=74/21	polymorphism_frequency=4.974e-01	polymorphism_score=306.0	prediction=polymorphism	ref_cov=58/38	total_cov=132/59
RA	480	.	NC_000913	1634578	0	T	C	bias_e_value=67188.4	bias_p_value=0.0144751	consensus_reject=FREQUENCY_CUTOFF	consensus_score=81.1	fisher_strand_p_value=0.0640601	frequency=5.104e-01	ks_quality_p_value=0.031336	major_base=C	major_cov=73/25	major_frequency=5.104e-01	minor_base=T	minor_cov=58/36	new_cov=73/25	polymorphism_frequency=5.104e-01	polymorphism_score=290.4	prediction=polymorphism	ref_cov=58/36	total_cov=133/61
RA	481	.	NC_000913	1634597	0	C	A	bias_e_value=295860	bias_p_value=0.0637402	consensus_reject=FREQUENCY_CUTOFF	consensus_score=94.1	fisher_strand_p_value=0.0116992	frequency=4.951e-01	ks_quality_p_value=1	major_base=C	major_cov=60/43	major_frequency=5.049e-01	minor_base=A	minor_cov=76/25	new_cov=76/25	polymorphism_frequency=4.951e-01	polymorphism_score=297.6	prediction=polymorphism	ref_cov=60/43	total_cov=136/69
RA	482	.	NC_000913	1634658	0	A	G	bias_e_value=4641450	bias_p_value=0.999957	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.4	fisher_strand_p_value=1	frequency=4.742e-01	ks_quality_p_value=0.990745	major_base=A	major_cov=58/44	major_frequency=5.258e-01	minor_base=G	minor_cov=52/40	new_cov=52/40	polymorphism_frequency=4.742e-01	polymorphism_score=296.0	prediction=polymorphism	ref_cov=58/44	total_cov=110/85
RA	483	.	NC_000913	1634661	0	C	G	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=104.5	fisher_strand_p_value=1	frequency=4.792e-01	ks_quality_p_value=0.999113	major_base=C	major_cov=56/44	major_frequency=5.208e-01	minor_base=G	minor_cov=52/40	new_cov=52/40	polymorphism_frequency=4.792e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=56/44	total_cov=108/84
RA	484	.	NC_000913	1634676	0	A	G	bias_e_value=4605370	bias_p_value=0.992184	consensus_reject=FREQUENCY_CUTOFF	consensus_score=96.1	fisher_strand_p_value=0.882249	frequency=4.728e-01	ks_quality_p_value=0.994738	major_base=A	major_cov=53/44	major_frequency=5.272e-01	minor_base=G	minor_cov=49/38	new_cov=49/38	polymorphism_frequency=4.728e-01	polymorphism_score=269.9	prediction=polymorphism	ref_cov=53/44	total_cov=102/83
RA	485	.	NC_000913	1634699	0	A	C	bias_e_value=4499390	bias_p_value=0.969351	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.0	fisher_strand_p_value=0.762857	frequency=4.800e-01	ks_quality_p_value=1	major_base=A	major_cov=52/39	major_frequency=5.200e-01	minor_base=C	minor_cov=46/38	new_cov=46/38	polymorphism_frequency=4.800e-01	polymorphism_score=270.7	prediction=polymorphism	ref_cov=52/39	total_cov=98/77
RA	486	.	NC_000913	1634724	0	G	A	bias_e_value=2659860	bias_p_value=0.573042	consensus_reject=FREQUENCY_CUTOFF	consensus_score=62.0	fisher_strand_p_value=0.259751	frequency=4.968e-01	ks_quality_p_value=0.898672	major_base=G	major_cov=47/31	major_frequency=5.032e-01	minor_base=A	minor_cov=39/38	new_cov=39/38	polymorphism_frequency=4.968e-01	polymorphism_score=241.1	prediction=polymorphism	ref_cov=47/31	total_cov=89/69
RA	487	.	NC_000913	1634769	0	T	A	bias_e_value=2223930	bias_p_value=0.479126	consensus_reject=FREQUENCY_CUTOFF	consensus_score=78.0	fisher_strand_p_value=0.199032	frequency=4.508e-01	ks_quality_p_value=0.876683	major_base=T	major_cov=33/34	major_frequency=5.492e-01	minor_base=A	minor_cov=20/35	new_cov=20/35	polymorphism_frequency=4.508e-01	polymorphism_score=237.7	prediction=polymorphism	ref_cov=33/34	total_cov=53/69
RA	488	.	NC_000913	1634778	0	T	G	bias_e_value=2776290	bias_p_value=0.598125	consensus_reject=FREQUENCY_CUTOFF	consensus_score=83.6	fisher_strand_p_value=0.272761	frequency=4.228e-01	ks_quality_p_value=0.920663	major_base=T	major_cov=35/36	major_frequency=5.772e-01	minor_base=G	minor_cov=20/32	new_cov=20/32	polymorphism_frequency=4.228e-01	polymorphism_score=164.2	prediction=polymorphism	ref_cov=35/36	total_cov=55/68
RA	489	.	NC_000913	1634799	0	A	G	bias_e_value=1892730	bias_p_value=0.40777	consensus_reject=FREQUENCY_CUTOFF	consensus_score=99.0	fisher_strand_p_value=0.185499	frequency=4.052e-01	ks_quality_p_value=0.734337	major_base=A	major_cov=39/30	major_frequency=5.948e-01	minor_base=G	minor_cov=20/27	new_cov=20/27	polymorphism_frequency=4.052e-01	polymorphism_score=144.6	prediction=polymorphism	ref_cov=39/30	total_cov=59/57
RA	490	.	NC_000913	1635974	0	T	G	bias_e_value=1868030	bias_p_value=0.402449	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.9	fisher_strand_p_value=0.172642	frequency=2.252e-01	ks_quality_p_value=0.773637	major_base=T	major_cov=40/46	major_frequency=7.748e-01	minor_base=G	minor_cov=16/9	new_cov=16/9	polymorphism_frequency=2.252e-01	polymorphism_score=76.2	prediction=polymorphism	ref_cov=40/46	total_cov=56/56
RA	491	.	NC_000913	1636068	0	T	C	bias_e_value=2199750	bias_p_value=0.473914	consensus_reject=FREQUENCY_CUTOFF	consensus_score=229.6	fisher_strand_p_value=0.171517	frequency=2.273e-01	ks_quality_p_value=1	major_base=T	major_cov=39/46	major_frequency=7.727e-01	minor_base=C	minor_cov=16/9	new_cov=16/9	polymorphism_frequency=2.273e-01	polymorphism_score=63.2	prediction=polymorphism	ref_cov=39/46	total_cov=55/55
RA	492	.	NC_000913	1636074	0	C	T	bias_e_value=2208830	bias_p_value=0.475872	consensus_reject=FREQUENCY_CUTOFF	consensus_score=234.6	fisher_strand_p_value=0.172642	frequency=2.252e-01	ks_quality_p_value=0.999925	major_base=C	major_cov=40/46	major_frequency=7.748e-01	minor_base=T	minor_cov=16/9	new_cov=16/9	polymorphism_frequency=2.252e-01	polymorphism_score=63.2	prediction=polymorphism	ref_cov=40/46	total_cov=56/55
RA	493	.	NC_000913	1636128	0	C	T	bias_e_value=1986640	bias_p_value=0.428002	consensus_reject=FREQUENCY_CUTOFF	consensus_score=239.3	fisher_strand_p_value=0.149914	frequency=2.520e-01	ks_quality_p_value=0.977626	major_base=C	major_cov=45/47	major_frequency=7.480e-01	minor_base=T	minor_cov=20/11	new_cov=20/11	polymorphism_frequency=2.520e-01	polymorphism_score=80.2	prediction=polymorphism	ref_cov=45/47	total_cov=65/58
RA	494	.	NC_000913	1636145	0	T	C	bias_e_value=1969820	bias_p_value=0.424378	consensus_reject=FREQUENCY_CUTOFF	consensus_score=269.6	fisher_strand_p_value=0.144679	frequency=2.362e-01	ks_quality_p_value=1	major_base=T	major_cov=49/48	major_frequency=7.638e-01	minor_base=C	minor_cov=20/10	new_cov=20/10	polymorphism_frequency=2.362e-01	polymorphism_score=75.1	prediction=polymorphism	ref_cov=49/48	total_cov=69/58
RA	495	.	NC_000913	1636173	0	T	C	bias_e_value=1740460	bias_p_value=0.374966	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.1	fisher_strand_p_value=0.120252	frequency=2.281e-01	ks_quality_p_value=1	major_base=T	major_cov=45/43	major_frequency=7.719e-01	minor_base=C	minor_cov=18/8	new_cov=18/8	polymorphism_frequency=2.281e-01	polymorphism_score=62.1	prediction=polymorphism	ref_cov=45/43	total_cov=63/51
RA	496	.	NC_000913	1636382	0	C	A	bias_e_value=4180220	bias_p_value=0.900589	consensus_reject=FREQUENCY_CUTOFF	consensus_score=223.2	fisher_strand_p_value=0.588649	frequency=3.311e-01	ks_quality_p_value=1	major_base=C	major_cov=64/35	major_frequency=6.689e-01	minor_base=A	minor_cov=29/20	new_cov=29/20	polymorphism_frequency=3.311e-01	polymorphism_score=134.4	prediction=polymorphism	ref_cov=64/35	total_cov=93/55
RA	497	.	NC_000913	1636413	0	C	A	bias_e_value=2056070	bias_p_value=0.44296	consensus_reject=FREQUENCY_CUTOFF	consensus_score=196.2	fisher_strand_p_value=0.623623	frequency=3.626e-01	ks_quality_p_value=0.247678	major_base=C	major_cov=71/38	major_frequency=6.374e-01	minor_base=A	minor_cov=38/24	new_cov=38/24	polymorphism_frequency=3.626e-01	polymorphism_score=176.3	prediction=polymorphism	ref_cov=71/38	total_cov=109/62
RA	498	.	NC_000913	1636423	0	T	C	bias_e_value=3740460	bias_p_value=0.805847	consensus_reject=FREQUENCY_CUTOFF	consensus_score=163.2	fisher_strand_p_value=0.502136	frequency=3.765e-01	ks_quality_p_value=0.887541	major_base=T	major_cov=66/35	major_frequency=6.235e-01	minor_base=C	minor_cov=36/25	new_cov=36/25	polymorphism_frequency=3.765e-01	polymorphism_score=193.0	prediction=polymorphism	ref_cov=66/35	total_cov=102/60
RA	499	.	NC_000913	1636455	0	G	A	bias_e_value=493151	bias_p_value=0.106245	consensus_reject=FREQUENCY_CUTOFF	consensus_score=64.8	fisher_strand_p_value=0.0269897	frequency=4.656e-01	ks_quality_p_value=0.817817	major_base=G	major_cov=66/35	major_frequency=5.344e-01	minor_base=A	minor_cov=43/45	new_cov=43/45	polymorphism_frequency=4.656e-01	polymorphism_score=268.9	prediction=polymorphism	ref_cov=66/35	total_cov=109/82
RA	500	.	NC_000913	1636484	0	C	T	bias_e_value=1779250	bias_p_value=0.383322	consensus_reject=FREQUENCY_CUTOFF	consensus_score=70.9	fisher_strand_p_value=0.124228	frequency=4.806e-01	ks_quality_p_value=1	major_base=C	major_cov=63/44	major_frequency=5.194e-01	minor_base=T	minor_cov=47/52	new_cov=47/52	polymorphism_frequency=4.806e-01	polymorphism_score=296.9	prediction=polymorphism	ref_cov=63/44	total_cov=110/96
RA	501	.	NC_000913	1636503	0	T	C	bias_e_value=1578030	bias_p_value=0.339972	consensus_reject=FREQUENCY_CUTOFF	consensus_score=36.4	fisher_strand_p_value=0.106593	frequency=4.865e-01	ks_quality_p_value=0.97809	major_base=T	major_cov=66/48	major_frequency=5.135e-01	minor_base=C	minor_cov=50/58	new_cov=50/58	polymorphism_frequency=4.865e-01	polymorphism_score=inf	prediction=polymorphism	ref_cov=66/48	total_cov=116/106
RA	502	.	NC_000913	1652331	0	T	C	consensus_score=460.1	frequency=1	major_base=C	major_cov=62/57	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/57	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/57
RA	503	.	NC_000913	1653891	0	G	A	consensus_score=508.2	frequency=1	major_base=A	major_cov=64/75	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/75	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/75
RA	504	.	NC_000913	1667887	0	C	.	consensus_score=425.7	frequency=1	major_base=.	major_cov=48/35	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/35	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/35
RA	505	.	NC_000913	1681097	0	A	G	bias_e_value=4641650	bias_p_value=1	consensus_score=301.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=G	major_cov=39/42	major_frequency=9.878e-01	minor_base=T	minor_cov=0/1	new_cov=39/42	polymorphism_frequency=9.878e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/43
RA	506	.	NC_000913	1725356	0	C	T	consensus_score=304.9	frequency=1	major_base=T	major_cov=37/49	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/49	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/49
RA	507	.	NC_000913	1740808	0	C	T	consensus_score=309.8	frequency=1	major_base=T	major_cov=40/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/48
RA	508	.	NC_000913	1743284	0	C	T	bias_e_value=1161250	bias_p_value=0.250179	consensus_score=352.5	fisher_strand_p_value=0.067769	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=61/40	major_frequency=9.712e-01	minor_base=G	minor_cov=0/3	new_cov=61/40	polymorphism_frequency=9.712e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/43
RA	509	.	NC_000913	1744751	0	C	.	consensus_score=530.0	frequency=1	major_base=.	major_cov=63/38	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/38	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/38
RA	510	.	NC_000913	1748302	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=400.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=56/56	major_frequency=9.912e-01	minor_base=G	minor_cov=0/1	new_cov=56/56	polymorphism_frequency=9.912e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/57
RA	511	.	NC_000913	1756353	0	C	A	bias_e_value=2.3977	bias_p_value=5.16562e-07	consensus_reject=FREQUENCY_CUTOFF	consensus_score=212.7	fisher_strand_p_value=2.80927e-08	frequency=2.542e-01	ks_quality_p_value=1	major_base=C	major_cov=42/46	major_frequency=7.458e-01	minor_base=A	minor_cov=30/0	new_cov=30/0	polymorphism_frequency=2.542e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=42/46	total_cov=72/46
RA	512	.	NC_000913	1787811	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=280.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/38	major_frequency=9.877e-01	minor_base=C	minor_cov=1/0	new_cov=42/38	polymorphism_frequency=9.877e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=43/38
RA	513	.	NC_000913	1793615	0	A	G	consensus_score=409.3	frequency=1	major_base=G	major_cov=63/42	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/42	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/42
RA	514	.	NC_000913	1897640	0	C	T	consensus_score=294.2	frequency=1	major_base=T	major_cov=36/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/44
RA	515	.	NC_000913	1902613	0	C	A	bias_e_value=0.288257	bias_p_value=6.21022e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=274.7	fisher_strand_p_value=3.01163e-09	frequency=2.049e-01	ks_quality_p_value=1	major_base=C	major_cov=37/60	major_frequency=7.951e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.049e-01	polymorphism_score=13.4	prediction=polymorphism	ref_cov=37/60	total_cov=62/60
RA	516	.	NC_000913	1913130	0	C	T	consensus_score=416.2	frequency=1	major_base=T	major_cov=47/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=47/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/69
RA	517	.	NC_000913	1922815	0	C	A	bias_e_value=19398	bias_p_value=0.00417911	consensus_reject=FREQUENCY_CUTOFF	consensus_score=200.0	fisher_strand_p_value=0.000484069	frequency=2.804e-01	ks_quality_p_value=1	major_base=C	major_cov=27/50	major_frequency=7.196e-01	minor_base=A	minor_cov=22/8	new_cov=22/8	polymorphism_frequency=2.804e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=27/50	total_cov=49/58
RA	518	.	NC_000913	1978243	0	G	T	consensus_score=461.4	frequency=1	major_base=T	major_cov=63/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=63/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/67
RA	519	.	NC_000913	2003264	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=474.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/85	major_frequency=9.926e-01	minor_base=G	minor_cov=0/1	new_cov=49/85	polymorphism_frequency=9.926e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/86
RA	520	.	NC_000913	2013023	0	C	A	bias_e_value=690.967	bias_p_value=0.000148862	consensus_reject=FREQUENCY_CUTOFF	consensus_score=176.0	fisher_strand_p_value=1.2079e-05	frequency=2.577e-01	ks_quality_p_value=1	major_base=C	major_cov=41/31	major_frequency=7.423e-01	minor_base=A	minor_cov=25/0	new_cov=25/0	polymorphism_frequency=2.577e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=41/31	total_cov=66/31
RA	521	.	NC_000913	2027528	0	C	T	bias_e_value=3860500	bias_p_value=0.831709	consensus_score=360.0	fisher_strand_p_value=0.479592	frequency=1	ks_quality_p_value=0.999159	major_base=T	major_cov=51/46	major_frequency=9.898e-01	minor_base=G	minor_cov=0/1	new_cov=51/46	polymorphism_frequency=9.898e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/47
RA	522	.	NC_000913	2032423	0	G	A	consensus_score=407.3	frequency=1	major_base=A	major_cov=52/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/60
RA	523	.	NC_000913	2105655	0	G	T	bias_e_value=0.27135	bias_p_value=5.84599e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=306.0	fisher_strand_p_value=2.82629e-09	frequency=2.027e-01	ks_quality_p_value=1	major_base=G	major_cov=64/54	major_frequency=7.973e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.027e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=64/54	total_cov=64/84
RA	524	.	NC_000913	2173363	0	C	.	bias_e_value=4638970	bias_p_value=0.999422	consensus_score=464.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.966185	major_base=.	major_cov=46/45	major_frequency=9.891e-01	minor_base=C	minor_cov=0/1	new_cov=46/45	polymorphism_frequency=9.891e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=0/1	total_cov=46/46
RA	525	.	NC_000913	2173364	0	C	.	bias_e_value=4638970	bias_p_value=0.999422	consensus_score=464.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.966185	major_base=.	major_cov=46/45	major_frequency=9.891e-01	minor_base=C	minor_cov=0/1	new_cov=46/45	polymorphism_frequency=9.891e-01	polymorphism_score=-1.4	prediction=consensus	ref_cov=0/1	total_cov=46/46
RA	526	.	NC_000913	2185851	0	G	T	bias_e_value=1.43941e-08	bias_p_value=3.10108e-15	consensus_reject=FREQUENCY_CUTOFF	consensus_score=317.6	fisher_strand_p_value=8.1509e-17	frequency=2.770e-01	ks_quality_p_value=1	major_base=G	major_cov=75/32	major_frequency=7.230e-01	minor_base=T	minor_cov=0/41	new_cov=0/41	polymorphism_frequency=2.770e-01	polymorphism_score=15.0	prediction=polymorphism	ref_cov=75/32	total_cov=75/74
RA	527	.	NC_000913	2242121	0	A	G	consensus_score=370.7	frequency=1	major_base=G	major_cov=37/59	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=37/59	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=37/59
RA	528	.	NC_000913	2288418	0	G	T	bias_e_value=0.0136028	bias_p_value=2.9306e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=255.1	fisher_strand_p_value=1.23039e-10	frequency=2.800e-01	ks_quality_p_value=1	major_base=G	major_cov=54/54	major_frequency=7.200e-01	minor_base=T	minor_cov=0/42	new_cov=0/42	polymorphism_frequency=2.800e-01	polymorphism_score=13.6	prediction=polymorphism	ref_cov=54/54	total_cov=54/96
RA	529	.	NC_000913	2334979	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=458.3	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=66/58	major_frequency=9.920e-01	minor_base=C	minor_cov=1/0	new_cov=66/58	polymorphism_frequency=9.920e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=67/58
RA	530	.	NC_000913	2365840	0	T	G	bias_e_value=0.00109785	bias_p_value=2.36522e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=235.1	fisher_strand_p_value=8.94567e-12	frequency=3.095e-01	ks_quality_p_value=1	major_base=T	major_cov=55/61	major_frequency=6.905e-01	minor_base=G	minor_cov=0/52	new_cov=0/52	polymorphism_frequency=3.095e-01	polymorphism_score=17.1	prediction=polymorphism	ref_cov=55/61	total_cov=55/113
RA	531	.	NC_000913	2365865	0	T	G	bias_e_value=338.253	bias_p_value=7.28734e-05	consensus_reject=FREQUENCY_CUTOFF	consensus_score=277.1	fisher_strand_p_value=5.56313e-06	frequency=2.012e-01	ks_quality_p_value=1	major_base=T	major_cov=47/84	major_frequency=7.988e-01	minor_base=G	minor_cov=0/33	new_cov=0/33	polymorphism_frequency=2.012e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=47/84	total_cov=47/117
RA	532	.	NC_000913	2397444	0	G	A	bias_e_value=4113080	bias_p_value=0.886125	consensus_score=324.1	fisher_strand_p_value=0.56247	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/54	major_frequency=9.674e-01	minor_base=G	minor_cov=2/1	new_cov=35/54	polymorphism_frequency=9.674e-01	polymorphism_score=-4.0	prediction=consensus	ref_cov=2/1	total_cov=39/55
RA	533	.	NC_000913	2411201	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=371.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=50/58	major_frequency=9.908e-01	minor_base=G	minor_cov=0/1	new_cov=50/58	polymorphism_frequency=9.908e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/59
RA	534	.	NC_000913	2477258	0	G	A	bias_e_value=0.00520919	bias_p_value=1.12227e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=227.6	fisher_strand_p_value=4.52173e-11	frequency=2.389e-01	ks_quality_p_value=1	major_base=G	major_cov=28/58	major_frequency=7.611e-01	minor_base=A	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.389e-01	polymorphism_score=17.9	prediction=polymorphism	ref_cov=28/58	total_cov=56/58
RA	535	.	NC_000913	2477264	0	T	C	bias_e_value=1.27182e-05	bias_p_value=2.74001e-12	consensus_reject=FREQUENCY_CUTOFF	consensus_score=206.8	fisher_strand_p_value=8.82196e-14	frequency=2.982e-01	ks_quality_p_value=1	major_base=T	major_cov=23/57	major_frequency=7.018e-01	minor_base=C	minor_cov=34/0	new_cov=34/0	polymorphism_frequency=2.982e-01	polymorphism_score=27.2	prediction=polymorphism	ref_cov=23/57	total_cov=57/57
RA	536	.	NC_000913	2477265	0	A	C	bias_e_value=6.29353e-11	bias_p_value=1.35588e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=159.6	fisher_strand_p_value=3.10876e-19	frequency=3.805e-01	ks_quality_p_value=1	major_base=A	major_cov=14/56	major_frequency=6.195e-01	minor_base=C	minor_cov=43/0	new_cov=43/0	polymorphism_frequency=3.805e-01	polymorphism_score=44.3	prediction=polymorphism	ref_cov=14/56	total_cov=57/56
RA	537	.	NC_000913	2477267	0	T	C	bias_e_value=0.00453334	bias_p_value=9.76664e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=251.2	fisher_strand_p_value=3.91224e-11	frequency=2.328e-01	ks_quality_p_value=1	major_base=T	major_cov=29/60	major_frequency=7.672e-01	minor_base=C	minor_cov=27/0	new_cov=27/0	polymorphism_frequency=2.328e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=29/60	total_cov=57/60
RA	538	.	NC_000913	2490240	0	G	T	bias_e_value=0.276766	bias_p_value=5.96266e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=278.7	fisher_strand_p_value=2.8856e-09	frequency=2.483e-01	ks_quality_p_value=1	major_base=G	major_cov=54/55	major_frequency=7.517e-01	minor_base=T	minor_cov=0/36	new_cov=0/36	polymorphism_frequency=2.483e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=54/55	total_cov=54/91
RA	539	.	NC_000913	2503238	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=387.4	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=42/67	major_frequency=9.909e-01	minor_base=G	minor_cov=0/1	new_cov=42/67	polymorphism_frequency=9.909e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/68
RA	540	.	NC_000913	2508109	0	C	T	consensus_score=406.6	frequency=1	major_base=T	major_cov=56/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/54
RA	541	.	NC_000913	2767445	0	C	A	bias_e_value=2.83146e-07	bias_p_value=6.10011e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=224.5	fisher_strand_p_value=1.74375e-15	frequency=3.069e-01	ks_quality_p_value=1	major_base=C	major_cov=14/56	major_frequency=6.931e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=3.069e-01	polymorphism_score=10.3	prediction=polymorphism	ref_cov=14/56	total_cov=46/56
RA	542	.	NC_000913	2843801	0	G	T	bias_e_value=40.7248	bias_p_value=8.77377e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=135.8	fisher_strand_p_value=5.70593e-07	frequency=2.683e-01	ks_quality_p_value=1	major_base=G	major_cov=34/26	major_frequency=7.317e-01	minor_base=T	minor_cov=0/22	new_cov=0/22	polymorphism_frequency=2.683e-01	polymorphism_score=11.2	prediction=polymorphism	ref_cov=34/26	total_cov=34/48
RA	543	.	NC_000913	2879575	0	G	A	consensus_score=406.0	frequency=1	major_base=A	major_cov=41/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=41/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=41/68
RA	544	.	NC_000913	2882303	0	G	A	bias_e_value=3856240	bias_p_value=0.83079	consensus_score=473.8	fisher_strand_p_value=0.477941	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=64/71	major_frequency=9.926e-01	minor_base=C	minor_cov=1/0	new_cov=64/71	polymorphism_frequency=9.926e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/71
RA	545	.	NC_000913	2893879	0	G	A	bias_e_value=3863270	bias_p_value=0.832305	consensus_score=274.6	fisher_strand_p_value=0.48	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/39	major_frequency=9.867e-01	minor_base=G	minor_cov=1/0	new_cov=35/39	polymorphism_frequency=9.867e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=36/39
RA	546	.	NC_000913	2895088	0	G	A	consensus_score=445.4	frequency=1	major_base=A	major_cov=56/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/66
RA	547	.	NC_000913	2895349	0	G	T	bias_e_value=4.688	bias_p_value=1.00999e-06	consensus_reject=FREQUENCY_CUTOFF	consensus_score=168.2	fisher_strand_p_value=5.71327e-08	frequency=2.527e-01	ks_quality_p_value=1	major_base=G	major_cov=41/27	major_frequency=7.473e-01	minor_base=T	minor_cov=0/23	new_cov=0/23	polymorphism_frequency=2.527e-01	polymorphism_score=11.6	prediction=polymorphism	ref_cov=41/27	total_cov=42/50
RA	548	.	NC_000913	2897361	0	G	A	consensus_score=259.4	frequency=1	major_base=A	major_cov=42/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/30
RA	549	.	NC_000913	2903157	0	G	A	consensus_score=485.1	frequency=1	major_base=A	major_cov=80/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=80/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=80/53
RA	550	.	NC_000913	2904227	0	G	A	consensus_score=401.6	frequency=1	major_base=A	major_cov=66/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/43
