Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,370,875 | 0 | A | C | 31.9% | 138.1 / 10.6 | 70 | G54G (GGT→GGG) | nanE | putative N‑acetylmannosamine‑6‑phosphate 2‑epimerase |
Reads supporting (aligned to +/- strand): ref base A (35/12); new base C (0/22); total (35/35) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 9.32e-10 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
CGGCGTTGAGCAGTCGGTCATCGCCAGTAAACCGTGATGGTGAATACGTGCCAGCAGCGTTTCAACAGGCACCGGACGCGGGCGGTCGGTGCCGTCAATGGCGATAATGTCCGCGCCCGCCTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCA > NC_000913/3370629‑3371123 | gggatttgaacagtgtgtctgagCCAGTAACCCGTGATGGTGAATACGGGCCAGCAGCGTTTCAACTGGCACCGGTCGCGGGCGGGCGGTGCCGTCAAGGGGGATAATGCCCGCGCCCGCCTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCTCGCTCACCAACGCACGCGTGGCTTGCAGATTTGCCACACCtt < 2:69397/229‑1 (MQ=255) cGTTGAGCAGTCGGTCATCGCCAGTAAACCGTGATGGTGAATACGTGCCAGCAGCGTTTCAACAGGCACCGGACGCGGGCGGTCGGTGCCGTCAATGGCGATAATGTCCGCGCCCGCCTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCa > 1:177088/1‑250 (MQ=255) gAGCAGTCGGTCATCGCCAGTAAACCGTGATGGTGAATACGTGCCAGCAGCGTTTCAACAGGCACCGGACGCGGGCGGTCGGTGCCGTCAATGGCGATAATGTCCGCGCCCGCCTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGc < 1:349573/250‑1 (MQ=255) ccATCGCCAGTAACCCGTGAGGGTGAATACGTGCCAGAAGCTTTTCAACAGGCACCGGACGCGGGCTGGCGGTGCCGTCAATGGCCATAATGTCCGCGCCCGCCTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAAct < 2:5036/250‑2 (MQ=255) gCCAGTAAACCGTGATGGTGAATACGTGCCAGCAGCGTTTCAACAGGCACCGGACGCGGGCGGTCGGTGCCGTCAATGGCGATAATGTCCGCGCCCGCCTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGcgcc > 2:16164/1‑251 (MQ=255) ccAGTAAACCGTGATGGTGAATACGTGCCAGCAGCGTTTCAACAGGCCCCGGACGCGGGCGGTCGGTGCCGTCAATGGCGATAATGTCCGCGCCCGCCTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGcgccc < 2:67807/251‑1 (MQ=255) ttaaCCGTGATGGTGAATACGTGCCAGCAGCGTTTCAACAGGCACCGGACGCGGGCGGTCGGTGCCGTCAATGGCGATAATGTCCGCGCCCGCCTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCt > 1:203970/3‑251 (MQ=255) tAAACCGTGATGGTGAATACGTGCCAGCAGCGTTTCAACAGGCACCGGACGCGGGCGGTCGGTGCCGTCAATGGCGATAATGTCCGCGCCCGCCTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCt > 1:203995/1‑251 (MQ=255) aaaCCGTGATGGTGAATACGTGCCAGCAGCGTTTCAACAGGCACCGGACGCGGGCGGTCGGTGCCGTCAATGGCGATAATGTCCGCGCCCGCCTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTg < 1:601055/251‑1 (MQ=255) gatggtaattccgtcccAGCAGCTTTTCAACAGGCCCCGGAGGGGGGGGGTCGGTGCCTTCAATGGCGATAATGTCCGCGCCCGCCTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCCCCGCACGCGTGGCTTGCAGATTTGCCACCCCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGcc < 1:120972/236‑1 (MQ=255) ggTGAATGCGGGCCAGCAGCGTTTCAACAGGCCCGGGGCGGGGGCGGTCGGTGCCGTAAATGGCGATAATGCCCGCGCCCGCCTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGCCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACCCCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCt < 1:466842/251‑1 (MQ=255) acggcccggcagcGTTCCAACGCGCCCCGGCCGCGGGCGTGCGGTGCGGTTAAGGGCATTAATGTCCGCCCCCGCCCGCGCCAGCGCATCAACA‑TCTTCAAAAAAGGCCGGGATGCGTCCCGGAGAA‑TCC‑TCCAGATCGCGTTCC‑CCAATTCC‑AATAAGCGTCGCGCCCCCCACCGCCCGCGTGGCTTGCAGATTTCCCACCCCTTCAA‑TGCGAATGGCACCCGCGCCCGCCTGTTCTGCCGCTAATGcc < 1:363511/242‑1 (MQ=255) cagccccgggccgggggcggTCGGGGCCGTAAAGGGCGATAATGCCCGCGCCCGCCTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGt < 1:16164/237‑1 (MQ=255) ggCACCGGACGCGGGCGGTCGGTGCCGTCAATGGCGATAATGTCCGCGCCCGCCTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGttt > 2:313971/1‑251 (MQ=255) cACCGGACGCGGGCGGTCGGTGCCGTCAATGGCGATAATGTCCGCGCCCGCCTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTAt > 1:390221/1‑251 (MQ=255) gatcggtGCCGTCAATGGCGATAATGTCCGCGCCCGCCTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGAGTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTACGGGTTTATCGAGCGGGCTGTcc > 2:88494/3‑251 (MQ=255) gtcggtGCCGTCAATGGCGATAATGTCCGCGCCCGCCTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTccc > 2:170116/1‑250 (MQ=255) ggtGCCTTCAAGGGCGATATTGCCCGCGCCCGCCGGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCTTGATGCGTCCCGGAGAC‑CCC‑TCCAGATCGCGTTTC‑CCAATTCC‑AATAACCGGCCCGCTCCCCACCGCACGCGTGGCTTGCAGATTTGCCACCCCTTCAA‑TGCGAATGGCACCCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGaa < 2:29842/251‑1 (MQ=255) tGCCGTCAATGGCGATAATGTCCGCGCCCGCCTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAAcc > 2:106666/1‑251 (MQ=255) gggattatttcccggccccgccTGCGCCAGCACACAAACA‑TCTACAATAGGGGCCGTGAGGGGT‑CCGGAAAAACCC‑TCCAGATCGGGTTTA‑TCAATTCC‑AAGAATCGCCCCGCTCACCACCGCAGGCGTGGCTTGCAGATTTGCCACCCCTACAA‑TGCGAATGGCAGCCGCTCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAgg < 1:522373/235‑1 (MQ=255) cccgatccccccTGCGCCAGCGCATCAACA‑TCTCCAATATAGCCCGTGATGCGTCCCGGAGAA‑CCC‑TCCAGATCGCGTTTC‑ACAATCCC‑AATAACCGGCCCGCTCACCACCGCACGCGTGGCTTGCAGATTTCCCCCCCCTTCAA‑TGCGAAGGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAg < 2:36105/241‑1 (MQ=255) ccGCGCCCGCCTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTTGCCGGAACCGGCTGGCAGGAGACAATCAgg > 2:446887/1‑251 (MQ=255) ccccgccTGCGCCAGCGCACCAACA‑TCTTCATTATAGCCCGTGGTGCGACCCGGAGAA‑TCC‑ACCAGATCGTTTTTC‑ACAATTCA‑AATAATCGGCCCGCTCACCACCGCACGCTTGGCTTGCAGATTTGCCACCCCTTCAA‑GGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCAc < 2:66707/250‑1 (MQ=255) cgccTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAg > 1:36105/1‑243 (MQ=255) cgccTGCGCCAGCGCATAAACA‑TCTTCAAGATAGGCCTTGATGC‑TGACGGAAAA‑CCCCTCCAGACCG‑GTTTCCACAATCCC‑AAAAACCGGCACCCTCCCCCCCGCCCGCGTGTGTTGCAGATTTCCCACCCCTACAA‑GGCGAATGTCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGt < 2:111375/251‑1 (MQ=255) accTGCGCCAGCGCA‑CAACAACCTTAAAAATAGCCCGTGATCCGTAGCGGATAA‑CCC‑CCCAGCTCTGGTTTC‑GCAATTCC‑AATACCCGGCACGCCAACCACCGCACGCGTGGCTTGAAGTTTTCCCCCACCTTCAA‑GGCGAAGGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGtt < 2:86600/250‑1 (MQ=255) gcCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTagcagc > 1:342909/1‑251 (MQ=255) ngcgcATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGAt > 2:270693/2‑251 (MQ=255) agcccataaaCA‑TCTTAAATATAGGCCGTGATGCGTACCGGAGAA‑CCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCCCCCCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACTGTTAGCAGCGAt < 1:446887/243‑1 (MQ=255) gcATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCCGGCAGGAGACAATCAGGCCACCGTTCGCAGCGAgttt > 1:351781/1‑251 (MQ=255) cA‑TCTTCAATATAGGCCTTGATGCGTACCGGAAAA‑CCC‑TCCAGATCGCTTTTC‑AAAATTCA‑AATAGTCGGCACCCCCACCACCGCACGCGTGGCTTGCAGATTTCCCACCCCTTAAA‑GGCGAATGGCACCCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATcc < 1:558518/251‑1 (MQ=255) aactctaaaatatagccctggATGCGTCCCGAGGAA‑TCC‑TCCAGACCGCGTTTC‑ACAATTCC‑AAAAACCGGCACGCCCCCCACCGCCCGCGTGGCTTGCGGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATc < 2:252346/231‑1 (MQ=255) aggggCCGGGATGCGTACCGGAGAA‑TCC‑CCCAGAGCGCGTTTC‑ACATTCCC‑AAAAACCGGCACCCCCACCACCGCGCGCGTGGTTTGCAGATTTCCCCCCCCTTAAA‑TGCGAAGGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCaa < 2:177088/248‑1 (MQ=255) aGGCCGTGATGCGTACCGGAGAA‑TCC‑TACAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGCGACAATCAGGCCACCGGTAGCAGCGATTTTTTGATTCAGTTGTGCCAGt > 2:115840/1‑251 (MQ=255) ggCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGt > 1:44722/1‑250 (MQ=255) ggCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCACCGATTTTTTGATCCAGTTGTGCAAGt > 2:301995/1‑250 (MQ=255) gTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACATTTCC‑AATAATCGGCACGCTCACCCCCGCACGCGTGGCTTGCAGATTTGCCACCCCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGa < 1:406328/251‑1 (MQ=255) gCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAACCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGacatac < 1:106666/251‑1 (MQ=255) gaaCCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGacatacat > 1:212800/3‑251 (MQ=255) tACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATc > 2:237742/1‑251 (MQ=255) cGGAAAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AAAAATCGGCCCGCCCACCACCGCACGCGTGGCTTGCAGATTGGCCACCCCTTAAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTc < 1:420384/251‑1 (MQ=255) gggaaaaccctccggcgcgcgTTTC‑CCAATTCC‑AATAATCGGCCCGCTCACCCCCGCCCGCGTGGCTTGCAGATTTGCCACCCCTTCAA‑TGCGAATGGCACCCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTc < 2:244654/234‑1 (MQ=255) gagcataatgtatcgcatggc‑acaATTCC‑AATAATCGGCACGCTCACCCCCGCACGCGTGGCTTGCAGATTTGCCACCCCTTCAA‑TGCGAATGGCACCCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCt < 1:534367/230‑1 (MQ=255) tcc‑tccAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGc > 1:165189/1‑251 (MQ=255) tcc‑tccAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGc > 1:402882/1‑251 (MQ=255) c‑tccAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGCATGACAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAAACAATCAGGCCACCGGTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTACCCTTAg > 2:20252/1‑248 (MQ=255) c‑tccAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCg > 1:594927/1‑250 (MQ=255) ccaaactcgtgTTTC‑CCAATCCC‑AATAATCGCCCCCCTCCCCCCCCCACGCGGTGCTTGCAGTTTTGCCCCCCCTTCAA‑GGCGAATGGCACCCGCCCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGan < 2:276492/241‑2 (MQ=255) gTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGGGGCTTACAGATTTGCAACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCGTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGATGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGCTAGCAGCGATTTTTTTATCCCGATGTGCACGTAAAGACATACATCATCCCTTAGCGaatggtacgggg > 2:400182/1‑241 (MQ=255) caATTCCCAAAAATCGGCACGCCCCCCCCCGCCCGCGGGGCTGGCAGTTTTGCACCCCCTCCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAg < 2:44722/251‑1 (MQ=255) aTTCC‑AATAACCGGCCCCCTCACCACCGCCCGCGTGGCTTGCAGATTTGCCCCCCCTTCAA‑TGCGAATGGCACCCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGAcc < 1:237742/251‑1 (MQ=255) cc‑AATAATCGGCACGCTCCCCACCGCACGCGGGGCTTGCAGATTTGCCCCCCCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTTCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGCACATAGACCggg < 1:431690/251‑1 (MQ=255) c‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGc > 1:537110/1‑251 (MQ=255) cgggCACGCTCCCCCCCGCACGCGTGGTTTGCAGTTTTGCCCCCCCTGAAA‑TGCAAATGGCAACCGCTCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAgg < 1:525377/249‑1 (MQ=255) ccGGCACGCCCCCCACCGCCCGCGTGGTTTGCAGATTTGCCTCCCCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAgg < 1:313971/250‑1 (MQ=255) ggCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGAt > 1:130102/1‑251 (MQ=255) gcccGCTCCCCCCCGCACGCGTGGCTTGCAGATTGGCCACACCTTAAA‑TGCGAAGGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGAtt < 1:212596/248‑1 (MQ=255) gCACGCTCACCACCGCACGCGTGGCTTGCATATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGAtt > 2:106046/1‑251 (MQ=255) cACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGAtt > 2:120488/1‑250 (MQ=255) cccccccGCGCGCGTGGCTTGAAGATTTCCCCCACCTTCAA‑GGAGAAGGCCACCCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACtttt < 2:332114/246‑1 (MQ=255) caccccCGCACGCGTGGCTTGCAGTTTTGCCCCACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACtt < 1:134516/249‑1 (MQ=255) ccaccGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTgg > 1:53107/1‑251 (MQ=255) caccGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGt > 2:446807/1‑251 (MQ=255) accGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGtt > 1:497410/1‑251 (MQ=255) ccGCACGCGGGGCTTGCAGATTTGCCACCCCTTCAA‑TGCGAATGGCACCCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGttt < 1:279195/251‑1 (MQ=255) cccgcgGGGCTTGAAGATTCGCCAC‑CCCTCAAGTGCGAGGGGCACCCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGa < 2:130102/249‑1 (MQ=255) gTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGGTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTaa > 2:303972/1‑250 (MQ=255) tGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAAt > 2:298096/1‑251 (MQ=255) cAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTCCCGCTAATGACATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGttttt > 1:343904/1‑251 (MQ=255) aGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTg > 1:245234/1‑251 (MQ=255) acacCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGCAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGcc > 2:528439/1‑250 (MQ=255) cacCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCa > 2:539505/1‑250 (MQ=255) cacCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGGTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATCCATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTACCTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCa > 2:85255/1‑250 (MQ=255) | CGGCGTTGAGCAGTCGGTCATCGCCAGTAAACCGTGATGGTGAATACGTGCCAGCAGCGTTTCAACAGGCACCGGACGCGGGCGGTCGGTGCCGTCAATGGCGATAATGTCCGCGCCCGCCTGCGCCAGCGCATCAACA‑TCTTCAATATAGGCCGTGATGCGTACCGGAGAA‑TCC‑TCCAGATCGCGTTTC‑ACAATTCC‑AATAATCGGCACGCTCACCACCGCACGCGTGGCTTGCAGATTTGCCACACCTTCAA‑TGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCGGCGACGATTTCGGGTTTATCGAGCGGGCTGTCCGGAACCGGCTGGCAGGAGACAATCAGGCCACCGTTAGCAGCGATTTTTTGATCCAGTTGTGCAAGTAACGACATACATCTTCCCTTAGCGAAAGGCCCGGTACATAGACCGGGCAACAGGATTAACTTTTGGTTTTGACTAAATCGTTTTTGGCGCTGCCA > NC_000913/3370629‑3371123 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |