Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,001,9180AC36.4% 40.9 / 12.3 33noncoding (189/195 nt)fliXsmall RNA FliX
Reads supporting (aligned to +/- strand):  ref base A (15/6);  new base C (0/12);  total (15/18)
Fisher's exact test for biased strand distribution p-value = 5.36e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

GTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGACAGAACCTGCTGCGGTACCTGGTTAGCTTTTGC  >  NC_000913/2001669‑2002160
                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                   
gTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTTTCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGGTAAATTCCAGGCAGAAAAAAAc                                                                                                                                                                                                                                                    <  1:272367/251‑1 (MQ=255)
    cACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGGTAAATTCCAGGCAGAAAAAAACCccg                                                                                                                                                                                                                                               >  1:121485/1‑251 (MQ=255)
      cGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGGTAAATTCCAGGCAGAAAAAAACCccgcc                                                                                                                                                                                                                                             <  1:362828/251‑1 (MQ=255)
             aggCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATATCGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTgg                                                                                                                                                                                                                                        >  2:47252/2‑249 (MQ=255)
                                      gcttcgggcccccccaggggaaCATAACGCTGCACCAGCGGTTTTTTTCCCATTACCCCTTCGGGGGTAAAGAGTGAATTCACAATAAACACCCCGGCTTTATATGAGTTATCGGCATTATTTCCCGTTTCGGCAGGGTTTTTAATCGGACTATTGGTGGGGAAAATGAGGGGTTATTGGGGGGTTAAAGGTAAATTCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTgc                                                                                                                                                                                                             <  1:245788/230‑1 (MQ=255)
                                         gcgggACGCCCCAGCGGGACATAACGTTGCCACAGGGATTTTTTACCCTTTCCCCTTTCAGGGGTATAGAGTGAATACACGAAAAACAGCCCTGTTTTATATGATTTACCGGCATGATTATCCTTTTCTGCGGGTTTTTAAAGCGGACGATTAGGGGGAGAAAGGGGGGTTTATTGGGGGGTTAGGGGTAAATTCAGGGAAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTgcgc                                                                                                                                                                                                           <  1:321653/246‑1 (MQ=255)
                                               cGCACCAGGGGGACATACCGCTGCCCCAGCGATTTTTTACCCATTCCCCCTTCGGGGTTATAGAGTAAATTCACGAAAAACAGCCCTGCTTTATATGAGTTATCGGAATGTTTTTCCTTTTCTGCAGGGTTTTTAATCGGACGATTGGGGGGTGAAATGGGGGTTTATTGGGGGGTTACAGGTAAATCCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGt                                                                                                                                                                                                    <  1:7369/251‑1 (MQ=255)
                                                gCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGtt                                                                                                                                                                                                   >  2:341042/1‑251 (MQ=255)
                                                         gaacataccggtgcaaagaggtttttttACCCATTACCCCTCCAGCGGTATAGGGTAAATTCACGATAAACAGCCCGGCTTTATATGTGTTATGGGAATGTTTATCCGTTTCGGCAGGGTTTTAAATCGGACTATTAGTGGGTGAAATGGGGGTTTTTTTGGGGGTTACAGGAAAATTCCGGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgc                                                                                                                                                                                          <  2:97911/226‑1 (MQ=255)
                                                                      ccACAGCGAGGGTTTATCCATTACACCTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGGTATTTGGGGGTTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCt                                                                                                                                                                             >  2:58856/1‑251 (MQ=255)
                                                                       cacaGCGAGTGTTTATCCATTACACCTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCtt                                                                                                                                                                            >  1:361517/1‑251 (MQ=255)
                                                                            gaggttttttttcccttcctccTTCAGCGTTAGAGAGTGATTTCACAATAAACAGCCCTGCGTTATATTATTTATCGGCATGATTATCGTTTGTTGCGGGGTTTTTAATGGGAGGATGGGGGGGGGAAAGGGGGGTTTTTTGGGGGGTAACTGTTAAATCCCAGGCAAAAAAACACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATcc                                                                                                                                                                        <  2:473693/231‑1 (MQ=255)
                                                                                 tttttcccATAACACCTTCGGCGGTGAAGAGTCAATTCAGGATAAACAGCCTGGGGTTATTTGGGTTAGCGGTATGATTCTCCGTTCCTGAAGGGTTTTAATTCGAAGGATTGGTGGGGAAATTGGGGGTTTTTTGGGGGGTTACAGTAAAATCCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCt                                                                                                                                                                   <  1:369329/244‑1 (MQ=255)
                                                                                                   gcgggggtttagagtaaagacaggATAAACAGCCTTGTGTTTTATGATTTAGGGGCATGTTTATCGGTTTCTGAGGGTTTTTTAATGGGACGGTTAGTGGGTAAAAGGGGGGTTTTTTTGGGGTTTAGAAAAAAATTCCCGCCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTc                                                                                                                                                 <  2:93291/228‑1 (MQ=255)
                                                                                                              gagTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGGGAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATTTGCAAATTCAATAAATTGc                                                                                                                                       >  2:402959/1‑250 (MQ=255)
                                                                                                                  gatttCACGAAAAACGGCCCTGGTTTATATGATTTATCGGCATGTTTATCCTTTTCTGCAGGGTTTTTAATCGGACGTTTAGTGGGTGAAATGAGGGGTTTTTGGGGGGTTAAAGTAAAATTCCGGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAAtt                                                                                                                                   <  1:261562/247‑1 (MQ=255)
