mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 104 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,286,322 | 0 | T | . | 76.9% | 142.4 / 71.0 | 65 | intergenic (+35/+68) | proL/yejO | tRNA‑Pro/adhesin‑like autotransporter YejO |
| * | NC_000913 | 3,847,903 | 0 | A | G | 38.4% | 62.6 / 90.4 | 91 | I241T (ATC→ACC) | uhpC | inner membrane protein sensing glucose‑6‑phosphate |
| * | NC_000913 | 753,125 | 0 | T | A | 37.8% | 47.7 / 19.9 | 37 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 2,664,896 | 0 | T | G | 36.7% | 155.6 / 15.5 | 80 | G169G (GGT→GGG) | yfhR | putative peptidase |
| * | NC_000913 | 3,003,921 | 0 | T | G | 35.7% | 179.7 / 12.3 | 85 | Y145D (TAT→GAT) | xdhC | putative xanthine dehydrogenase iron‑sulfur‑binding subunit XdhC |
| * | NC_000913 | 1,292,458 | 0 | T | A | 35.1% | 59.2 / 13.5 | 38 | intergenic (+93/+51) | galU/hns | UTP‑‑glucose‑1‑phosphate uridylyltransferase/DNA‑binding transcriptional dual regulator H‑NS |
| * | NC_000913 | 2,001,911 | 0 | G | A | 33.3% | 66.4 / 13.7 | 42 | intergenic (‑122/+1) | fliA/fliX | RNA polymerase sigma factor FliA/small RNA FliX |
| * | NC_000913 | 3,206,435 | 0 | C | T | 33.3% | 54.6 / 25.6 | 49 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 2,745,089 | 0 | A | C | 33.0% | 210.0 / 19.3 | 101 | V84G (GTG→GGG) | trmD | tRNA m(1)G37 methyltransferase |
| * | NC_000913 | 3,531,440 | 0 | A | C | 32.4% | 389.4 / 25.6 | 179 | Y334D (TAT→GAT) | yhgE | putative transport protein YhgE |
| * | NC_000913 | 3,813,272 | 0 | C | T | 32.0% | 145.0 / 40.3 | 101 | S181L (TCG→TTG) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase |
| * | NC_000913 | 1,174,605 | 0 | T | C | 31.4% | 173.3 / 21.8 | 87 | G187G (GGA→GGG) | ycfT | inner membrane protein YcfT |
| * | NC_000913 | 3,026,941 | 0 | A | C | 31.2% | 214.0 / 13.9 | 94 | E392D (GAA→GAC) | guaD | guanine deaminase |
| * | NC_000913 | 4,429,984 | 0 | T | G | 31.2% | 172.8 / 11.1 | 79 | L41V (TTG→GTG) | cycA | D‑serine/alanine/glycine/:H(+)symporter |
| * | NC_000913 | 3,205,122 | 0 | A | G | 31.1% | 138.2 / 18.0 | 75 | G143G (GGA→GGG) | plsY | putative glycerol‑3‑phosphate acyltransferase |
| * | NC_000913 | 3,206,452 | 0 | C | A | 30.9% | 77.1 / 13.7 | 56 | intergenic (‑196/‑11) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 3,930,718 | 0 | T | G | 30.8% | 179.9 / 16.4 | 79 | T126P (ACC→CCC) | ravA | regulatory ATPase RavA |
| * | NC_000913 | 2,578,143 | 0 | A | C | 30.2% | 129.5 / 20.9 | 64 | L79V (TTA→GTA) | maeB | malate dehydrogenase (oxaloacetate‑decarboxylating) (NADP(+)) |
| * | NC_000913 | 599,576 | 0 | T | G | 30.1% | 167.3 / 15.1 | 73 | V288G (GTG→GGG) | cusA | copper/silver export system RND permease |
| * | NC_000913 | 689,514 | 0 | A | C | 30.0% | 195.4 / 20.4 | 101 | G456G (GGT→GGG) | lnt | apolipoprotein N‑acyltransferase |