| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,286,322 | 0 | T | . | 76.9% | 142.4 / 71.0 | 65 | intergenic (+35/+68) | proL/yejO | tRNA‑Pro/adhesin‑like autotransporter YejO |
| Reads supporting (aligned to +/- strand): ref base T (8/7); new base . (28/22); total (36/29) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.18e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AAAAACCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGTTTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAGTATTCCACGGCGATTCTACCCCTGCGCCATTGCCATAGCTGACTGACAAATGACCGCTTAACGTCGGGGTAAACGATGACCTTATACCAGCCTGATAAACGCCACTGGTTCCAGCCACATCATTATTAAATTTGCCATCGTCATTAAC > NC_000913/2286072‑2286566 | aaaaaCCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACggttggt > 2:329559/1‑251 (MQ=255) aaaCCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGttt > 2:429946/1‑251 (MQ=255) aCCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGttttt < 1:431090/251‑1 (MQ=255) aCCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGttttt < 1:38485/251‑1 (MQ=255) gTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGTTTTTT‑ATATc > 1:462568/1‑251 (MQ=255) gTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGTTTTTT‑ATATc < 2:451240/251‑1 (MQ=255) tATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGTTTTTT‑ATATCTGCaattaat < 1:167165/250‑1 (MQ=255) aTTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGTTTTTT‑ATATCTGCaattaatt < 1:401289/250‑1 (MQ=255) tGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGGCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGTTTTTTTATATCTGCAATTAATTc < 2:212917/250‑1 (MQ=255) cAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAACCCAACCCTTACGGTTGGTTTTTT‑ATATCTGCAATTAATTCGAt > 2:300783/1‑250 (MQ=255) gTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGTTTTTT‑ATATCTGCAATTAATTCGATAAAc < 2:699246/251‑1 (MQ=255) tGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGTTTTTT‑ATATCTGCAATTAATTCGATAAAc > 2:556817/1‑250 (MQ=255) aCGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGTTTTTT‑ATATCTGCAATTAATTCGATAAACAGACCGTGac > 1:238883/1‑251 (MQ=255) gagaAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGTTTTTT‑ATATCTGCAATTAATTCGATAAACAGACCGTGacac > 1:90190/1‑251 (MQ=255) agaAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGTTTTTT‑ATATCTGCAATTAATTCGATAAAAAGAACGTGacac > 2:553421/1‑250 (MQ=255) gaAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGTTTTTT‑ATATCTGCAATTAATTCGATAAACAGACCGTGACACAt < 1:48266/251‑1 (MQ=255) aaGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGTTTTTT‑ATATCTGCAATTAATTCGATAAACAGACCGTGACACATc > 1:129929/1‑251 (MQ=255) tttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTCTATCTGCAATTAATTCGATAAACAGAACGTGACACATCACAGtt > 2:655185‑M1/1‑249 (MQ=255) ttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGtt > 2:690132‑M1/1‑248 (MQ=255) gCTAACTGATTAATTATAAATCAGTTAGAGAAATACCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTACAAATCCTCTCGTGCCGAACAAAAGTCCCAAGAAAAAACTAACACTTACGGTTGG‑TATTTTATATCTGCAATTAATTAGATAAACAGACCGTGACACATCACAGttaactct > 2:297709‑M1/1‑243 (MQ=255) aaCTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTAAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTCTATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcct > 2:576260‑M1/1‑240 (MQ=255) tGATTAATTATAGATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcat > 1:503188‑M1/1‑237 (MQ=255) gATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcat < 2:87802‑M1/250‑15 (MQ=255) aattaTAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttc < 1:420378‑M1/250‑19 (MQ=255) tataAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagc < 2:362794‑M1/250‑22 (MQ=255) aaaTCAGTTAGCGAACTATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGTTTTTT‑ATATCTGCAATTAATTCGATAAACAGACCGTGac > 2:235600/1‑217 (MQ=255) aaaTCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGTTTTTT‑ATATCTGCAATTAATTCGATAAACAGACCGTGac < 1:235600/217‑1 (MQ=255) cAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggc > 2:590005‑M1/1‑222 (MQ=255) gTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgc > 1:526541‑M1/1‑220 (MQ=255) gTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgc > 1:540733‑M1/1‑220 (MQ=255) aTCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacac < 2:462568‑M1/251‑55 (MQ=255) cGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacg < 2:427703‑M1/250‑56 (MQ=255) gtgGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgcccc > 1:29362‑M1/1‑191 (MQ=255) agcCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgcc > 1:612789‑M1/1‑170 (MQ=255) cGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcac > 2:376317‑M1/1‑165 (MQ=255) cGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcac < 1:553421‑M1/251‑87 (MQ=255) ggCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacgga < 1:429946‑M1/251‑93 (MQ=255) cggtaGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggacca < 2:503188‑M1/249‑96 (MQ=255) aCGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggacca < 2:663658‑M1/251‑96 (MQ=255) cgcAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgat < 1:590902‑M1/251‑102 (MQ=255) cAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatg > 1:260765‑M1/1‑148 (MQ=255) ggtggcgcaccgTCATTGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgggccatcaccacggaccacccgatgacagggt < 2:663188‑M1/247‑110 (MQ=255) cACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatg > 1:172195‑M1/1‑135 (MQ=255) aTGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccag < 1:556817‑M1/251‑124 (MQ=255) aTGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagcc > 1:85679‑M1/1‑128 (MQ=255) ggggTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccagct > 1:645302‑M1/1‑126 (MQ=255) gtCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgttg > 2:211034‑M1/1‑121 (MQ=255) gtCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgtt < 1:395512‑M1/250‑130 (MQ=255) cGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGAGAAACAGACCGTGACACATCACAGttacctctcctcattttcagctacgcggcgcatcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgttggc < 2:279878‑M1/251‑133 (MQ=255) gTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgttggcggcac < 1:376317‑M1/251‑138 (MQ=255) gAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgttggcggcacaggc < 2:585510‑M1/251‑142 (MQ=255) ggTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgttggcggcacaggcgc > 1:258893‑M1/1‑108 (MQ=255) ggTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgttggcggcacaggcgc > 2:588098‑M1/1‑108 (MQ=255) aTCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgttggcggcacaggcgctggcaac < 2:266194‑M1/251‑151 (MQ=255) ccTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgttggcggcacaggcgctggcaacgg > 1:563317‑M1/1‑99 (MQ=255) ctctCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgttggcggcacaggcgctggcaacggc > 1:390779‑M1/1‑98 (MQ=255) cGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgttggcggcacaggcgctggcaacggcccgt < 1:548480‑M1/251‑158 (MQ=255) aaaaaTCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagagtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgttggcggcacaggcgctggcaacggcccgtaacgctttcg > 2:1746‑M1/1‑84 (MQ=255) aaaTCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgttggcggcacaggcgctggcaacggcacgtaccgctttcggt > 2:358368‑M1/1‑82 (MQ=255) aTCCCAAGAAAAAACCAACCCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagggtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgttggcggcacaggcgctggcaacggcccgtaccgctttcggttt > 1:150361‑M1/1‑80 (MQ=255) aaaCCAACCCTTGCGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgttggcggcacaggcgctggcaacggcccgtaccgctttcggtttgccgatggcgt > 1:503135‑M1/1‑69 (MQ=255) aaccaaccCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgttggcggcacaggcgctggcaacggcccgtaccgctttcggtttgccgatggcgtt < 2:540733‑M1/251‑184 (MQ=255) aaccaaccCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccaccc > 2:550580‑M1/1‑68 (MQ=255) aaccaaccCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccaccc < 1:550580‑M1/166‑99 (MQ=255) ccaaccCTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgttggcggcacaggcgctggcaacggcccgtaccgctttcggtttgccgatggcgtt > 1:562869‑M1/1‑66 (MQ=255) cccTTACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgttggcggcacaggcgctggcaacggcccgtaccgctttcggtttgccgatggcgttagcc > 1:656808‑M1/1‑62 (MQ=255) tACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgttggcggcacaggcgctggcaacggcccgtaccgctttcggtttgccgatggcgttagccagtt < 1:590005‑M1/249‑192 (MQ=255) tACGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgttggcggcacaggcgctggcaacggcccgtaccgctttcggtttgccgatggcgttagccagtt < 1:300783‑M1/249‑192 (MQ=255) cGGTTGG‑TTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcggtaaccggaaagtgtgccatcaccacggaccacccgatgacagggtattatgatagccagcttgttggcggcacaggcgctggcaacggcccgtaccgctttcggtttgccgatggcgttagccagttgctg > 1:82993‑M1/1‑56 (MQ=255) gttgg‑ttTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcgg < 2:644308‑M1/118‑65 (MQ=255) gttgg‑ttTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGttacctctcctcattttcagcttcgcggcgcagcagttgcgctttacgcgacacgccccagcgg > 1:644308‑M1/1‑54 (MQ=255) | AAAAACCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTCATGGGGTGTCGGGGGTCGGAGGTTCAAATCCTCTCGTGCCGACCAAAAATCCCAAGAAAAAACCAACCCTTACGGTTGGTTTTTTTATATCTGCAATTAATTCGATAAACAGACCGTGACACATCACAGCCTGTTTATTTTCTGTTATCAGAACGTCCAGACCACACCCGCCTGAGTATTCCACGGCGATTCTACCCCTGCGCCATTGCCATAGCTGACTGACAAATGACCGCTTAACGTCGGGGTAAACGATGACCTTATACCAGCCTGATAAACGCCACTGGTTCCAGCCACATCATTATTAAATTTGCCATCGTCATTAAC > NC_000913/2286072‑2286566 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |