mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 83,579 | (A)7→8 | intergenic (‑50/+43) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 124,078 | C→T | D354D (GAC→GAT) | aceE → | pyruvate dehydrogenase E1 component |
| RA | 137,378 | C→T | T99M (ACG→ATG) | cueO → | multicopper oxidase CueO |
| RA | 198,747 | A→G | S274G (AGC→GGC) | bamA → | outer membrane protein assembly factor BamA |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 262,762 | Δ1 bp | intergenic (+6/‑109) | proA → / → thrW | glutamate‑5‑semialdehyde dehydrogenase/tRNA‑Thr |
| RA | 498,116 | C→T | P21L (CCT→CTT) | hemH → | ferrochelatase |
| RA | 498,809 | A→G | K252R (AAA→AGA) | hemH → | ferrochelatase |
| RA | 499,060 | T→G | D305A (GAC→GCC) | aes ← | acetylesterase |
| MC JC | 499,082 | Δ52,248 bp | [aes]–[ybcF] | 46 genes [aes], gsk, ybaL, fsr, ushA, ybaK, chiX, ybaP, ybaQ, copA, copA, copA, glsA, ybaT, cueR, ybbJ, qmcA, fetA, fetB, cnoX, ybbO, tesA, ybbA, ybbP, rhsD, ybbC, ylbG, selU, allS, allA, allR, allZ, gcl, hyi, glxR, ybbW, allB, ybbY, glxK, allE, allC, allD, fdrA, ylbE, ylbF, [ybcF] |
|
| RA | 562,573 | G→A | V80I (GTT→ATT) | sfmH → | putative fimbrial adhesin protein SfmH |
| RA | 647,062 | G→A | R150C (CGT→TGT) | citG ← | triphosphoribosyl‑dephospho‑CoA synthase |
| RA | 662,387 | C→T | V86I (GTT→ATT) | ybeD ← | DUF493 domain‑containing protein YbeD |
| RA | 671,264 | A→G | G114G (GGT→GGC) | holA ← | DNA polymerase III subunit delta |
| RA | 694,721 | C→T | G79S (GGC→AGC) | miaB ← | isopentenyl‑adenosine A37 tRNA methylthiolase |
| RA | 709,364 | A→G | D344G (GAT→GGT) | chiP → | chitooligosaccharide outer membrane channel |
| RA | 723,528 | (T)8→7 | coding (887/2685 nt) | kdpD ← | sensor histidine kinase KdpD |
| RA | 981,850 | (G)6→5 | coding (804/1848 nt) | ldtD → | L,D‑transpeptidase LdtD |
| MC JC | 1,042,956 | Δ72,555 bp | [etk]–mdtG | 71 genes [etk], etp, gfcE, gfcD, gfcC, gfcB, gfcA, insA4, insB4, cspH, cspG, ymcF, ymcE, gnsA, yccM, torS, torT, torR, torC, torA, torD, cbpM, cbpA, yccE, agp, yccJ, wrbA, ymdF, rutG, rutF, rutE, rutD, rutC, rutB, rutA, rutR, putA, ymdG, putP, efeO, efeB, phoH, pgaD, pgaC, pgaB, pgaA, dgcT, insF4, insE4, ycdU, serX, ghrA, ycdX, ycdY, ycdZ, csgG, csgF, csgE, csgD, csgB, csgA, csgC, ymdA, ymdB, clsC, opgC, opgG, opgH, yceK, msyB, mdtG |
|
| RA | 1,350,723 | T→C | N106S (AAC→AGC) | fabI ← | enoyl‑[acyl‑carrier‑protein] reductase |
| MC JC | 1,351,171 | Δ239,229 bp | ycjD–ydeT | 230 genes ycjD, sapF, sapD, sapC, sapB, sapA, ymjA, puuP, ymjE, puuA, puuD, puuR, puuC, puuB, puuE, pspF, pspA, pspB, pspC, pspD, pspE, ycjM, ycjN, ycjO, ycjP, ycjQ, ycjR, ycjS, ycjT, ycjU, ompG, ycjW, ycjX, ycjF, tyrR, tpx, ycjG, mpaA, ymjC, ymjD, ycjY, pgrR, mppA, ynaI, insH4, ynaJ, uspE, fnr, ogt, abgT, abgB, abgA, abgR, mcaS, smrA, dgcM, ynaN, zntB, fnrS, ynaL, dbpA, ttcA, intR, xisR, rcbA, ralA, ralR, recT, recE, racC, ydaE, kilR, kilS, sieB, ydaF, ydaG, racR, ydaS, ydaT, ydaU, ydaV, ydaW, rzoR, trkG, ynaK, ydaY, ynaA, lomR, insH5, lomR, stfR, tfaR, pinR, ynaE, ynaM, uspF, ompN, micC, ydbK, ydbJ, hslJ, ldhA, ydbH, ynbE, ydbL, feaR, feaB, tynA, paaZ, paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK, paaX, paaY, ynbG, ydbA, insD2, insC2, ydbA, insI2, ydbA, pdxI, ydbD, ynbA, ynbB, ynbC, ynbD, azoR, hrpA, ydcF, aldA, cybB, rydC, ydcA, yncP, hokB, mokB, sokB, trg, ydcI, ydcJ, opgD, ydcH, rimL, ydcK, tehA, tehB, ydcL, insQ, ydcO, sutR, rlhA, yncJ, hicA, hicB, ydcR, ydcS, ydcT, ydcU, ydcV, patD, yncL, ortT, ydcY, ydcZ, mnaT, curA, mcbR, yncD, yncE, ansP, yncG, yncH, ydcD, yncO, ydcC, pptA, yddH, nhoA, yddE, narV, narW, narY, narZ, narU, yddK, yddL, yddG, fdnG, fdnH, fdnI, yddM, adhP, maeA, sra, bdm, osmC, ddpF, ddpD, ddpC, ddpB, ddpA, ddpX, dosP, dosC, yddY, digH, gadC, gadB, pqqL, yddB, yddA, yneP, ydeM, ydeN, ydeO, safA, ydeP, ydeQ, ydeR, ydeS, ydeT |
|
| RA | 1,590,430 | T→C | intergenic (‑429/+424) | ydeT ← / ← hipA | fimbrial usher domain‑containing protein YdeT/serine/threonine‑protein kinase toxin HipA |
| RA | 1,782,065 | (G)5→4 | coding (671/1290 nt) | ydiS → | putative electron transfer flavoprotein‑quinone oxidoreductase YdiS |
| RA | 1,789,654 | T→C | D14D (GAT→GAC) | ydiE → | PF10636 family protein YdiE |
| RA | 1,905,761 | G→A | G25D (GGT→GAT) | mntP → | Mn(2(+)) exporter |
| MC JC | 1,978,503 | Δ776 bp | insB5–insA5 | insB5, insA5 | |
| MC JC | 2,085,042 | Δ109,115 bp | [tsuA]–[mrp] | 106 genes [tsuA], plaP, yoeI, yeeY, yeeZ, yoeB, yefM, hisL, hisG, hisD, hisC, hisB, hisH, hisA, hisF, hisI, wzzB, ugd, gnd, wbbL, insH7, wbbL, wbbK, wbbJ, wbbI, wbbH, glf, rfbX, rfbC, rfbA, rfbD, rfbB, galF, wcaM, wcaL, wcaK, wzxC, wcaJ, cpsG, cpsB, wcaI, gmm, fcl, gmd, wcaF, wcaE, wcaD, wcaC, wcaB, wcaA, wzc, wzb, wza, yegH, asmA, dcd, udk, dgcE, alkA, yegD, yegI, yegJ, pphC, yegL, sibA, ibsA, sibB, ibsB, mdtA, mdtB, mdtC, mdtD, baeS, baeR, yegP, trhP, cyaR, ogrK, yegR, yegS, gatR, insE5, insF5, gatR, gatD, gatB, gatA, gatZ, gatY, fbaB, yegT, yegU, yegV, yegW, yegX, thiD, thiM, rcnR, rcnA, rcnB, yehA, yehB, yehC, yehD, yehE, [mrp] |
|
| MC JC | 2,286,372 | Δ22,969 bp | yejO–[alkB] | 24 genes yejO, insH8, yejO, narP, ccmH, ccmG, ccmF, ccmE, ccmD, ccmC, ccmB, ccmA, napC, napB, napH, napG, napA, napD, napF, yojO, eco, mqo, yojI, [alkB] |
|
| RA | 2,311,650 | A→G | F367S (TTC→TCC) | ompC ← | outer membrane porin C |
| MC JC | 2,312,100 | 24707 bp→A | [ompC]–[gyrA] | 16 genes [ompC], micF, rcsD, rcsB, rcsC, atoS, atoC, atoD, atoA, atoE, atoB, yfaP, yfaQ, yfaT, yfaA, [gyrA] |
|
| MC JC | 2,348,550 | Δ41,411 bp | [yfaE]–[yfbP] | 40 genes [yfaE], inaA, glpQ, glpT, glpA, glpB, glpC, rpnE, yfaU, yfaV, rhmD, yfaX, yfaY, yfaZ, nudI, ais, arnB, arnC, arnA, arnD, arnT, arnE, arnF, pmrD, menE, menC, menB, menH, menD, menF, elaB, elaA, rbn, elaD, yfbK, yfbL, yfbM, yfbN, yfbO, [yfbP] |
|
| RA | 2,389,974 | T→G | intergenic (+10/+74) | yfbP → / ← nuoN | uncharacterized protein YfbP/NADH:quinone oxidoreductase subunit N |
| RA | 2,390,295 | T→G | Q404P (CAG→CCG) | nuoN ← | NADH:quinone oxidoreductase subunit N |
| RA | 2,424,640 | T→C | Q198Q (CAA→CAG) | hisM ← | lysine/arginine/ornithine ABC transporter/histidine ABC transporter, membrane subunit HisM |
| RA | 2,531,483 | T→A | S7S (TCT→TCA) | cysZ → | sulfate:H(+) symporter |
| RA | 2,756,045 | T→C | intergenic (+90/‑114) | ssrA → / → intA | tmRNA/integrase IntA |
| RA | 2,756,047 | T→C | intergenic (+92/‑112) | ssrA → / → intA | tmRNA/integrase IntA |
| MC JC | 2,756,415 | Δ57,799 bp | [intA]–emrB | 53 genes [intA], yfjH, alpA, yfjI, yfjJ, abpB, abpA, yfjM, rnlA, rnlB, yfjP, yfjQ, yfjR, ypjK, yfjS, yfjT, yfjU, yfjW, yfjX, yfjY, ypjJ, yfjZ, ypjF, ypjA, ypjB, ypjC, ileY, glaH, lhgD, gabD, gabT, gabP, glaR, kbp, yqaE, ygaV, ygaP, stpA, alaE, ygaC, ygaM, nrdH, nrdI, nrdE, nrdF, proV, proW, proX, ygaZ, ygaH, mprA, emrA, emrB |
|
| RA | 2,823,802 | A→G | intergenic (‑33/+47) | recA ← / ← pncC | DNA recombination/repair protein RecA/NMN aminohydrolase |
| MC JC | 2,823,891 | Δ42,638 bp | [pncC]–ygbN | 41 genes [pncC], mltB, srlA, srlE, srlB, srlD, gutM, srlR, gutQ, norR, norV, norW, hypF, hydN, ascG, ascF, ascB, hycI, hycH, hycG, hycF, hycE, hycD, hycC, hycB, hycA, hypA, hypB, hypC, hypD, hypE, fhlA, ygbA, mutS, pphB, ygbI, ygbJ, ygbK, ygbL, ygbM, ygbN |
|
| RA | 2,880,912 | A→G | I46T (ATC→ACC) | casD ← | type I‑E CRISPR system Cascade subunit CasD |
| RA | 2,925,035 | C→T | T82T (ACG→ACA) | syd ← | SecY‑interacting protein |
| RA | 2,940,568 | T→C | T226A (ACC→GCC) | rlmM ← | 23S rRNA 2'‑O‑ribose C2498 methyltransferase |
| RA | 3,152,939 | A→G | E235G (GAA→GGA) | metC → | cystathionine beta‑lyase/L‑cysteine desulfhydrase/alanine racemase |
| RA | 3,194,362 | (G)6→7 | coding (1499/1662 nt) | yqiK → | flotillin family inner membrane protein YqiK |
| RA | 3,214,325 | T→C | F427L (TTC→CTC) | rpoD → | RNA polymerase sigma factor RpoD |
| RA | 3,216,473 | A→G | Y7H (TAC→CAC) | nfeF ← | NADPH‑dependent ferric‑chelate reductase |
| MC JC | 3,216,779 | 53253 bp→GTC | [nfeR]–yhaC | 50 genes [nfeR], aer, patA, ygjH, ebgR, ebgA, ebgC, ygjI, ygjJ, ygjK, fadH, higA, higB, rlmG, ygjP, ygjQ, ygjR, alx, sstT, ygjV, uxaA, uxaC, exuT, exuR, yqiM, yqjA, mzrA, yqjC, yqjD, yqjE, yqjK, yqjF, yqjG, yhaH, yhaI, yhaJ, yhaK, yhaL, cyuA, cyuP, tdcG, tdcF, tdcE, tdcD, tdcC, tdcB, tdcA, tdcR, yhaB, yhaC |
|
| RA | 3,297,193 | G→A | L316L (CTG→TTG) | yraQ ← | permease family protein YraQ |
| RA | 3,304,813 | (C)7→6 | coding (1005/1245 nt) | mtr ← | tryptophan:H(+) symporter Mtr |
| RA | 3,321,967 | A→G | intergenic (‑354/+105) | yhbX ← / ← leuU | putative hydrolase YhbX/tRNA‑Leu |
| RA | 3,436,697 | G→A | E60E (GAG→GAA) | trkA → | NAD‑binding component of Trk potassium transporters |
| RA | 3,449,779 | G→A | S35S (AGC→AGT) | rpsC ← | 30S ribosomal subunit protein S3 |
| RA | 3,468,768 | C→T | W362* (TGG→TGA) | chiA ← | endochitinase |
| RA | 3,474,425 | T→C | K43R (AAA→AGA) | rpsL ← | 30S ribosomal subunit protein S12 |
| RA | 3,523,800 | C→G | Y310* (TAC→TAG) | mrcA → | peptidoglycan glycosyltransferase/peptidoglycan DD‑transpeptidase MrcA |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,718,336 | A→C | *237E (TAA→GAA) | yiaF ← | DUF3053 domain‑containing protein YiaF |
| RA | 3,725,393 | G→A | intergenic (‑75/+20) | glyQ ← / ← ysaB | glycine‑‑tRNA ligase subunit alpha/putative lipoprotein YsaB |
| RA | 3,725,582 | C→A | C44F (TGC→TTC) | ysaB ← | putative lipoprotein YsaB |
| MC JC | 3,725,590 | 46159 bp→ATCG | [ysaB]–yibI | 41 genes [ysaB], wecH, yiaA, yiaB, xylB, xylZ, xylA, xylF, xylG, xylH, xylR, bax, baxL, malS, avtA, ysaA, plaR, yiaK, yiaL, yiaM, yiaN, yiaO, lyxK, sgbH, sgbU, sgbE, yiaT, yiaU, yiaV, yiaW, aldB, yiaY, selB, selA, yibF, rhsA, yibA, yibG, yibV, yibH, yibI |
|
| RA | 3,834,428 | (G)6→5 | coding (110/2319 nt) | yicI ← | alpha‑D‑xyloside xylohydrolase |
| RA | 3,854,281 | A→G | L120L (TTA→TTG) | emrD → | multidrug efflux pump EmrD |
| RA | 3,922,994 | T→C | intergenic (‑554/+63) | atpI ← / ← rsmG | ATP synthase accessory factor AtpI/16S rRNA m(7)G527 methyltransferase |
| RA | 3,939,662 | C→T | M317I (ATG→ATA) | hsrA ← | putative transporter HsrA |
| RA | 4,026,473 | Δ1 bp | coding (1486/1494 nt) | ubiD → | 3‑octaprenyl‑4‑hydroxybenzoate decarboxylase |
| RA | 4,033,572 | T→C | I143T (ATC→ACC) | trkH → | K(+) transporter TrkH |
| RA | 4,106,199 | A→G | E127G (GAG→GGG) | cpxP → | periplasmic protein CpxP |
| RA | 4,123,930 | A→T | V176E (GTA→GAA) | cytR ← | DNA‑binding transcriptional repressor CytR |
| RA | 4,174,041 | A→T | E320D (GAA→GAT) | birA → | DNA‑binding transcriptional repressor/biotin‑[acetyl‑CoA‑carboxylase] ligase BirA |
| RA | 4,204,890 | C→T | G348S (GGT→AGT) | purD ← | phosphoribosylamine‑‑glycine ligase |
| RA | 4,241,235 | A→G | G340G (GGT→GGC) | xylE ← | D‑xylose:H(+) symporter |
| RA | 4,278,657 | T→C | V60A (GTT→GCT) | ghxP → | guanine/hypoxanthine transporter GhxP |
| RA | 4,278,682 | C→T | A68A (GCC→GCT) | ghxP → | guanine/hypoxanthine transporter GhxP |
| RA | 4,279,023 | T→C | F182S (TTC→TCC) | ghxP → | guanine/hypoxanthine transporter GhxP |
| RA | 4,279,034 | Δ2 bp | coding (556‑557/1350 nt) | ghxP → | guanine/hypoxanthine transporter GhxP |
| MC JC | 4,279,050 | Δ82,373 bp | [ghxP]–[cadC] | 72 genes [ghxP], yjcE, yjcF, actP, yjcH, acs, ytcB, nrfA, nrfB, nrfC, nrfD, nrfE, nrfF, nrfG, gltP, yjcO, fdhF, mdtP, mdtO, mdtN, ytcA, yjcS, alsK, alsE, alsC, alsA, alsB, alsR, rpiB, yjdP, phnP, phnO, phnN, phnM, phnL, phnK, phnJ, phnI, phnH, phnG, phnF, phnD, phnC, yjdN, yjdM, rdcA, rdcB, proP, pmrR, basS, basR, eptA, adiC, adiY, adiA, melR, melA, melB, yjdF, fumB, dcuB, dcuR, dcuS, yjdI, yjdJ, ghoS, ghoT, lysU, dtpC, cadA, cadB, [cadC] |
|
| RA | 4,362,045 | T→C | intergenic (‑111/+506) | cadC ← / ← pheU | DNA‑binding transcriptional activator CadC/tRNA‑Phe |
| RA | 4,444,533 | A→G | D141G (GAC→GGC) | tamB → | translocation and assembly module subunit TamB |
| MC JC | 4,488,473 | Δ111,735 bp | yjgR–yjjA | 100 genes yjgR, idnR, idnT, idnO, idnD, idnK, ahr, leuX, insC6, insD6, yjgZ, insG, nanX, nanY, ythA, insO, insI3, insO, insO, fecE, fecD, fecC, fecB, fecA, fecR, fecI, ykiE, insA7, yjhU, yjhF, yjhG, yjhH, yjhI, sgcR, sgcE, sgcA, ryjB, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, topAI, ythB, nanS, nanM, nanC, fimB, fimE, fimA, fimI, fimC, fimD, fimF, fimG, fimH, gntP, uxuA, uxuB, uxuR, yjiC, ytiC, ytiD, idlP, iraD, hypT, iadA, yjiG, yjiH, kptA, yjiJ, yjiK, ytiA, yjiL, yjiM, yjiN, mdtM, ytiE, yjiR, yjiS, yjiT, mcrC, mcrB, mcrB, symE, symR, hsdS, hsdM, hsdR, mrr, yjiA, yjiX, btsT, tsr, lgoT, lgoR, lgoD, opgB, yjjA |
|
| RA | 4,600,215 | +C | intergenic (‑26/+23) | yjjA ← / ← dnaC | DUF2501 domain‑containing protein YjjA/DNA replication protein DnaC |
| RA | 4,606,215 | (G)8→9 | noncoding (72/87 nt) | leuP ← | tRNA‑Leu |
| RA | 4,618,638 | +C | coding (410/1323 nt) | deoA → | thymidine phosphorylase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 263050 | 388707 | 125658 | 21 [19] | [20] 21 | ykfI–tauD | ykfI,yafW,ykfH,ykfG,yafX,ykfF,ykfB,yafY,yafZ,ykfA,perR,insN,insI1,insN,eyeA,ykfC,insH1,mmuP,mmuM,afuC,insB2,insA2,yagB,yagA,yagE,yagF,yagG,yagH,xynR,argF,argL,ykgS,insB3,insA3,yagJ,yagK,yagL,yagM,ykgV,yagN,intF,yagP,paoD,paoC,paoB,paoA,yagU,ykgJ,ecpE,ecpD,ecpC,ecpB,ecpA,matA,ykgL,ykgO,ykgM,ykgR,insE1,insF1,rclC,rclB,rclA,rclR,ykgE,ykgF,ykgG,ykgH,betA,betB,betI,betT,yahV,pdeL,yahB,yahC,yahD,yahE,yahF,yahG,yahH,yahI,yahJ,yahK,yahL,yahM,yahN,yahO,prpR,prpB,prpC,prpD,prpE,codB,codA,cynR,cynT,cynS,cynX,lacA,lacY,lacZ,lacI,mhpR,mhpA,mhpB,mhpC,mhpD,mhpF,mhpE,mhpT,yaiL,frmB,frmA,frmR,yaiO,yaiX,insC1,insD1,yaiX,yaiP,ykiC,yaiS,tauA,tauB,tauC,tauD |
| * | * | ÷ | NC_000913 | 787553 | 922303 | 134751 | 21 [20] | [18] 21 | [gpmA]–macB | [gpmA],galM,galK,galT,galE,modF,modE,acrZ,modA,modB,modC,ybhA,pgl,ybhD,ybhH,ybhI,ybhJ,ybhC,ybhB,bioA,bioB,bioF,bioC,bioD,uvrB,ybhK,moaA,moaB,moaC,moaD,moaE,ybhL,ybhM,ybhN,clsB,ybhP,ybhQ,ybhR,ybhS,ybhF,ybhG,cecR,rhlE,ybiA,dinG,ybiB,hcxB,zbiJ,ybiE,ybiJ,ybiI,ybiX,fiu,mcbA,rlmF,ybiO,glnQ,glnP,glnH,dps,rhtA,yliM,ompX,opgE,rybA,mntS,mntR,ybiR,ldtB,ybiT,ybiU,ybiV,ybiW,ybiY,fsaA,moeB,moeA,iaaA,gsiA,gsiB,gsiC,gsiD,pdeI,dgcI,rimO,bssR,yliI,gstB,dacC,deoR,ybjG,mdfA,ybjH,ybjI,ybjJ,rcdA,rybB,ybjL,ybjM,grxA,ybjC,nfsA,rimK,ybjN,potF,potG,potH,potI,ybjO,rlmC,artJ,artM,artQ,artI,artP,ybjP,ybjQ,amiD,ybjS,ybjT,ltaE,poxB,hcr,hcp,lysO,aqpZ,ybjD,ybjX,macA,macB |
| * | * | ÷ | NC_000913 | 1591211 | 1652830 | 61620 | 21 [20] | [20] 21 | [hipA]–[ynfP] | [hipA],hipB,lsrK,lsrR,lsrA,lsrC,lsrD,lsrB,lsrF,lsrG,tam,yneE,uxaB,dgcF,yneG,glsB,sad,yneJ,yneK,ydeA,marC,marR,marA,marB,eamA,ydeE,mgtS,mgtT,mgrR,dgcZ,ydeI,ydeJ,dcp,ydfG,rspR,ydfZ,ydfI,ydfJ,ynfT,ydfK,pinQ,tfaQ,stfQ,nohA,ynfO,ydfO,gnsB,ynfN,ynfR,ynfQ,cspI,rzpQ,rzoQ,rrrQ,ydfR,essQ,ynfU,cspB,cspF,ynfS,ydfT,ydfU,rem,hokD,relE,relB,ydfV,flxA,ydfW,ydfX,dicC,dicA,ydfA,ydfB,ydfC,dicF,dicB,ydfD,[ynfP] |
| * | * | ÷ | NC_000913 | 3423834–3424234 | 3424451–3424238 | 5–618 | 21 [20] | [20] 21 | [rrlD] | [rrlD] |
| * | * | ÷ | NC_000913 | 3619001 | 3718329 | 99329 | 21 [20] | [20] 24 | rhsB–ghrB | rhsB,yhhH,yhhI,yhhJ,rbbA,yhiI,yhiY,yhiJ,yhiM,yhiN,pitA,uspB,uspA,yriA,yriB,dtpB,rsmJ,prlC,rlmJ,gor,dinQ,agrA,agrB,arsR,arsB,arsC,yhiS,insH11,yhiS,slp,dctR,yhiD,hdeB,hdeA,hdeD,arrS,gadE,gadF,mdtE,mdtF,gadW,gadY,gadX,gadA,ccp,treF,yhjB,rcdB,yhjD,yhjE,yhjG,pdeH,kdgK,yhjJ,dctA,pdeK,bcsC,bcsZ,bcsB,bcsA,yhjR,bcsE,bcsF,bcsG,ldrD,rdlD,yhjV,dppF,dppD,dppC,dppB,dppA,proK,eptB,yhjX,yhjY,tag,yiaC,bisC,yiaD,ghrB |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 44 (0.460) | 48 (0.540) | 47/448 | 0.4 | 57.1% | coding (290/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | 1209619 = | 31 (0.350) | intergenic (‑500/‑66) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1207805 | 43 (0.450) | 51 (0.570) | 44/448 | 0.5 | 58.9% | coding (305/630 nt) | ycfK | protein StfP |
| ? | NC_000913 | = 1209602 | 31 (0.350) | intergenic (‑483/‑83) | tfaE/pinE | putative tail fiber assembly protein TfaE/site‑specific DNA recombinase | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 48 (0.510) | 44/472 | 0.6 | 100% | intergenic (+253/‑69) | ychE/insH21 | MarC family putative inner membrane protein YchE/IS5 family transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 family transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||