RA	551	.	NC_000913	2906581	0	T	C	consensus_score=494.5	frequency=1	major_base=C	major_cov=40/91	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=40/91	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=40/91
RA	552	.	NC_000913	2912327	0	G	A	bias_e_value=3520480	bias_p_value=0.758453	consensus_score=414.2	fisher_strand_p_value=0.391304	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/70	major_frequency=9.913e-01	minor_base=C	minor_cov=1/0	new_cov=44/70	polymorphism_frequency=9.913e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/70
RA	553	.	NC_000913	2913085	0	G	T	bias_e_value=0.0479638	bias_p_value=1.03333e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=219.8	fisher_strand_p_value=4.5923e-10	frequency=2.703e-01	ks_quality_p_value=1	major_base=G	major_cov=49/32	major_frequency=7.297e-01	minor_base=T	minor_cov=0/30	new_cov=0/30	polymorphism_frequency=2.703e-01	polymorphism_score=10.7	prediction=polymorphism	ref_cov=49/32	total_cov=49/62
RA	554	.	NC_000913	2914286	0	G	A	bias_e_value=3740000	bias_p_value=0.805749	consensus_score=373.4	fisher_strand_p_value=0.445545	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=44/56	major_frequency=9.901e-01	minor_base=C	minor_cov=1/0	new_cov=44/56	polymorphism_frequency=9.901e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/56
RA	555	.	NC_000913	2916130	0	G	A	consensus_score=495.7	frequency=1	major_base=A	major_cov=72/67	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=72/67	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=72/67
RA	556	.	NC_000913	2924151	0	G	A	consensus_score=367.8	frequency=1	major_base=A	major_cov=45/52	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/52	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/52
RA	557	.	NC_000913	2934637	0	G	A	bias_e_value=3908130	bias_p_value=0.84197	consensus_score=553.2	fisher_strand_p_value=0.493421	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=74/77	major_frequency=9.934e-01	minor_base=C	minor_cov=1/0	new_cov=74/77	polymorphism_frequency=9.934e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=75/78
RA	558	.	NC_000913	2934884	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=470.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=63/64	major_frequency=9.922e-01	minor_base=G	minor_cov=0/1	new_cov=63/64	polymorphism_frequency=9.922e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/65
RA	559	.	NC_000913	2936128	0	G	A	consensus_score=360.9	frequency=1	major_base=A	major_cov=52/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/47
RA	560	.	NC_000913	2971741	0	G	A	consensus_score=457.8	frequency=1	major_base=A	major_cov=62/62	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=62/62	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=62/62
RA	561	.	NC_000913	2973673	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=453.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=63/62	major_frequency=9.921e-01	minor_base=C	minor_cov=1/0	new_cov=63/62	polymorphism_frequency=9.921e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/62
RA	562	.	NC_000913	2990480	0	C	A	bias_e_value=0.00086916	bias_p_value=1.87252e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=352.2	fisher_strand_p_value=7.01778e-12	frequency=2.562e-01	ks_quality_p_value=1	major_base=C	major_cov=82/69	major_frequency=7.438e-01	minor_base=A	minor_cov=52/0	new_cov=52/0	polymorphism_frequency=2.562e-01	polymorphism_score=23.5	prediction=polymorphism	ref_cov=82/69	total_cov=134/69
RA	563	.	NC_000913	3053309	0	C	T	consensus_score=376.9	frequency=1	major_base=T	major_cov=71/30	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=71/30	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=71/30
RA	564	.	NC_000913	3054886	0	G	T	bias_e_value=6.02267e-12	bias_p_value=1.29753e-18	consensus_reject=FREQUENCY_CUTOFF	consensus_score=105.3	fisher_strand_p_value=2.81979e-20	frequency=4.324e-01	ks_quality_p_value=1	major_base=G	major_cov=12/51	major_frequency=5.676e-01	minor_base=T	minor_cov=48/0	new_cov=48/0	polymorphism_frequency=4.324e-01	polymorphism_score=64.3	prediction=polymorphism	ref_cov=12/51	total_cov=61/51
RA	565	.	NC_000913	3054888	0	A	C	bias_e_value=2.435e-09	bias_p_value=5.24598e-16	consensus_reject=FREQUENCY_CUTOFF	consensus_score=165.3	fisher_strand_p_value=1.31579e-17	frequency=3.889e-01	ks_quality_p_value=1	major_base=A	major_cov=15/51	major_frequency=6.111e-01	minor_base=C	minor_cov=42/0	new_cov=42/0	polymorphism_frequency=3.889e-01	polymorphism_score=14.3	prediction=polymorphism	ref_cov=15/51	total_cov=61/51
RA	566	.	NC_000913	3054894	0	G	T	bias_e_value=3.00168e-06	bias_p_value=6.46684e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=102.7	fisher_strand_p_value=1.98676e-14	frequency=4.128e-01	ks_quality_p_value=1	major_base=G	major_cov=16/48	major_frequency=5.872e-01	minor_base=T	minor_cov=43/2	new_cov=43/2	polymorphism_frequency=4.128e-01	polymorphism_score=49.5	prediction=polymorphism	ref_cov=16/48	total_cov=60/50
RA	567	.	NC_000913	3054937	0	G	A	bias_e_value=0.00073845	bias_p_value=1.59092e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=226.4	fisher_strand_p_value=5.9248e-12	frequency=3.182e-01	ks_quality_p_value=1	major_base=G	major_cov=27/48	major_frequency=6.818e-01	minor_base=A	minor_cov=35/0	new_cov=35/0	polymorphism_frequency=3.182e-01	polymorphism_score=13.0	prediction=polymorphism	ref_cov=27/48	total_cov=62/48
RA	568	.	NC_000913	3054949	0	G	A	bias_e_value=0.00958968	bias_p_value=2.066e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=225.4	fisher_strand_p_value=8.5431e-11	frequency=2.952e-01	ks_quality_p_value=1	major_base=G	major_cov=27/47	major_frequency=7.048e-01	minor_base=A	minor_cov=31/0	new_cov=31/0	polymorphism_frequency=2.952e-01	polymorphism_score=10.2	prediction=polymorphism	ref_cov=27/47	total_cov=58/47
RA	569	.	NC_000913	3077992	0	C	T	consensus_score=437.3	frequency=1	major_base=T	major_cov=57/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/66
RA	570	.	NC_000913	3226224	0	G	T	bias_e_value=0.000481913	bias_p_value=1.03824e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=243.9	fisher_strand_p_value=3.80376e-12	frequency=3.077e-01	ks_quality_p_value=1	major_base=G	major_cov=54/45	major_frequency=6.923e-01	minor_base=T	minor_cov=0/44	new_cov=0/44	polymorphism_frequency=3.077e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=54/45	total_cov=54/89
RA	571	.	NC_000913	3268970	0	A	G	consensus_score=806.2	frequency=1	major_base=G	major_cov=104/105	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=104/105	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=104/105
RA	572	.	NC_000913	3372976	0	C	T	consensus_score=423.0	frequency=1	major_base=T	major_cov=51/64	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/64	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/64
RA	573	.	NC_000913	3379020	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=421.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=52/67	major_frequency=9.917e-01	minor_base=G	minor_cov=0/1	new_cov=52/67	polymorphism_frequency=9.917e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=53/68
RA	574	.	NC_000913	3379029	0	C	T	consensus_score=431.8	frequency=1	major_base=T	major_cov=52/69	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/69	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/69
RA	575	.	NC_000913	3388093	0	C	T	consensus_score=356.1	frequency=1	major_base=T	major_cov=52/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=52/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=52/55
RA	576	.	NC_000913	3390801	0	C	T	consensus_score=436.0	frequency=1	major_base=T	major_cov=43/85	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=43/85	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/85
RA	577	.	NC_000913	3418436	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=638.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.999932	major_base=A	major_cov=60/111	major_frequency=9.942e-01	minor_base=G	minor_cov=0/1	new_cov=60/111	polymorphism_frequency=9.942e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=60/112
RA	578	.	NC_000913	3449312	0	G	A	bias_e_value=3539090	bias_p_value=0.762464	consensus_score=330.7	fisher_strand_p_value=0.395604	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=35/55	major_frequency=9.890e-01	minor_base=C	minor_cov=1/0	new_cov=35/55	polymorphism_frequency=9.890e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/55
RA	579	.	NC_000913	3457256	0	G	A	bias_e_value=3669980	bias_p_value=0.790663	consensus_score=437.8	fisher_strand_p_value=0.42735	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=49/67	major_frequency=9.915e-01	minor_base=C	minor_cov=1/0	new_cov=49/67	polymorphism_frequency=9.915e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=50/67
RA	580	.	NC_000913	3459202	0	G	A	consensus_score=326.3	frequency=1	major_base=A	major_cov=45/43	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/43	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/43
RA	581	.	NC_000913	3459451	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=301.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=53/32	major_frequency=9.884e-01	minor_base=C	minor_cov=1/0	new_cov=53/32	polymorphism_frequency=9.884e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/32
RA	582	.	NC_000913	3473834	0	G	A	consensus_score=479.6	frequency=1	major_base=A	major_cov=64/68	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=64/68	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/68
RA	583	.	NC_000913	3486205	0	C	A	consensus_score=351.1	frequency=1	major_base=A	major_cov=53/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/44
RA	584	.	NC_000913	3488895	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=382.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=41/61	major_frequency=9.903e-01	minor_base=G	minor_cov=0/1	new_cov=41/61	polymorphism_frequency=9.903e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=0/1	total_cov=41/62
RA	585	.	NC_000913	3489454	0	G	A	consensus_score=375.5	frequency=1	major_base=A	major_cov=54/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/47
RA	586	.	NC_000913	3492899	0	G	A	consensus_score=399.1	frequency=1	major_base=A	major_cov=57/55	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/55	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/55
RA	587	.	NC_000913	3505067	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=344.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=46/46	major_frequency=9.892e-01	minor_base=C	minor_cov=1/0	new_cov=46/46	polymorphism_frequency=9.892e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=47/46
RA	588	.	NC_000913	3507237	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=442.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=75/51	major_frequency=9.921e-01	minor_base=C	minor_cov=1/0	new_cov=75/51	polymorphism_frequency=9.921e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=76/52
RA	589	.	NC_000913	3525367	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=398.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=62/48	major_frequency=9.910e-01	minor_base=C	minor_cov=1/0	new_cov=62/48	polymorphism_frequency=9.910e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=63/48
RA	590	.	NC_000913	3543220	0	A	C	bias_e_value=0.00231806	bias_p_value=4.99405e-10	consensus_reject=FREQUENCY_CUTOFF	consensus_score=260.9	fisher_strand_p_value=1.94604e-11	frequency=2.887e-01	ks_quality_p_value=1	major_base=A	major_cov=46/55	major_frequency=7.113e-01	minor_base=C	minor_cov=41/0	new_cov=41/0	polymorphism_frequency=2.887e-01	polymorphism_score=11.0	prediction=polymorphism	ref_cov=46/55	total_cov=87/55
RA	591	.	NC_000913	3560455	1	.	G	consensus_score=457.3	frequency=1	major_base=G	major_cov=56/66	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=56/66	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=56/66
RA	592	.	NC_000913	3596252	0	C	T	consensus_score=450.4	frequency=1	major_base=T	major_cov=66/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/60
RA	593	.	NC_000913	3602706	0	C	A	bias_e_value=53077.1	bias_p_value=0.0114349	consensus_reject=FREQUENCY_CUTOFF	consensus_score=148.1	fisher_strand_p_value=0.00152796	frequency=2.500e-01	ks_quality_p_value=1	major_base=C	major_cov=31/32	major_frequency=7.500e-01	minor_base=A	minor_cov=2/19	new_cov=2/19	polymorphism_frequency=2.500e-01	polymorphism_score=23.9	prediction=polymorphism	ref_cov=31/32	total_cov=33/51
