| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,001,911 | 0 | G | A | 33.3% | 66.4 / 13.7 | 42 | intergenic (‑122/+1) | fliA/fliX | RNA polymerase sigma factor FliA/small RNA FliX |
| Reads supporting (aligned to +/- strand): ref base G (24/4); new base A (0/14); total (24/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.79e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTG‑CGTTATATGAGTTATCGGCATGATTAT‑CCGTTTCTGCAGGGTTTTT‑AA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGT‑AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGACAGAACCTGCTGCGGTACCTGGTTAGCTTT > NC_000913/2001663‑2002157 | cGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGTGGTATAGAGTGAATTCACGATAAACAGCCCTG‑CGTTATAGGAGTTATCGGCATGATTAT‑CCGTTTCTGCAGGGTTTTT‑AA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGT‑AAATTCCAGGCAGaa < 1:407079/251‑1 (MQ=255) gTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTG‑CGTTATATGAGTTATCGGCATGATTAT‑CCGTTTCTGCAGGGTTTTT‑AA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGT‑AAATTCCAGGCAGaa > 1:114924/1‑250 (MQ=255) aGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTG‑CGTTATATGAGTTATCGGCATGATTAT‑CCGTTTCTGCAGGGTTTTT‑AA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGT‑AAATTCCAGGCAGaaaaaaa < 2:114924/251‑1 (MQ=255) cAGGCGCAATGCTTCGTGACGCACCGGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACCCCTTCAGCGGTATAGAGTGAATTCACAATAAACAGCCCTG‑TTTTATATGAGTTATCGGAATGATTAT‑CCGTTTCTGCGGGGTTTTT‑AA‑TCGGACGATTAGGGGGTGAAAGGAGGGTTTATTGGGGGGTT‑ACAGGT‑AAATCCAAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCt < 1:91565/251‑1 (MQ=255) tcgtgccccACCGGCGGAACATACCGCTGCCACAGCGGTTTTTTATCCATTACCCCTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCTTG‑CTTTATATGATTTATCGGCTTGATTAT‑CCGTTTCTGCAGGTTTTTT‑AA‑TCGGACGATTAGTGGGTAAAAGGAGGGGTTATTTGGGGTTT‑ACAGGT‑AAATTCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTgcg < 1:350631/241‑1 (MQ=255) ccAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTG‑CGTTATATGAGTTATCGGCATGATTAT‑CCGTTTCTGCAGGGTTTTT‑AA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGT‑AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCAc > 2:58418/1‑222 (MQ=255) aCGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTG‑CGTTATATGAGTTATCGGCATGATTAT‑CCGTTTCTGCAGGGTTTTT‑AA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGT‑AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTa > 1:427458/1‑250 (MQ=255) ccATTACACCTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTG‑CGTTATATGAGTTATCGGCATGATTAT‑CCGTTTCTGCAGGGTTTTT‑AA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGT‑AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaaaa > 2:342972/1‑250 (MQ=255) ttACACCTTCAGCGGTATAGAGGAAATTCACGAAAAAC‑GCCCTTTCTTTATATGTGTT‑TTGGGATGTTTTTTCTGTTTCTGCGGTGTTTTT‑AA‑TCGGAAGATGGGTGGGAAAAATGGGGGTTTTTTTGGGGGTT‑AGAGTT‑AAATCCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtg < 2:541082/250‑1 (MQ=255) acCTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTG‑CGTTATATGAGTTATCGGCATGATTAT‑CCGTTTCTGCAGGGTTTTT‑AA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGT‑AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGACTACAAAAATGTGCa > 2:232484/1‑250 (MQ=255) ttCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTG‑CGTTATATGAGTTATCGGCATGATTAT‑CCGTTTCTGCAGGGTTTTT‑AA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGT‑AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAAtt > 2:547619/1‑251 (MQ=255) cAGCGGTAAAGAGTGAATTCACGATAAACAGCCCTG‑GGTTATATGAGTTATCGGAATGATTAT‑CCGTTTCTGCAGGGTTTTT‑AA‑TCGGACGATTAGTGGGTGAAATGGGGGGTTATTTGGGGTTT‑ACAGGA‑AAATTCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTc < 1:29865/250‑1 (MQ=255) gggTATAGAGTGAATTCACGAAAAACAGCCCGG‑CTTTATATGATTTATCGGCATATTTAT‑CCGTTTCTGCAGGTTTTTT‑AA‑GCGGACGATTAGGGGGTGAAATGAGGGGTTATTTGGGGGTT‑AAAGGA‑AAATCCCGGGCAAAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATa < 1:68324/250‑1 (MQ=255) aatttCAGGATAAACACCCCGG‑CTTTTTATGAGTTATCGGCATGATTAT‑CCGTTTCTGGGGGTTTTTT‑AA‑TGGGACGATTGGTGGGGGAAAGGAGGGTTTATTGGGGGGTT‑AAAGGA‑AAATCCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTc < 1:160234/248‑1 (MQ=255) aTTCACGATAAACAGCCCTG‑CGTTATATGAGTTATCGGCATGATTAT‑CCGTTTCTGCAGGGTTTTT‑AA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGT‑AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGGGCAAAtt > 2:538309/1‑233 (MQ=255) cGATAAACAGCCCTG‑CGTTATATGAGTTATCGGCATGATTAT‑CCGTTTCTGCAGGGTTTTT‑AA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGT‑AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGt > 2:291453/1‑251 (MQ=255) tAAACAGCCCTG‑CGTTATATGAGTTATCGGCATGATTAT‑CCGTTTCTGCAGGGTTTTT‑AC‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGT‑AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCACTTCAACTTGTAgg > 2:685003/1‑251 (MQ=255) aaaCAGCCCTG‑CGTTATATGAGTTATCGGCATGATTAT‑CCGTTTCTGCAGGGGTTTT‑AA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGT‑AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGc > 2:129883/1‑251 (MQ=255) aaaCAGCCCGG‑CGTTATATGATTTTTCGGCATGTTTAT‑CGTTTTCTGC‑GGGTTTTT‑AAATCGGACGATTGGTGGGTGAAATGAGGGGTTTTTTGGGGGTT‑ACAGAT‑AATTTCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGc < 1:150059/251‑1 (MQ=255) aaaCAGCCCAG‑CGTTATATGAGGTATCGGCATGATTAT‑CCGCTTCTGAAGGGTTTAT‑AA‑TCGGACGTGTAGTGGGTGAAATGCGGGGGTATTTGGGGGTT‑ACAGGG‑AAATTCCAGGCAGTAAAAAACCCCGCCGGTGGCGGGGAAGCACGGTTCAGACAACTTGCGCTTTATGGTGCCGGCTGCGGCGTAAACGCCTCATCCGGCCCACAAAAATGTGTGAATTCAATAAATTGCAATTAAACTTATAGGc > 2:518957/1‑251 (MQ=255) gatttATCGGCATGTTTTG‑CCGTTTCTG‑GGTGTTTTT‑AAATGGGACGATGAGGGGGTGAAATGGGGGTTTATTTGGGGTTT‑ACAGGA‑AACTTCCAGGCAGAAAAACACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATc < 1:680234/248‑1 (MQ=25) ttagcGGCATGAATAG‑CCGTTTCCGCAGGGTTTTT‑AA‑TAGGACGATTAGTGGGTGATATGGGGGGTTATTTGGGGGTT‑ACAGGC‑TTATTCCAGGCAGACAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGGCCAAATGCCCTTTTTGTTGCCCGGTGCGGGGTAAACGCCTTATCCGGCCTTCAAAACTGCGCAAATTCCACAAATTTCAATTTACCTTTTAGGCCCGCTAAGCGCAGCGCATAAgg > 2:602891/5‑251 (MQ=255) tATCGGCATGATTAT‑CCGTTTCTGCAGGGTTTTT‑AA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGT‑AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGc > 2:141570/1‑251 (MQ=255) gATTAT‑CCGTTTCTGCAGGGTTTTT‑AA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGT‑AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCg > 2:542846/1‑251 (MQ=255) cggtttgtgcgggTTTTTGAA‑TCGGGCGATTAGTGGGTTAAATGGGGGTTTATTTGGGTGTT‑A‑AGGTTAAATTCGAGGGAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCATGCAATTTGGCGTTGcc < 2:594569/240‑1 (MQ=25) ttttctggggggTTTTA‑AA‑TGGGACGATTGGTGGGTGAAATGAGGGGTTTTTTGGGGGTA‑ACAGGA‑AAATCCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGt < 2:35105/241‑1 (MQ=37) ggACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGT‑AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTAc > 2:573308/1‑251 (MQ=255) aTTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGT‑AAATTACAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACg > 2:87499/1‑250 (MQ=255) aaaaggggggtttATTGGGGGGTT‑ACAGGA‑AAATCCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTg < 1:685003/239‑1 (MQ=38) aTGAGGGGTTATTTGGGGGTT‑ACAGGT‑AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTgcagc > 2:228822/1‑251 (MQ=255) ggtttttttggggggTT‑AAAGGT‑AAATCCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCagag < 1:141570/241‑1 (MQ=38) ggTTTTTTGGGGGTTTACAGGA‑AAATCCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAgaga < 1:547619/251‑1 (MQ=38) gTTATTTGGGGGTT‑ACAGGT‑AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGAc > 2:161135/1‑250 (MQ=255) gggggggTT‑ACAGGT‑AAATCCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGACAGAAcc < 1:232484/249‑1 (MQ=255) ggggtTT‑ACAGAT‑AAATCCCAGACAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGACAGAACct < 2:427458/250‑1 (MQ=255) ggggTT‑ACAGGT‑AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGACAGAACctgc > 1:398489/1‑251 (MQ=255) ggggTT‑ACAGGT‑AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGACAGAACctgc > 2:612510/1‑251 (MQ=255) aCAGGT‑AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGACAGAACCTGCTGCGGt > 1:589037/1‑251 (MQ=255) gggT‑AAATTCCAGAAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGACAGAACCTGCTGCGGTAc < 1:291453/250‑1 (MQ=255) gT‑AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGACAGAACCTGCTGCGGTACCt > 1:358706/1‑251 (MQ=255) aTTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGACAGAACCTGCTGCGGTACCTGGtt > 2:679450/1‑251 (MQ=255) ggCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGACAGAACCTGCTGCGGTACCTGGTTAGCttt > 2:151048/1‑251 (MQ=255) | CGTCAAGTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTG‑CGTTATATGAGTTATCGGCATGATTAT‑CCGTTTCTGCAGGGTTTTT‑AA‑TCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTT‑ACAGGT‑AAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGACAGAACCTGCTGCGGTACCTGGTTAGCTTT > NC_000913/2001663‑2002157 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |