mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 57 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 599,576 | 0 | T | G | 48.6% | 33.1 / 16.3 | 35 | V288G (GTG→GGG) | cusA | copper/silver export system RND permease |
| * | NC_000913 | 357,890 | 0 | C | A | 47.6% | 1.5 / 11.9 | 21 | L267F (TTG→TTT) | cynR | DNA‑binding transcriptional dual regulator CynR |
| * | NC_000913 | 2,395,444 | 0 | A | C | 39.7% | 102.1 / 18.2 | 69 | G151G (GGT→GGG) | nuoJ | NADH:quinone oxidoreductase subunit J |
| * | NC_000913 | 2,921,177 | 0 | A | C | 38.1% | 75.5 / 10.3 | 42 | G308G (GGT→GGG) | gudP | galactarate/D‑glucarate transporter GudP |
| * | NC_000913 | 1,621,118 | 0 | A | C | 38.0% | 75.7 / 12.3 | 51 | V7G (GTG→GGG) | eamA | cysteine/O‑acetylserine exporter EamA |
| * | NC_000913 | 4,256,069 | 0 | G | C | 38.0% | 70.8 / 24.9 | 50 | P133R (CCG→CGG) | plsB | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| * | NC_000913 | 4,604,344 | 0 | C | T | 37.2% | 58.2 / 13.9 | 43 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 2,001,918 | 0 | A | C | 36.4% | 40.9 / 12.3 | 33 | noncoding (189/195 nt) | fliX | small RNA FliX |
| * | NC_000913 | 2,001,911 | 0 | G | A | 35.3% | 42.9 / 14.0 | 34 | intergenic (‑122/+1) | fliA/fliX | RNA polymerase sigma factor FliA/small RNA FliX |
| * | NC_000913 | 3,177,748 | 0 | C | A | 33.3% | 67.3 / 17.2 | 49 | E55* (GAG→TAG) | nudF | ADP‑sugar pyrophosphatase |
| * | NC_000913 | 4,296,268 | 0 | T | C | 33.3% | 42.2 / 29.0 | 33 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 354,288 | 0 | T | G | 32.3% | 131.9 / 24.2 | 65 | V528G (GTG→GGG) | prpE | propionyl‑CoA synthetase |
| * | NC_000913 | 3,370,875 | 0 | A | C | 31.9% | 138.1 / 10.6 | 70 | G54G (GGT→GGG) | nanE | putative N‑acetylmannosamine‑6‑phosphate 2‑epimerase |
| * | NC_000913 | 811,721 | 0 | T | G | 31.8% | 140.7 / 14.9 | 85 | V67G (GTG→GGG) | bioC | malonyl‑acyl carrier protein methyltransferase |
| * | NC_000913 | 1,397,830 | 0 | T | C | 31.6% | 116.6 / 10.0 | 57 | I265V (ATT→GTT) | uspE | universal stress protein E |
| * | NC_000913 | 3,388,513 | 0 | A | C | 31.6% | 159.6 / 12.4 | 76 | V205G (GTG→GGG) | aaeA | aromatic carboxylic acid efflux pump membrane fusion protein |
| * | NC_000913 | 3,387,686 | 0 | G | A | 31.5% | 84.4 / 16.9 | 54 | S168F (TCT→TTT) | aaeB | aromatic carboxylic acid efflux pump subunit AaeB |
| * | NC_000913 | 3,665,702 | 0 | C | A | 31.1% | 79.8 / 10.6 | 45 | A37S (GCG→TCG) | gadX | DNA‑binding transcriptional dual regulator GadX |
| * | NC_000913 | 2,185,238 | 0 | A | G | 30.9% | 167.4 / 20.4 | 81 | S22P (TCC→CCC) | thiM | hydroxyethylthiazole kinase |
| * | NC_000913 | 2,386,862 | 0 | G | A | 30.8% | 40.1 / 12.2 | 26 | intergenic (+31/‑72) | yfbL/yfbM | putative peptidase YfbL/DUF1877 domain‑containing protein YfbM |