RA	594	.	NC_000913	3741871	0	G	T	bias_e_value=7.63034e-05	bias_p_value=1.64389e-11	consensus_reject=FREQUENCY_CUTOFF	consensus_score=278.2	fisher_strand_p_value=5.62864e-13	frequency=2.714e-01	ks_quality_p_value=1	major_base=G	major_cov=63/39	major_frequency=7.286e-01	minor_base=T	minor_cov=0/38	new_cov=0/38	polymorphism_frequency=2.714e-01	polymorphism_score=13.9	prediction=polymorphism	ref_cov=63/39	total_cov=64/77
RA	595	.	NC_000913	3768435	0	C	A	bias_e_value=5.2543e-11	bias_p_value=1.13199e-17	consensus_reject=FREQUENCY_CUTOFF	consensus_score=481.4	fisher_strand_p_value=2.58448e-19	frequency=2.489e-01	ks_quality_p_value=1	major_base=C	major_cov=69/106	major_frequency=7.511e-01	minor_base=A	minor_cov=58/0	new_cov=58/0	polymorphism_frequency=2.489e-01	polymorphism_score=28.8	prediction=polymorphism	ref_cov=69/106	total_cov=127/106
RA	596	.	NC_000913	3848662	0	C	T	consensus_score=325.0	frequency=1	major_base=T	major_cov=45/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/45
RA	597	.	NC_000913	3876963	0	G	A	bias_e_value=1153830	bias_p_value=0.248582	consensus_score=296.0	fisher_strand_p_value=0.0671763	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=54/35	major_frequency=9.674e-01	minor_base=G	minor_cov=0/3	new_cov=54/35	polymorphism_frequency=9.674e-01	polymorphism_score=-4.4	prediction=consensus	ref_cov=0/3	total_cov=55/38
RA	598	.	NC_000913	3900305	0	C	T	bias_e_value=4641370	bias_p_value=0.99994	consensus_score=440.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.989086	major_base=T	major_cov=65/56	major_frequency=9.918e-01	minor_base=G	minor_cov=1/0	new_cov=65/56	polymorphism_frequency=9.918e-01	polymorphism_score=-4.6	prediction=consensus	ref_cov=0/0	total_cov=66/56
RA	599	.	NC_000913	3910206	0	G	A	consensus_score=545.4	frequency=1	major_base=A	major_cov=74/74	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=74/74	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=74/74
RA	600	.	NC_000913	3911533	0	C	A	bias_e_value=0.00982121	bias_p_value=2.11589e-09	consensus_reject=FREQUENCY_CUTOFF	consensus_score=204.5	fisher_strand_p_value=8.75838e-11	frequency=3.169e-01	ks_quality_p_value=1	major_base=C	major_cov=49/48	major_frequency=6.831e-01	minor_base=A	minor_cov=45/0	new_cov=45/0	polymorphism_frequency=3.169e-01	polymorphism_score=19.8	prediction=polymorphism	ref_cov=49/48	total_cov=94/48
RA	601	.	NC_000913	3969324	0	C	T	consensus_score=524.0	frequency=1	major_base=T	major_cov=57/84	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/84	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/84
RA	602	.	NC_000913	4014010	0	G	A	consensus_score=442.9	frequency=1	major_base=A	major_cov=53/71	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=53/71	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=53/71
RA	603	.	NC_000913	4111882	0	G	A	bias_e_value=4641650	bias_p_value=1	consensus_score=496.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=84/59	major_frequency=9.931e-01	minor_base=C	minor_cov=1/0	new_cov=84/59	polymorphism_frequency=9.931e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=85/59
RA	604	.	NC_000913	4136467	0	A	C	bias_e_value=0.110283	bias_p_value=2.37595e-08	consensus_reject=FREQUENCY_CUTOFF	consensus_score=116.7	fisher_strand_p_value=1.09848e-09	frequency=3.718e-01	ks_quality_p_value=1	major_base=A	major_cov=17/32	major_frequency=6.282e-01	minor_base=C	minor_cov=29/0	new_cov=29/0	polymorphism_frequency=3.718e-01	polymorphism_score=28.4	prediction=polymorphism	ref_cov=17/32	total_cov=49/32
RA	605	.	NC_000913	4146389	1	.	T	bias_e_value=4641230	bias_p_value=0.999909	consensus_score=305.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.986568	major_base=T	major_cov=49/36	major_frequency=9.770e-01	minor_base=.	minor_cov=1/1	new_cov=49/36	polymorphism_frequency=9.770e-01	polymorphism_score=0.7	prediction=consensus	ref_cov=1/1	total_cov=50/37
RA	606	.	NC_000913	4160157	0	G	A	consensus_score=404.9	frequency=1	major_base=A	major_cov=73/41	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=73/41	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=73/41
RA	607	.	NC_000913	4163310	0	G	A	consensus_score=393.3	frequency=1	major_base=A	major_cov=57/50	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=57/50	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=57/50
RA	608	.	NC_000913	4212954	0	C	T	consensus_score=171.6	frequency=1	major_base=T	major_cov=39/16	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=39/16	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=39/16
RA	609	.	NC_000913	4213310	0	G	T	bias_e_value=3.49147e-07	bias_p_value=7.52204e-14	consensus_reject=FREQUENCY_CUTOFF	consensus_score=236.9	fisher_strand_p_value=2.16355e-15	frequency=3.206e-01	ks_quality_p_value=1	major_base=G	major_cov=60/29	major_frequency=6.794e-01	minor_base=T	minor_cov=0/42	new_cov=0/42	polymorphism_frequency=3.206e-01	polymorphism_score=16.0	prediction=polymorphism	ref_cov=60/29	total_cov=60/71
RA	610	.	NC_000913	4220155	0	C	T	bias_e_value=2098170	bias_p_value=0.45203	consensus_score=437.6	fisher_strand_p_value=0.159355	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/76	major_frequency=9.843e-01	minor_base=C	minor_cov=2/0	new_cov=49/76	polymorphism_frequency=9.843e-01	polymorphism_score=NA	prediction=consensus	ref_cov=2/0	total_cov=51/76
RA	611	.	NC_000913	4222312	0	C	T	bias_e_value=3885170	bias_p_value=0.837022	consensus_score=660.3	fisher_strand_p_value=0.486486	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=89/95	major_frequency=9.946e-01	minor_base=C	minor_cov=1/0	new_cov=89/95	polymorphism_frequency=9.946e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=90/95
RA	612	.	NC_000913	4234996	0	C	T	consensus_score=369.5	frequency=1	major_base=T	major_cov=58/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=58/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=58/44
RA	613	.	NC_000913	4235064	0	C	T	consensus_score=391.2	frequency=1	major_base=T	major_cov=55/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=55/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=55/53
RA	614	.	NC_000913	4235852	0	C	T	consensus_score=449.2	frequency=1	major_base=T	major_cov=35/99	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=35/99	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=35/99
RA	615	.	NC_000913	4236311	0	C	T	consensus_score=178.3	frequency=1	major_base=T	major_cov=33/19	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=33/19	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=33/19
RA	616	.	NC_000913	4239622	0	C	T	consensus_score=422.7	frequency=1	major_base=T	major_cov=65/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=65/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=65/48
RA	617	.	NC_000913	4242544	0	C	T	bias_e_value=3632930	bias_p_value=0.782679	consensus_score=634.1	fisher_strand_p_value=0.418079	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=73/103	major_frequency=9.944e-01	minor_base=C	minor_cov=1/0	new_cov=73/103	polymorphism_frequency=9.944e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=74/103
RA	618	.	NC_000913	4242917	0	C	T	consensus_score=303.0	frequency=1	major_base=T	major_cov=36/47	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=36/47	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=36/47
RA	619	.	NC_000913	4247839	0	C	T	consensus_score=377.1	frequency=1	major_base=T	major_cov=51/53	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=51/53	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=51/53
RA	620	.	NC_000913	4257828	0	C	T	bias_e_value=3398420	bias_p_value=0.732157	consensus_score=358.7	fisher_strand_p_value=0.365385	frequency=1	ks_quality_p_value=0.997017	major_base=T	major_cov=37/66	major_frequency=9.904e-01	minor_base=C	minor_cov=1/0	new_cov=37/66	polymorphism_frequency=9.904e-01	polymorphism_score=-6.2	prediction=consensus	ref_cov=1/0	total_cov=38/66
RA	621	.	NC_000913	4259147	0	C	T	consensus_score=494.9	frequency=1	major_base=T	major_cov=80/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=80/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=80/54
RA	622	.	NC_000913	4267910	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=386.2	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=61/46	major_frequency=9.907e-01	minor_base=C	minor_cov=1/0	new_cov=61/46	polymorphism_frequency=9.907e-01	polymorphism_score=NA	prediction=consensus	ref_cov=1/0	total_cov=62/46
RA	623	.	NC_000913	4276985	0	G	A	bias_e_value=3714640	bias_p_value=0.800285	consensus_score=503.2	fisher_strand_p_value=0.438849	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=60/78	major_frequency=9.928e-01	minor_base=C	minor_cov=1/0	new_cov=60/78	polymorphism_frequency=9.928e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=61/78
RA	624	.	NC_000913	4296191	0	A	C	bias_e_value=607165	bias_p_value=0.130808	consensus_reject=FREQUENCY_CUTOFF	consensus_score=51.6	fisher_strand_p_value=0.0287558	frequency=2.222e-01	ks_quality_p_value=1	major_base=A	major_cov=17/18	major_frequency=7.778e-01	minor_base=C	minor_cov=9/1	new_cov=9/1	polymorphism_frequency=2.222e-01	polymorphism_score=17.1	prediction=polymorphism	ref_cov=17/18	total_cov=26/19
RA	625	.	NC_000913	4296268	0	T	C	bias_e_value=4641650	bias_p_value=1	consensus_reject=FREQUENCY_CUTOFF	consensus_score=71.7	fisher_strand_p_value=1	frequency=2.963e-01	ks_quality_p_value=1	major_base=T	major_cov=28/10	major_frequency=7.037e-01	minor_base=C	minor_cov=12/4	new_cov=12/4	polymorphism_frequency=2.963e-01	polymorphism_score=40.7	prediction=polymorphism	ref_cov=28/10	total_cov=41/14
RA	626	.	NC_000913	4296380	1	.	C	bias_e_value=3483800	bias_p_value=0.750552	consensus_score=241.9	fisher_strand_p_value=0.383562	frequency=1	ks_quality_p_value=0.998479	major_base=C	major_cov=45/27	major_frequency=9.863e-01	minor_base=T	minor_cov=0/1	new_cov=45/27	polymorphism_frequency=9.863e-01	polymorphism_score=-5.8	prediction=consensus	ref_cov=1/0	total_cov=47/28
RA	627	.	NC_000913	4296380	2	.	G	bias_e_value=4639710	bias_p_value=0.999582	consensus_score=253.8	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.971233	major_base=G	major_cov=46/28	major_frequency=9.867e-01	minor_base=.	minor_cov=1/0	new_cov=46/28	polymorphism_frequency=9.867e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=1/0	total_cov=47/28
RA	628	.	NC_000913	4298832	0	C	T	bias_e_value=3910410	bias_p_value=0.842462	consensus_score=299.9	fisher_strand_p_value=0.494118	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=43/41	major_frequency=9.882e-01	minor_base=G	minor_cov=0/1	new_cov=43/41	polymorphism_frequency=9.882e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=43/42
RA	629	.	NC_000913	4321427	0	C	T	consensus_score=242.8	frequency=1	major_base=T	major_cov=19/48	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=19/48	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=19/48
RA	630	.	NC_000913	4345084	0	C	T	consensus_score=360.5	frequency=1	major_base=T	major_cov=45/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=45/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=45/58
RA	631	.	NC_000913	4360965	0	C	A	bias_e_value=1.95413e-06	bias_p_value=4.20999e-13	consensus_reject=FREQUENCY_CUTOFF	consensus_score=350.4	fisher_strand_p_value=1.27605e-14	frequency=2.393e-01	ks_quality_p_value=1	major_base=C	major_cov=44/80	major_frequency=7.607e-01	minor_base=A	minor_cov=39/0	new_cov=39/0	polymorphism_frequency=2.393e-01	polymorphism_score=23.6	prediction=polymorphism	ref_cov=44/80	total_cov=83/80
RA	632	.	NC_000913	4405371	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=431.1	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=49/77	major_frequency=9.921e-01	minor_base=G	minor_cov=0/1	new_cov=49/77	polymorphism_frequency=9.921e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/78
RA	633	.	NC_000913	4442457	0	C	T	bias_e_value=2230680	bias_p_value=0.480579	consensus_score=449.6	fisher_strand_p_value=0.175321	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=54/69	major_frequency=9.609e-01	minor_base=C	minor_cov=4/1	new_cov=54/69	polymorphism_frequency=9.609e-01	polymorphism_score=NA	prediction=consensus	ref_cov=4/1	total_cov=58/70
RA	634	.	NC_000913	4447069	0	C	T	consensus_score=414.1	frequency=1	major_base=T	major_cov=54/58	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=54/58	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=54/58
RA	635	.	NC_000913	4457008	0	C	T	consensus_score=329.7	frequency=1	major_base=T	major_cov=46/45	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=46/45	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=46/45
RA	636	.	NC_000913	4461522	0	G	A	bias_e_value=3921490	bias_p_value=0.844849	consensus_score=421.9	fisher_strand_p_value=0.497521	frequency=1	ks_quality_p_value=1	major_base=A	major_cov=62/57	major_frequency=9.835e-01	minor_base=C	minor_cov=2/0	new_cov=62/57	polymorphism_frequency=9.835e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=64/57
RA	637	.	NC_000913	4461531	0	G	A	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=447.5	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.998839	major_base=A	major_cov=62/62	major_frequency=9.920e-01	minor_base=G	minor_cov=1/0	new_cov=62/62	polymorphism_frequency=9.920e-01	polymorphism_score=-5.2	prediction=consensus	ref_cov=1/0	total_cov=63/62
RA	638	.	NC_000913	4466376	0	C	T	consensus_score=344.8	frequency=1	major_base=T	major_cov=49/44	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=49/44	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=49/44
RA	639	.	NC_000913	4485237	0	C	T	consensus_score=257.3	frequency=1	major_base=T	major_cov=48/24	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=48/24	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=48/24
RA	640	.	NC_000913	4488590	0	C	T	consensus_score=396.4	frequency=1	major_base=T	major_cov=66/54	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=66/54	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=66/54
RA	641	.	NC_000913	4542683	0	T	.	bias_e_value=4641650	bias_p_value=0.999999	consensus_score=758.6	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=0.99853	major_base=.	major_cov=84/63	major_frequency=9.932e-01	minor_base=T	minor_cov=1/0	new_cov=84/63	polymorphism_frequency=9.932e-01	polymorphism_score=-2.3	prediction=consensus	ref_cov=1/0	total_cov=85/63
RA	642	.	NC_000913	4566336	0	C	T	bias_e_value=4641650	bias_p_value=1	consensus_score=367.7	fisher_strand_p_value=1	frequency=1	ks_quality_p_value=1	major_base=T	major_cov=51/53	major_frequency=9.905e-01	minor_base=C	minor_cov=0/1	new_cov=51/53	polymorphism_frequency=9.905e-01	polymorphism_score=NA	prediction=consensus	ref_cov=0/1	total_cov=51/54
RA	643	.	NC_000913	4593535	0	C	T	consensus_score=370.2	frequency=1	major_base=T	major_cov=42/60	major_frequency=1.000e+00	minor_base=N	minor_cov=0/0	new_cov=42/60	polymorphism_frequency=1.000e+00	polymorphism_score=NA	prediction=consensus	ref_cov=0/0	total_cov=42/60
MC	644	.	NC_000913	257908	258683	0	0	left_inside_cov=0	left_outside_cov=133	right_inside_cov=2	right_outside_cov=135
MC	645	.	NC_000913	1196324	1211461	0	0	left_inside_cov=34	left_outside_cov=39	right_inside_cov=38	right_outside_cov=39
MC	646	.	NC_000913	1294035	1294175	0	0	left_inside_cov=0	left_outside_cov=130	right_inside_cov=1	right_outside_cov=131
MC	647	.	NC_000913	1303073	1303084	0	0	left_inside_cov=0	left_outside_cov=128	right_inside_cov=1	right_outside_cov=130
MC	648	.	NC_000913	1978495	1979270	0	0	left_inside_cov=0	left_outside_cov=120	right_inside_cov=0	right_outside_cov=161
MC	649	.	NC_000913	2558699	2565488	0	0	left_inside_cov=0	left_outside_cov=103	right_inside_cov=2	right_outside_cov=105
MC	650	.	NC_000913	3423806	3424449	427	211	left_inside_cov=38	left_outside_cov=40	right_inside_cov=38	right_outside_cov=39
MC	651	.	NC_000913	3682261	3682294	0	0	left_inside_cov=0	left_outside_cov=103	right_inside_cov=0	right_outside_cov=105
JC	652	.	NC_000913	1	1	NC_000913	4641652	-1	0	alignment_overlap=0	coverage_minus=60	coverage_plus=52	flanking_left=300	flanking_right=300	frequency=1	ignore=CIRCULAR_CHROMOSOME	junction_possible_overlap_registers=299	key=NC_000913__1__1__NC_000913__4641652__-1__0____300__300__0__0	max_left=297	max_left_minus=297	max_left_plus=243	max_min_left=149	max_min_left_minus=149	max_min_left_plus=140	max_min_right=148	max_min_right_minus=147	max_min_right_plus=148	max_pos_hash_score=598	max_right=295	max_right_minus=288	max_right_plus=295	neg_log10_pos_hash_p_value=0.4	new_junction_coverage=1.02	new_junction_read_count=114	polymorphism_frequency=1.000e+00	pos_hash_score=67	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=112
JC	653	.	NC_000913	57276	1	NC_000913	382590	-1	0	alignment_overlap=0	coverage_minus=47	coverage_plus=47	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__57276__1__NC_000913__382590__-1__0____300__300__0__1	max_left=297	max_left_minus=297	max_left_plus=284	max_min_left=144	max_min_left_minus=144	max_min_left_plus=140	max_min_right=142	max_min_right_minus=140	max_min_right_plus=142	max_pos_hash_score=598	max_right=288	max_right_minus=288	max_right_plus=263	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=0.86	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=94
JC	654	.	NC_000913	57280	-1	NC_000913	381260	1	0	alignment_overlap=0	coverage_minus=55	coverage_plus=50	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__57280__-1__NC_000913__381260__1__0____300__300__0__1	max_left=299	max_left_minus=288	max_left_plus=299	max_min_left=149	max_min_left_minus=149	max_min_left_plus=147	max_min_right=150	max_min_right_minus=150	max_min_right_plus=147	max_pos_hash_score=598	max_right=297	max_right_minus=297	max_right_plus=297	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.96	new_junction_read_count=107	polymorphism_frequency=1.000e+00	pos_hash_score=76	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=105
JC	655	.	NC_000913	257907	-1	NC_000913	258684	1	0	alignment_overlap=8	coverage_minus=57	coverage_plus=75	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__257907__-1__NC_000913__258676__1__8____300__300__0__0	max_left=288	max_left_minus=288	max_left_plus=287	max_min_left=138	max_min_left_minus=105	max_min_left_plus=138	max_min_right=144	max_min_right_minus=125	max_min_right_plus=144	max_pos_hash_score=582	max_right=289	max_right_minus=289	max_right_plus=280	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.22	new_junction_read_count=133	polymorphism_frequency=1.000e+00	pos_hash_score=80	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=132
JC	656	.	NC_000913	279163	1	NC_000913	2666074	1	0	alignment_overlap=0	coverage_minus=72	coverage_plus=59	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__279163__1__NC_000913__2666074__1__0____300__300__1__0	max_left=286	max_left_minus=286	max_left_plus=271	max_min_left=149	max_min_left_minus=149	max_min_left_plus=145	max_min_right=143	max_min_right_minus=139	max_min_right_plus=143	max_pos_hash_score=598	max_right=291	max_right_minus=291	max_right_plus=273	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.19	new_junction_read_count=133	polymorphism_frequency=1.000e+00	pos_hash_score=86	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=131
JC	657	.	NC_000913	291401	-1	NC_000913	2666082	-1	0	alignment_overlap=1	coverage_minus=53	coverage_plus=35	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__291402__-1__NC_000913__2666082__-1__1____300__300__1__0	max_left=284	max_left_minus=284	max_left_plus=278	max_min_left=148	max_min_left_minus=117	max_min_left_plus=148	max_min_right=141	max_min_right_minus=141	max_min_right_plus=113	max_pos_hash_score=596	max_right=298	max_right_minus=276	max_right_plus=298	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.80	new_junction_read_count=89	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	read_count_offset=9	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=1	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=88
JC	658	.	NC_000913	381260	1	NC_000913	382183	-1	0	alignment_overlap=0	coverage_minus=38	coverage_plus=34	flanking_left=300	flanking_right=300	frequency=NA	junction_possible_overlap_registers=299	key=NC_000913__381260__1__NC_000913__382183__-1__0____300__300__1__1	max_left=297	max_left_minus=297	max_left_plus=297	max_min_left=143	max_min_left_minus=143	max_min_left_plus=135	max_min_right=137	max_min_right_minus=137	max_min_right_plus=137	max_pos_hash_score=598	max_right=296	max_right_minus=296	max_right_plus=289	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.65	new_junction_read_count=73	polymorphism_frequency=NA	pos_hash_score=56	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=72
JC	659	.	NC_000913	381260	1	NC_000913	1105376	1	0	alignment_overlap=1	coverage_minus=66	coverage_plus=30	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__381260__1__NC_000913__1105375__1__1____300__300__1__0	max_left=287	max_left_minus=276	max_left_plus=287	max_min_left=146	max_min_left_minus=146	max_min_left_plus=143	max_min_right=143	max_min_right_minus=137	max_min_right_plus=143	max_pos_hash_score=596	max_right=295	max_right_minus=295	max_right_plus=294	neg_log10_pos_hash_p_value=0.7	new_junction_coverage=0.86	new_junction_read_count=96	polymorphism_frequency=1.000e+00	pos_hash_score=56	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=96
JC	660	.	NC_000913	382179	1	NC_000913	382590	-1	0	alignment_overlap=2	coverage_minus=23	coverage_plus=15	flanking_left=300	flanking_right=300	frequency=NA	junction_possible_overlap_registers=297	key=NC_000913__382177__1__NC_000913__382590__-1__2____300__300__1__1	max_left=291	max_left_minus=291	max_left_plus=265	max_min_left=140	max_min_left_minus=109	max_min_left_plus=140	max_min_right=137	max_min_right_minus=135	max_min_right_plus=137	max_pos_hash_score=594	max_right=294	max_right_minus=294	max_right_plus=224	neg_log10_pos_hash_p_value=2.9	new_junction_coverage=0.34	new_junction_read_count=38	polymorphism_frequency=NA	pos_hash_score=29	prediction=unknown	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=2	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=38
JC	661	.	NC_000913	566774	-1	NC_000913	568036	1	0	alignment_overlap=2	coverage_minus=12	coverage_plus=11	flanking_left=300	flanking_right=300	frequency=3.392e-01	junction_possible_overlap_registers=297	key=NC_000913__566774__-1__NC_000913__568034__1__2____300__300__0__0	max_left=225	max_left_minus=220	max_left_plus=225	max_min_left=146	max_min_left_minus=146	max_min_left_plus=144	max_min_right=142	max_min_right_minus=142	max_min_right_plus=141	max_pos_hash_score=594	max_right=164	max_right_minus=164	max_right_plus=154	neg_log10_pos_hash_p_value=5.6	new_junction_coverage=0.49	new_junction_read_count=54	polymorphism_frequency=3.392e-01	pos_hash_score=15	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.83	side_1_overlap=2	side_1_possible_overlap_registers=299	side_1_read_count=93	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.06	side_2_overlap=0	side_2_possible_overlap_registers=297	side_2_read_count=118	side_2_redundant=0	total_non_overlap_reads=23
JC	662	.	NC_000913	568449	1	NC_000913	1469240	-1	0	alignment_overlap=0	coverage_minus=40	coverage_plus=71	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__568449__1__NC_000913__1469240__-1__0____300__300__0__1	max_left=295	max_left_minus=284	max_left_plus=295	max_min_left=148	max_min_left_minus=148	max_min_left_plus=137	max_min_right=143	max_min_right_minus=142	max_min_right_plus=143	max_pos_hash_score=598	max_right=296	max_right_minus=296	max_right_plus=292	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.02	new_junction_read_count=114	polymorphism_frequency=1.000e+00	pos_hash_score=74	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=111
JC	663	.	NC_000913	568453	-1	NC_000913	1467910	1	0	alignment_overlap=1	coverage_minus=54	coverage_plus=58	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__568454__-1__NC_000913__1467910__1__1____300__300__0__1	max_left=297	max_left_minus=293	max_left_plus=297	max_min_left=149	max_min_left_minus=149	max_min_left_plus=140	max_min_right=148	max_min_right_minus=146	max_min_right_plus=148	max_pos_hash_score=596	max_right=290	max_right_minus=288	max_right_plus=290	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.05	new_junction_read_count=117	polymorphism_frequency=1.000e+00	pos_hash_score=85	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=112
JC	664	.	NC_000913	780554	1	NC_000913	2521006	-1	-4	alignment_overlap=-4	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=5.928e-02	junction_possible_overlap_registers=295	key=NC_000913__780554__1__NC_000913__2521006__-1__-4__GAAG__300__300__0__0	max_left=77	max_left_minus=77	max_left_plus=20	max_min_left=77	max_min_left_minus=77	max_min_left_plus=20	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=590	max_right=294	max_right_minus=226	max_right_plus=294	neg_log10_pos_hash_p_value=9.9	new_junction_coverage=0.05	new_junction_read_count=6	polymorphism_frequency=5.928e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.96	side_1_overlap=0	side_1_possible_overlap_registers=299	side_1_read_count=107	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=GAAG
JC	665	.	NC_000913	780918	-1	NC_000913	781445	1	0	alignment_overlap=76	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=7.276e-02	junction_possible_overlap_registers=223	key=NC_000913__780918__-1__NC_000913__781369__1__76____300__300__0__0	max_left=128	max_left_minus=128	max_left_plus=128	max_min_left=61	max_min_left_minus=61	max_min_left_plus=57	max_min_right=85	max_min_right_minus=85	max_min_right_plus=85	max_pos_hash_score=446	max_right=167	max_right_minus=163	max_right_plus=167	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.05	new_junction_read_count=4	polymorphism_frequency=7.276e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.64	side_1_overlap=76	side_1_possible_overlap_registers=299	side_1_read_count=71	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.59	side_2_overlap=0	side_2_possible_overlap_registers=223	side_2_read_count=49	side_2_redundant=0	total_non_overlap_reads=4
JC	666	.	NC_000913	781222	-1	NC_000913	781653	1	0	alignment_overlap=76	coverage_minus=4	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=9.324e-02	junction_possible_overlap_registers=223	key=NC_000913__781222__-1__NC_000913__781577__1__76____300__300__0__0	max_left=145	max_left_minus=145	max_left_plus=99	max_min_left=99	max_min_left_minus=70	max_min_left_plus=99	max_min_right=100	max_min_right_minus=100	max_min_right_plus=0	max_pos_hash_score=446	max_right=160	max_right_minus=154	max_right_plus=160	neg_log10_pos_hash_p_value=7.7	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=9.324e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.65	side_1_overlap=76	side_1_possible_overlap_registers=299	side_1_read_count=72	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.76	side_2_overlap=0	side_2_possible_overlap_registers=223	side_2_read_count=63	side_2_redundant=0	total_non_overlap_reads=6
JC	667	.	NC_000913	781369	1	NC_000913	2521006	-1	-4	alignment_overlap=-4	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=7.233e-02	junction_possible_overlap_registers=295	key=NC_000913__781369__1__NC_000913__2521006__-1__-4__GAAG__300__300__0__0	max_left=77	max_left_minus=77	max_left_plus=20	max_min_left=77	max_min_left_minus=77	max_min_left_plus=20	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=590	max_right=294	max_right_minus=226	max_right_plus=294	neg_log10_pos_hash_p_value=9.9	new_junction_coverage=0.05	new_junction_read_count=6	polymorphism_frequency=7.233e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.63	side_1_overlap=0	side_1_possible_overlap_registers=299	side_1_read_count=70	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=GAAG
JC	668	.	NC_000913	781577	1	NC_000913	2521006	-1	-4	alignment_overlap=-4	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=6.789e-02	junction_possible_overlap_registers=295	key=NC_000913__781577__1__NC_000913__2521006__-1__-4__GAAG__300__300__0__0	max_left=77	max_left_minus=77	max_left_plus=20	max_min_left=77	max_min_left_minus=77	max_min_left_plus=20	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_pos_hash_score=590	max_right=294	max_right_minus=226	max_right_plus=294	neg_log10_pos_hash_p_value=9.9	new_junction_coverage=0.05	new_junction_read_count=6	polymorphism_frequency=6.789e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.73	side_1_overlap=0	side_1_possible_overlap_registers=299	side_1_read_count=81	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.77	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=86	side_2_redundant=0	total_non_overlap_reads=4	unique_read_sequence=GAAG
JC	669	.	NC_000913	1105380	-1	NC_000913	1467910	1	0	alignment_overlap=0	coverage_minus=48	coverage_plus=76	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1105380__-1__NC_000913__1467910__1__0____300__300__0__1	max_left=297	max_left_minus=297	max_left_plus=295	max_min_left=140	max_min_left_minus=136	max_min_left_plus=140	max_min_right=150	max_min_right_minus=150	max_min_right_plus=139	max_pos_hash_score=598	max_right=295	max_right_minus=295	max_right_plus=293	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.16	new_junction_read_count=129	polymorphism_frequency=9.922e-01	pos_hash_score=77	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.01	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=124
JC	670	.	NC_000913	1286906	-1	NC_000913	1287557	1	0	alignment_overlap=20	coverage_minus=3	coverage_plus=4	flanking_left=300	flanking_right=300	frequency=1.071e-01	junction_possible_overlap_registers=279	key=NC_000913__1286906__-1__NC_000913__1287537__1__20____300__300__0__0	max_left=268	max_left_minus=268	max_left_plus=241	max_min_left=2	max_min_left_minus=0	max_min_left_plus=2	max_min_right=71	max_min_right_minus=22	max_min_right_plus=71	max_pos_hash_score=558	max_right=276	max_right_minus=22	max_right_plus=276	neg_log10_pos_hash_p_value=8.5	new_junction_coverage=0.08	new_junction_read_count=8	polymorphism_frequency=1.071e-01	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.62	side_1_overlap=20	side_1_possible_overlap_registers=299	side_1_read_count=69	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.66	side_2_overlap=0	side_2_possible_overlap_registers=279	side_2_read_count=69	side_2_redundant=0	total_non_overlap_reads=7
JC	671	.	NC_000913	1294034	-1	NC_000913	1294176	1	0	alignment_overlap=10	coverage_minus=57	coverage_plus=72	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=289	key=NC_000913__1294034__-1__NC_000913__1294166__1__10____300__300__0__0	max_left=286	max_left_minus=286	max_left_plus=283	max_min_left=141	max_min_left_minus=132	max_min_left_plus=141	max_min_right=144	max_min_right_minus=134	max_min_right_plus=144	max_pos_hash_score=578	max_right=288	max_right_minus=288	max_right_plus=280	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.21	new_junction_read_count=130	polymorphism_frequency=1.000e+00	pos_hash_score=81	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=10	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=289	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=129
JC	672	.	NC_000913	1299498	-1	NC_000913	1300698	1	0	alignment_overlap=4	coverage_minus=74	coverage_plus=60	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=295	key=NC_000913__1299498__-1__NC_000913__1300694__1__4____300__300__0__0	max_left=294	max_left_minus=285	max_left_plus=294	max_min_left=145	max_min_left_minus=145	max_min_left_plus=144	max_min_right=142	max_min_right_minus=133	max_min_right_plus=142	max_pos_hash_score=590	max_right=295	max_right_minus=293	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.24	new_junction_read_count=137	polymorphism_frequency=1.000e+00	pos_hash_score=88	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=4	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=134
JC	673	.	NC_000913	1303072	-1	NC_000913	1303085	1	0	alignment_overlap=1	coverage_minus=51	coverage_plus=73	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__1303072__-1__NC_000913__1303084__1__1____300__300__0__0	max_left=295	max_left_minus=295	max_left_plus=291	max_min_left=148	max_min_left_minus=148	max_min_left_plus=148	max_min_right=146	max_min_right_minus=146	max_min_right_plus=145	max_pos_hash_score=596	max_right=298	max_right_minus=289	max_right_plus=298	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.16	new_junction_read_count=129	polymorphism_frequency=1.000e+00	pos_hash_score=79	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=1	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=298	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=124
JC	674	.	NC_000913	1397238	-1	NC_000913	1978494	-1	0	alignment_overlap=0	coverage_minus=64	coverage_plus=53	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1397238__-1__NC_000913__1978494__-1__0____300__300__1__0	max_left=295	max_left_minus=273	max_left_plus=295	max_min_left=143	max_min_left_minus=139	max_min_left_plus=143	max_min_right=148	max_min_right_minus=148	max_min_right_plus=143	max_pos_hash_score=598	max_right=296	max_right_minus=296	max_right_plus=296	neg_log10_pos_hash_p_value=0.3	new_junction_coverage=1.07	new_junction_read_count=119	polymorphism_frequency=1.000e+00	pos_hash_score=69	prediction=consensus	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=299	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=117
JC	675	.	NC_000913	1469240	-1	NC_000913	1792772	1	0	alignment_overlap=2	coverage_minus=70	coverage_plus=43	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=297	key=NC_000913__1469240__-1__NC_000913__1792770__1__2____300__300__1__0	max_left=295	max_left_minus=295	max_left_plus=294	max_min_left=143	max_min_left_minus=143	max_min_left_plus=122	max_min_right=140	max_min_right_minus=137	max_min_right_plus=140	max_pos_hash_score=594	max_right=295	max_right_minus=295	max_right_plus=286	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.04	new_junction_read_count=115	polymorphism_frequency=1.000e+00	pos_hash_score=79	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=2	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=292	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=113
JC	676	.	NC_000913	1651548	-1	NC_000913	1792776	-1	0	alignment_overlap=0	coverage_minus=41	coverage_plus=39	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1651548__-1__NC_000913__1792776__-1__0____300__300__1__0	max_left=289	max_left_minus=277	max_left_plus=289	max_min_left=139	max_min_left_minus=139	max_min_left_plus=124	max_min_right=140	max_min_right_minus=140	max_min_right_plus=127	max_pos_hash_score=598	max_right=290	max_right_minus=290	max_right_plus=287	neg_log10_pos_hash_p_value=0.9	new_junction_coverage=0.74	new_junction_read_count=83	polymorphism_frequency=9.879e-01	pos_hash_score=53	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.01	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=1	side_2_redundant=0	total_non_overlap_reads=80
JC	677	.	NC_000913	1978503	1	NC_000913	2406787	-1	0	alignment_overlap=1	coverage_minus=69	coverage_plus=51	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__1978503__1__NC_000913__2406788__-1__1____300__300__1__0	max_left=285	max_left_minus=285	max_left_plus=249	max_min_left=148	max_min_left_minus=143	max_min_left_plus=148	max_min_right=145	max_min_right_minus=140	max_min_right_plus=145	max_pos_hash_score=596	max_right=297	max_right_minus=293	max_right_plus=297	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.10	new_junction_read_count=122	polymorphism_frequency=1.000e+00	pos_hash_score=80	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=120
JC	678	.	NC_000913	1979270	-1	NC_000913	2406780	1	0	alignment_overlap=0	coverage_minus=62	coverage_plus=61	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1979270__-1__NC_000913__2406780__1__0____300__300__1__0	max_left=289	max_left_minus=289	max_left_plus=281	max_min_left=148	max_min_left_minus=148	max_min_left_plus=148	max_min_right=147	max_min_right_minus=147	max_min_right_plus=146	max_pos_hash_score=598	max_right=298	max_right_minus=298	max_right_plus=287	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.11	new_junction_read_count=124	polymorphism_frequency=1.000e+00	pos_hash_score=78	prediction=consensus	read_count_offset=8	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=123
JC	679	.	NC_000913	1979271	1	NC_000913	2102947	-1	0	alignment_overlap=0	coverage_minus=56	coverage_plus=100	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__1979271__1__NC_000913__2102947__-1__0____300__300__0__1	max_left=299	max_left_minus=294	max_left_plus=299	max_min_left=145	max_min_left_minus=145	max_min_left_plus=145	max_min_right=145	max_min_right_minus=145	max_min_right_plus=129	max_pos_hash_score=598	max_right=293	max_right_minus=287	max_right_plus=293	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.44	new_junction_read_count=161	polymorphism_frequency=1.000e+00	pos_hash_score=99	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=156
JC	680	.	NC_000913	2068941	1	NC_000913	2319850	1	0	alignment_overlap=0	coverage_minus=60	coverage_plus=49	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__2068941__1__NC_000913__2319850__1__0____300__300__1__0	max_left=298	max_left_minus=298	max_left_plus=280	max_min_left=149	max_min_left_minus=149	max_min_left_plus=149	max_min_right=150	max_min_right_minus=141	max_min_right_plus=150	max_pos_hash_score=598	max_right=295	max_right_minus=291	max_right_plus=295	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.01	new_junction_read_count=113	polymorphism_frequency=1.000e+00	pos_hash_score=79	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=109
JC	681	.	NC_000913	2269876	1	NC_000913	2288919	1	0	alignment_overlap=1	coverage_minus=63	coverage_plus=63	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__2269875__1__NC_000913__2288919__1__1____300__300__0__1	max_left=298	max_left_minus=294	max_left_plus=298	max_min_left=142	max_min_left_minus=142	max_min_left_plus=135	max_min_right=147	max_min_right_minus=147	max_min_right_plus=132	max_pos_hash_score=596	max_right=293	max_right_minus=293	max_right_plus=274	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.16	new_junction_read_count=129	polymorphism_frequency=1.000e+00	pos_hash_score=86	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=126
JC	682	.	NC_000913	2269879	-1	NC_000913	2290113	-1	0	alignment_overlap=0	coverage_minus=54	coverage_plus=79	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__2269879__-1__NC_000913__2290113__-1__0____300__300__0__1	max_left=299	max_left_minus=299	max_left_plus=297	max_min_left=149	max_min_left_minus=117	max_min_left_plus=149	max_min_right=146	max_min_right_minus=133	max_min_right_plus=146	max_pos_hash_score=598	max_right=298	max_right_minus=298	max_right_plus=288	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.21	new_junction_read_count=135	polymorphism_frequency=1.000e+00	pos_hash_score=91	prediction=consensus	read_count_offset=4	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=295	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=133
JC	683	.	NC_000913	2288919	1	NC_000913	4536236	1	0	alignment_overlap=1	coverage_minus=50	coverage_plus=60	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__2288919__1__NC_000913__4536235__1__1____300__300__1__0	max_left=292	max_left_minus=292	max_left_plus=279	max_min_left=149	max_min_left_minus=149	max_min_left_plus=132	max_min_right=138	max_min_right_minus=135	max_min_right_plus=138	max_pos_hash_score=596	max_right=297	max_right_minus=292	max_right_plus=297	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.01	new_junction_read_count=112	polymorphism_frequency=1.000e+00	pos_hash_score=73	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=294	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=110
JC	684	.	NC_000913	2290113	-1	NC_000913	4536239	-1	0	alignment_overlap=0	coverage_minus=95	coverage_plus=66	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__2290113__-1__NC_000913__4536239__-1__0____300__300__1__0	max_left=294	max_left_minus=288	max_left_plus=294	max_min_left=149	max_min_left_minus=146	max_min_left_plus=149	max_min_right=139	max_min_right_minus=139	max_min_right_plus=125	max_pos_hash_score=598	max_right=299	max_right_minus=298	max_right_plus=299	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.48	new_junction_read_count=165	polymorphism_frequency=9.879e-01	pos_hash_score=105	prediction=consensus	read_count_offset=4	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=0	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.02	side_2_overlap=0	side_2_possible_overlap_registers=295	side_2_read_count=2	side_2_redundant=0	total_non_overlap_reads=161
JC	685	.	NC_000913	2319854	-1	NC_000913	2997691	-1	0	alignment_overlap=0	coverage_minus=34	coverage_plus=58	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__2319854__-1__NC_000913__2997691__-1__0____300__300__0__1	max_left=295	max_left_minus=288	max_left_plus=295	max_min_left=148	max_min_left_minus=148	max_min_left_plus=144	max_min_right=150	max_min_right_minus=150	max_min_right_plus=145	max_pos_hash_score=598	max_right=296	max_right_minus=296	max_right_plus=269	neg_log10_pos_hash_p_value=0.6	new_junction_coverage=0.87	new_junction_read_count=97	polymorphism_frequency=1.000e+00	pos_hash_score=58	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=92
JC	686	.	NC_000913	2521006	-1	NC_000913	2521249	1	0	alignment_overlap=76	coverage_minus=2	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=9.365e-02	junction_possible_overlap_registers=223	key=NC_000913__2521006__-1__NC_000913__2521173__1__76____300__300__0__0	max_left=218	max_left_minus=218	max_left_plus=150	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=81	max_min_right_minus=24	max_min_right_plus=81	max_pos_hash_score=446	max_right=81	max_right_minus=24	max_right_plus=81	neg_log10_pos_hash_p_value=8.2	new_junction_coverage=0.07	new_junction_read_count=6	polymorphism_frequency=9.365e-02	pos_hash_score=4	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.77	side_1_overlap=76	side_1_possible_overlap_registers=299	side_1_read_count=86	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.62	side_2_overlap=0	side_2_possible_overlap_registers=223	side_2_read_count=52	side_2_redundant=0	total_non_overlap_reads=4
JC	687	.	NC_000913	2558698	-1	NC_000913	2565489	1	0	alignment_overlap=8	coverage_minus=52	coverage_plus=51	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=291	key=NC_000913__2558698__-1__NC_000913__2565481__1__8____300__300__0__0	max_left=290	max_left_minus=270	max_left_plus=290	max_min_left=141	max_min_left_minus=138	max_min_left_plus=141	max_min_right=146	max_min_right_minus=141	max_min_right_plus=146	max_pos_hash_score=582	max_right=291	max_right_minus=269	max_right_plus=291	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.95	new_junction_read_count=103	polymorphism_frequency=1.000e+00	pos_hash_score=74	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=8	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=291	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=103
JC	688	.	NC_000913	2653419	-1	NC_000913	2653746	1	0	alignment_overlap=25	coverage_minus=3	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=8.994e-02	junction_possible_overlap_registers=274	key=NC_000913__2653419__-1__NC_000913__2653721__1__25____300__300__0__0	max_left=269	max_left_minus=191	max_left_plus=269	max_min_left=62	max_min_left_minus=0	max_min_left_plus=62	max_min_right=128	max_min_right_minus=128	max_min_right_plus=106	max_pos_hash_score=548	max_right=190	max_right_minus=128	max_right_plus=190	neg_log10_pos_hash_p_value=7.1	new_junction_coverage=0.09	new_junction_read_count=9	polymorphism_frequency=8.994e-02	pos_hash_score=9	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.84	side_1_overlap=25	side_1_possible_overlap_registers=299	side_1_read_count=94	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=274	side_2_read_count=96	side_2_redundant=0	total_non_overlap_reads=9
JC	689	.	NC_000913	2878341	-1	NC_000913	2878464	1	0	alignment_overlap=29	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.564e-02	junction_possible_overlap_registers=270	key=NC_000913__2878341__-1__NC_000913__2878435__1__29____300__300__0__0	max_left=139	max_left_minus=139	max_left_plus=4	max_min_left=98	max_min_left_minus=98	max_min_left_plus=4	max_min_right=132	max_min_right_minus=132	max_min_right_plus=0	max_pos_hash_score=540	max_right=267	max_right_minus=173	max_right_plus=267	neg_log10_pos_hash_p_value=10.0	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.564e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.01	side_1_overlap=29	side_1_possible_overlap_registers=299	side_1_read_count=113	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.25	side_2_overlap=0	side_2_possible_overlap_registers=270	side_2_read_count=126	side_2_redundant=0	total_non_overlap_reads=3
JC	690	.	NC_000913	3187426	-1	NC_000913	3737137	1	0	alignment_overlap=1	coverage_minus=90	coverage_plus=50	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__3187426__-1__NC_000913__3737136__1__1____300__300__1__0	max_left=284	max_left_minus=284	max_left_plus=281	max_min_left=149	max_min_left_minus=148	max_min_left_plus=149	max_min_right=148	max_min_right_minus=146	max_min_right_plus=148	max_pos_hash_score=596	max_right=296	max_right_minus=295	max_right_plus=296	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.29	new_junction_read_count=143	polymorphism_frequency=1.000e+00	pos_hash_score=86	prediction=consensus	read_count_offset=5	side_1_annotate_key=repeat	side_1_continuation=0	side_1_coverage=NA	side_1_overlap=1	side_1_read_count=NA	side_1_redundant=1	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=293	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=140
JC	691	.	NC_000913	3457055	-1	NC_000913	3457289	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.170e-02	junction_possible_overlap_registers=288	key=NC_000913__3457055__-1__NC_000913__3457278__1__11____300__300__0__0	max_left=203	max_left_minus=203	max_left_plus=92	max_min_left=106	max_min_left_minus=106	max_min_left_plus=92	max_min_right=86	max_min_right_minus=86	max_min_right_plus=0	max_pos_hash_score=576	max_right=197	max_right_minus=183	max_right_plus=197	neg_log10_pos_hash_p_value=10.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.170e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.35	side_1_overlap=11	side_1_possible_overlap_registers=299	side_1_read_count=151	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.16	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=125	side_2_redundant=0	total_non_overlap_reads=3
JC	692	.	NC_000913	3469040	-1	NC_000913	3469344	1	0	alignment_overlap=20	coverage_minus=4	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=5.167e-02	junction_possible_overlap_registers=279	key=NC_000913__3469040__-1__NC_000913__3469324__1__20____300__300__0__0	max_left=200	max_left_minus=200	max_left_plus=121	max_min_left=135	max_min_left_minus=135	max_min_left_plus=121	max_min_right=98	max_min_right_minus=98	max_min_right_plus=0	max_pos_hash_score=558	max_right=159	max_right_minus=157	max_right_plus=159	neg_log10_pos_hash_p_value=9.0	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=5.167e-02	pos_hash_score=5	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.91	side_1_overlap=20	side_1_possible_overlap_registers=299	side_1_read_count=101	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.21	side_2_overlap=0	side_2_possible_overlap_registers=279	side_2_read_count=126	side_2_redundant=0	total_non_overlap_reads=5
JC	693	.	NC_000913	3682260	-1	NC_000913	3682295	1	0	alignment_overlap=2	coverage_minus=37	coverage_plus=64	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=297	key=NC_000913__3682260__-1__NC_000913__3682293__1__2____300__300__0__0	max_left=280	max_left_minus=280	max_left_plus=275	max_min_left=144	max_min_left_minus=133	max_min_left_plus=144	max_min_right=149	max_min_right_minus=149	max_min_right_plus=138	max_pos_hash_score=594	max_right=290	max_right_minus=290	max_right_plus=289	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=0.93	new_junction_read_count=103	polymorphism_frequency=1.000e+00	pos_hash_score=73	prediction=consensus	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=2	side_1_possible_overlap_registers=299	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.00	side_2_overlap=0	side_2_possible_overlap_registers=297	side_2_read_count=0	side_2_redundant=0	total_non_overlap_reads=101
JC	694	.	NC_000913	3737141	-1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=73	coverage_plus=82	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__3737141__-1__NC_000913__4498181__1__0____300__300__0__1	max_left=297	max_left_minus=297	max_left_plus=295	max_min_left=147	max_min_left_minus=147	max_min_left_plus=139	max_min_right=148	max_min_right_minus=148	max_min_right_plus=143	max_pos_hash_score=598	max_right=297	max_right_minus=296	max_right_plus=297	neg_log10_pos_hash_p_value=0.0	new_junction_coverage=1.41	new_junction_read_count=157	polymorphism_frequency=1.000e+00	pos_hash_score=93	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=155
JC	695	.	NC_000913	4094350	-1	NC_000913	4094719	1	0	alignment_overlap=41	coverage_minus=4	coverage_plus=2	flanking_left=300	flanking_right=300	frequency=8.983e-02	junction_possible_overlap_registers=258	key=NC_000913__4094350__-1__NC_000913__4094678__1__41____300__300__0__0	max_left=206	max_left_minus=206	max_left_plus=184	max_min_left=85	max_min_left_minus=85	max_min_left_plus=20	max_min_right=108	max_min_right_minus=108	max_min_right_plus=75	max_pos_hash_score=516	max_right=239	max_right_minus=196	max_right_plus=239	neg_log10_pos_hash_p_value=8.0	new_junction_coverage=0.06	new_junction_read_count=6	polymorphism_frequency=8.983e-02	pos_hash_score=6	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.68	side_1_overlap=41	side_1_possible_overlap_registers=299	side_1_read_count=76	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.58	side_2_overlap=0	side_2_possible_overlap_registers=258	side_2_read_count=56	side_2_redundant=0	total_non_overlap_reads=6
JC	696	.	NC_000913	4123923	1	NC_000913	4498181	1	0	alignment_overlap=1	coverage_minus=50	coverage_plus=69	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__4123922__1__NC_000913__4498181__1__1____300__300__0__1	max_left=298	max_left_minus=297	max_left_plus=298	max_min_left=147	max_min_left_minus=143	max_min_left_plus=147	max_min_right=146	max_min_right_minus=146	max_min_right_plus=146	max_pos_hash_score=596	max_right=290	max_right_minus=290	max_right_plus=289	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.09	new_junction_read_count=121	polymorphism_frequency=1.000e+00	pos_hash_score=74	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=119
JC	697	.	NC_000913	4123927	-1	NC_000913	4499511	-1	0	alignment_overlap=1	coverage_minus=54	coverage_plus=54	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=298	key=NC_000913__4123928__-1__NC_000913__4499511__-1__1____300__300__0__1	max_left=293	max_left_minus=293	max_left_plus=285	max_min_left=141	max_min_left_minus=141	max_min_left_plus=140	max_min_right=141	max_min_right_minus=136	max_min_right_plus=141	max_pos_hash_score=596	max_right=287	max_right_minus=287	max_right_plus=265	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.02	new_junction_read_count=113	polymorphism_frequency=1.000e+00	pos_hash_score=76	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=293	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=1	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=108
JC	698	.	NC_000913	4135180	1	NC_000913	4498181	1	0	alignment_overlap=0	coverage_minus=54	coverage_plus=64	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__4135180__1__NC_000913__4498181__1__0____300__300__0__1	max_left=295	max_left_minus=291	max_left_plus=295	max_min_left=147	max_min_left_minus=136	max_min_left_plus=147	max_min_right=143	max_min_right_minus=136	max_min_right_plus=143	max_pos_hash_score=598	max_right=297	max_right_minus=296	max_right_plus=297	neg_log10_pos_hash_p_value=0.2	new_junction_coverage=1.07	new_junction_read_count=119	polymorphism_frequency=1.000e+00	pos_hash_score=75	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=118
JC	699	.	NC_000913	4135184	-1	NC_000913	4499511	-1	0	alignment_overlap=0	coverage_minus=43	coverage_plus=85	flanking_left=300	flanking_right=300	frequency=1	junction_possible_overlap_registers=299	key=NC_000913__4135184__-1__NC_000913__4499511__-1__0____300__300__0__1	max_left=295	max_left_minus=295	max_left_plus=295	max_min_left=149	max_min_left_minus=149	max_min_left_plus=140	max_min_right=149	max_min_right_minus=136	max_min_right_plus=149	max_pos_hash_score=598	max_right=298	max_right_minus=296	max_right_plus=298	neg_log10_pos_hash_p_value=0.1	new_junction_coverage=1.17	new_junction_read_count=130	polymorphism_frequency=1.000e+00	pos_hash_score=82	prediction=consensus	read_count_offset=5	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=0.00	side_1_overlap=0	side_1_possible_overlap_registers=294	side_1_read_count=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_continuation=0	side_2_coverage=NA	side_2_overlap=0	side_2_possible_overlap_registers=NA	side_2_read_count=NA	side_2_redundant=1	total_non_overlap_reads=128
JC	700	.	NC_000913	4215910	-1	NC_000913	4216208	1	0	alignment_overlap=11	coverage_minus=2	coverage_plus=1	flanking_left=300	flanking_right=300	frequency=2.542e-02	junction_possible_overlap_registers=288	key=NC_000913__4215910__-1__NC_000913__4216197__1__11____300__300__0__0	max_left=165	max_left_minus=165	max_left_plus=79	max_min_left=92	max_min_left_minus=92	max_min_left_plus=79	max_min_right=124	max_min_right_minus=124	max_min_right_plus=0	max_pos_hash_score=576	max_right=210	max_right_minus=197	max_right_plus=210	neg_log10_pos_hash_p_value=10.4	new_junction_coverage=0.03	new_junction_read_count=3	polymorphism_frequency=2.542e-02	pos_hash_score=3	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.20	side_1_overlap=11	side_1_possible_overlap_registers=299	side_1_read_count=134	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=0.94	side_2_overlap=0	side_2_possible_overlap_registers=288	side_2_read_count=101	side_2_redundant=0	total_non_overlap_reads=3
JC	701	.	NC_000913	4542682	1	NC_000913	4542996	1	0	alignment_overlap=9	coverage_minus=3	coverage_plus=10	flanking_left=300	flanking_right=300	frequency=8.374e-02	junction_possible_overlap_registers=290	key=NC_000913__4542682__1__NC_000913__4542987__1__9____300__300__0__0	max_left=262	max_left_minus=157	max_left_plus=262	max_min_left=136	max_min_left_minus=136	max_min_left_plus=77	max_min_right=134	max_min_right_minus=134	max_min_right_plus=118	max_pos_hash_score=580	max_right=278	max_right_minus=167	max_right_plus=278	neg_log10_pos_hash_p_value=6.3	new_junction_coverage=0.12	new_junction_read_count=13	polymorphism_frequency=8.374e-02	pos_hash_score=12	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.34	side_1_overlap=9	side_1_possible_overlap_registers=299	side_1_read_count=150	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.28	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=139	side_2_redundant=0	total_non_overlap_reads=13
JC	702	.	NC_000913	4542690	-1	NC_000913	4542986	-1	0	alignment_overlap=9	coverage_minus=11	coverage_plus=6	flanking_left=300	flanking_right=300	frequency=1.071e-01	junction_possible_overlap_registers=290	key=NC_000913__4542690__-1__NC_000913__4542995__-1__9____300__300__0__0	max_left=273	max_left_minus=273	max_left_plus=197	max_min_left=141	max_min_left_minus=141	max_min_left_plus=140	max_min_right=133	max_min_right_minus=117	max_min_right_plus=133	max_pos_hash_score=580	max_right=286	max_right_minus=286	max_right_plus=152	neg_log10_pos_hash_p_value=5.2	new_junction_coverage=0.17	new_junction_read_count=18	polymorphism_frequency=1.071e-01	pos_hash_score=16	prediction=polymorphism	reject=COVERAGE_EVENNESS_SKEW,FREQUENCY_CUTOFF	side_1_annotate_key=gene	side_1_continuation=0	side_1_coverage=1.49	side_1_overlap=9	side_1_possible_overlap_registers=299	side_1_read_count=166	side_1_redundant=0	side_2_annotate_key=gene	side_2_continuation=0	side_2_coverage=1.28	side_2_overlap=0	side_2_possible_overlap_registers=290	side_2_read_count=139	side_2_redundant=0	total_non_overlap_reads=17
UN	703	.	NC_000913	15667	16467
UN	704	.	NC_000913	20081	20283
UN	705	.	NC_000913	224010	224499
UN	706	.	NC_000913	225164	225317
UN	707	.	NC_000913	227278	228427
UN	708	.	NC_000913	228430	228430
UN	709	.	NC_000913	257908	258683
UN	710	.	NC_000913	270803	270803
UN	711	.	NC_000913	270805	271023
UN	712	.	NC_000913	274238	274238
UN	713	.	NC_000913	274240	274240
UN	714	.	NC_000913	274243	274243
UN	715	.	NC_000913	274246	274865
UN	716	.	NC_000913	279438	279657
UN	717	.	NC_000913	290919	291149
UN	718	.	NC_000913	315514	316196
UN	719	.	NC_000913	316199	316199
UN	720	.	NC_000913	316210	316210
UN	721	.	NC_000913	381512	382324
UN	722	.	NC_000913	391984	392697
UN	723	.	NC_000913	526132	526132
UN	724	.	NC_000913	526135	526136
UN	725	.	NC_000913	526140	526459
UN	726	.	NC_000913	526461	526463
UN	727	.	NC_000913	526466	526468
UN	728	.	NC_000913	567044	567045
UN	729	.	NC_000913	567047	567047
UN	730	.	NC_000913	567049	567049
UN	731	.	NC_000913	567051	567762
UN	732	.	NC_000913	574868	575505
UN	733	.	NC_000913	578729	578729
UN	734	.	NC_000913	578831	578831
UN	735	.	NC_000913	579134	579134
UN	736	.	NC_000913	579146	579146
UN	737	.	NC_000913	608262	609084
UN	738	.	NC_000913	688131	688763
UN	739	.	NC_000913	807306	807328
UN	740	.	NC_000913	1094515	1095223
UN	741	.	NC_000913	1196374	1211413
UN	742	.	NC_000913	1294035	1294175
UN	743	.	NC_000913	1299499	1300697
UN	744	.	NC_000913	1303073	1303084
UN	745	.	NC_000913	1396324	1396326
UN	746	.	NC_000913	1396330	1396964
UN	747	.	NC_000913	1468171	1468965
UN	748	.	NC_000913	1468967	1468967
UN	749	.	NC_000913	1469548	1469548
UN	750	.	NC_000913	1469550	1470229
UN	751	.	NC_000913	1528558	1528559
UN	752	.	NC_000913	1528561	1528886
UN	753	.	NC_000913	1528896	1528896
UN	754	.	NC_000913	1634370	1634370
UN	755	.	NC_000913	1634382	1634382
UN	756	.	NC_000913	1634388	1634388
UN	757	.	NC_000913	1634404	1634404
UN	758	.	NC_000913	1651123	1651270
UN	759	.	NC_000913	1978495	1979270
UN	760	.	NC_000913	2067008	2067033
UN	761	.	NC_000913	2067035	2067035
UN	762	.	NC_000913	2069199	2069200
UN	763	.	NC_000913	2069205	2069205
UN	764	.	NC_000913	2069210	2070005
UN	765	.	NC_000913	2102012	2102012
UN	766	.	NC_000913	2102015	2102658
UN	767	.	NC_000913	2102660	2102660
UN	768	.	NC_000913	2102662	2102663
UN	769	.	NC_000913	2170441	2170442
UN	770	.	NC_000913	2170446	2170446
UN	771	.	NC_000913	2170449	2171141
UN	772	.	NC_000913	2289199	2289825
UN	773	.	NC_000913	2514544	2515350
UN	774	.	NC_000913	2515355	2515355
UN	775	.	NC_000913	2558699	2565488
UN	776	.	NC_000913	2726336	2728990
UN	777	.	NC_000913	2729821	2729821
UN	778	.	NC_000913	2729823	2729823
UN	779	.	NC_000913	2729825	2730689
UN	780	.	NC_000913	2996626	2996626
UN	781	.	NC_000913	2996629	2997425
UN	782	.	NC_000913	3130426	3130427
UN	783	.	NC_000913	3130430	3131060
UN	784	.	NC_000913	3186385	3187165
UN	785	.	NC_000913	3365836	3366463
UN	786	.	NC_000913	3423933	3423933
UN	787	.	NC_000913	3423935	3424367
UN	788	.	NC_000913	3424938	3426599
UN	789	.	NC_000913	3427216	3428294
UN	790	.	NC_000913	3428297	3428297
UN	791	.	NC_000913	3583704	3583910
UN	792	.	NC_000913	3619548	3619549
UN	793	.	NC_000913	3619551	3620808
UN	794	.	NC_000913	3621355	3622057
UN	795	.	NC_000913	3622060	3622060
UN	796	.	NC_000913	3652293	3652948
UN	797	.	NC_000913	3652950	3652950
UN	798	.	NC_000913	3682261	3682294
UN	799	.	NC_000913	3762536	3762536
UN	800	.	NC_000913	3762539	3763793
UN	801	.	NC_000913	3764324	3764324
UN	802	.	NC_000913	3764327	3765001
UN	803	.	NC_000913	3765003	3765007
UN	804	.	NC_000913	3765009	3765012
UN	805	.	NC_000913	3765014	3765014
UN	806	.	NC_000913	3765016	3765016
UN	807	.	NC_000913	3765018	3765018
UN	808	.	NC_000913	3765020	3765024
UN	809	.	NC_000913	3765040	3765042
UN	810	.	NC_000913	3765045	3765045
UN	811	.	NC_000913	3942300	3943161
UN	812	.	NC_000913	3944339	3945289
UN	813	.	NC_000913	4035454	4035469
UN	814	.	NC_000913	4035471	4035471
UN	815	.	NC_000913	4036015	4036812
UN	816	.	NC_000913	4038120	4038411
UN	817	.	NC_000913	4039013	4039013
UN	818	.	NC_000913	4039015	4039098
UN	819	.	NC_000913	4039668	4040327
UN	820	.	NC_000913	4166923	4167940
UN	821	.	NC_000913	4168835	4171369
UN	822	.	NC_000913	4171371	4171372
UN	823	.	NC_000913	4176829	4176851
UN	824	.	NC_000913	4208394	4209465
UN	825	.	NC_000913	4210285	4212845
UN	826	.	NC_000913	4498470	4499231
UN	827	.	NC_000913	4507735	4507739
UN	828	.	NC_000913	4507741	4508415