                                                                                                                  aaaTTCACAAAAAACAGCCCGGGGTTAAATGAGTTATCGGCATGTTTGTCCGTTTCGGAGGGTTTTTAAATGGGAGGTTTAGGGGGTGAAATGGGGGGTTATTGGGGGTTTACAGGAAAATCCCAGACGAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTc                                                                                                                                  <  1:141459/250‑1 (MQ=255)
                                                                                                                       cACGATAAACAGCCCTGCTTTATAGGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGAGAAATGAGGGTTTTTTGGGGGGTTACAGGTAAATCCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACt                                                                                                                              <  1:625093/250‑1 (MQ=255)
                                                                                                                                cAGCCCTGCGTTATATGCGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGGGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCgg                                                                                                                                                                      >  2:172066/1‑201 (MQ=255)
                                                                                                                                     cTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATa                                                                                                                 >  2:464890/1‑249 (MQ=255)
                                                                                                                                             tatGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAagcgcagcgc                                                                                                       >  1:617917/1‑251 (MQ=255)
                                                                                                                                                gAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATc                                                                                                    >  1:623709/1‑251 (MQ=255)
                                                                                                                                                gAGTTATCGGCATGATTATCCGTTTCTGCAGGGGTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATc                                                                                                    >  2:198527/1‑251 (MQ=255)
                                                                                                                                                    tATCGGCATGATTATCCTTTTCTGCGGGTTTTTTAATCGGAGAATTGGTGGGTAAAATGAGGGTTTTTTTGGGGTTTACAGAAAAATTCCAGACAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAgn                                                                                                 <  2:285839/250‑2 (MQ=37)
                                                                                                                                                      tCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCa                                                                                               >  2:297372/1‑250 (MQ=255)
                                                                                                                                                          cATGATTATCCGATTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCCGCGCATCAGGCAATTTg                                                                                          >  2:554571/1‑251 (MQ=255)
                                                                                                                                                                tttccttttCTGAGGGTTTTTTAATCGGACGTTTAGTGGGTGAAAGGGGGGTTTTTTGGGGGGTTACAGGAAAATCCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGtt                                                                                     <  1:364587/244‑1 (MQ=25)
                                                                                                                                                                     gTTTCTGCAGGGTTTTTAATCGGACGATTAGGGGGTGAACTGAGGGGTTATTTGGGGGTTACAGGTAAATTCCAGGCAGAAAAACACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTAGCCGGATGCGGCGTAAACTCCTTATCCGGCCTACAAAAATGCGCAAATTCAATAAATTGCAATTCCACTTGTCGGCCTGATAAGCGCAGTGCATCAGGCAATTAGGCGTTGCCGTc                                                                               >  2:452216/1‑251 (MQ=255)
                                                                                                                                                                        tttggCAGGTTTTTTAAGCGGACGATGAGTGGGTAAAAGGAGGGTTTATTTGGGGATGAAAGGTAAATCCCAGGAAAAAAAACACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCa                                                                              <  2:95553/246‑1 (MQ=37)
                                                                                                                                                                            ggaggttttttAAGCGGATGATTGGTGGGTAAAAGGGGGTGTTTTTTGGGTGTTACGGGAAATTTCGAGGAAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGtctc                                                                         <  2:190789/245‑1 (MQ=25)
                                                                                                                                                                                                            gAAATGAGGGGTTATTTGGGGGTTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGGTGCTGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCACTTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAAccccgc                                           >  1:159732/1‑248 (MQ=255)
                                                                                                                                                                                                                       tttttggggggTTACAGGAAAATTCCGGGAAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGACa                                 <  1:427273/244‑1 (MQ=255)
                                                                                                                                                                                                                                                 cAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGACAGAACCTGCTGCGGTACCTGGTTAGCt       <  1:341042/251‑1 (MQ=255)
                                                                                                                                                                                                                                                      aaaaaaaacCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGACAGAACCTGCTGCGGTACCTGGTTAGCTTTTGc  <  1:402959/249‑1 (MQ=255)
                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                   
GTTCCACGCTCGCGGGCAGTCGAACCTGCAGGCGCAATGCTTCGTGACGCACCAGCGGGACATAACGCTGCCACAGCGAGTGTTTATCCATTACACCTTCAGCGGTATAGAGTGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGGTTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTGGCGTTGCCGTCAGTCTCAGTTAATCAGGTTACAACGATTAACCCTGCAGCAGAGACAGAACCTGCTGCGGTACCTGGTTAGCTTTTGC  >  NC_000913/2001669‑2002160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: