mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 37 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,304,537 | 0 | A | G | 75.0% | 25.4 / 10.4 | 28 | intergenic (+144/+571) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 2,304,540 | 0 | C | T | 75.0% | 21.5 / 15.0 | 28 | intergenic (+147/+568) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 2,304,549 | 0 | C | T | 66.7% | 3.2 / 17.8 | 25 | intergenic (+156/+559) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 4,040,623 | 0 | G | A | 63.2% | 18.0 / 62.3 | 58 | noncoding (107/120 nt) | rrfA | 5S ribosomal RNA |
| * | NC_000913 | 2,304,567 | 0 | C | T | 47.8% | 0.0 / 23.6 | 23 | intergenic (+174/+541) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 3,751,537 | 0 | A | C | 43.8% | 48.4 / 12.4 | 48 | V111G (GTT→GGT) | yiaT | outer membrane protein YiaT |
| * | NC_000913 | 2,304,575 | 0 | G | A | 37.5% | 15.9 / 19.7 | 27 | intergenic (+182/+533) | eco/mqo | serine protease inhibitor ecotin/malate:quinone oxidoreductase |
| * | NC_000913 | 523,387 | 0 | A | G | 37.3% | 71.0 / 15.6 | 59 | M43V (ATG→GTG) | rhsD | protein RhsD |
| * | NC_000913 | 2,228,275 | 0 | T | C | 37.0% | 51.5 / 11.2 | 54 | intergenic (‑1005/‑707) | yohF/yohP | putative oxidoreductase YohF/putative membrane protein YohP |
| * | NC_000913 | 4,604,344 | 0 | C | T | 36.1% | 45.8 / 13.4 | 36 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,065,580 | 0 | T | A | 33.3% | 46.2 / 10.6 | 34 | T63S (ACC→TCC) | yihO | putative sulfoquinovose transporter |
| * | NC_000913 | 811,721 | 0 | T | G | 32.6% | 130.5 / 11.8 | 99 | V67G (GTG→GGG) | bioC | malonyl‑acyl carrier protein methyltransferase |
| * | NC_000913 | 3,177,531 | 0 | A | C | 31.8% | 62.0 / 10.8 | 44 | V127G (GTG→GGG) | nudF | ADP‑sugar pyrophosphatase |
| * | NC_000913 | 1,604,237 | 0 | C | T | 31.4% | 67.3 / 16.7 | 51 | S64L (TCG→TTG) | lsrD | Autoinducer‑2 ABC transporter membrane subunit LsrD |
| * | NC_000913 | 786,791 | 0 | C | A | 31.1% | 68.6 / 13.9 | 45 | intergenic (+106/+52) | aroG/gpmA | 3‑deoxy‑7‑phosphoheptulonate synthase, Phe‑sensitive/2,3‑bisphosphoglycerate‑dependent phosphoglycerate mutase |
| * | NC_000913 | 3,844,219 | 0 | T | G | 31.0% | 121.6 / 12.5 | 71 | F86V (TTT→GTT) | adeD | adenine deaminase |
| * | NC_000913 | 730,748 | 0 | T | C | 30.8% | 90.0 / 10.9 | 54 | I389T (ATC→ACC) | rhsC | rhs element protein RhsC |
| * | NC_000913 | 4,604,350 | 0 | C | T | 30.6% | 49.2 / 11.2 | 36 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,256,069 | 0 | G | C | 30.4% | 79.3 / 14.2 | 56 | P133R (CCG→CGG) | plsB | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| * | NC_000913 | 540,558 | 0 | T | G | 29.6% | 80.0 / 13.8 | 57 | intergenic (+50/‑7) | allB/ybbY | allantoinase/putative purine transporter |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4542682 = | 19 (0.320) | 4 (0.070) | 4/474 | 3.8 | 14.2% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 30 (0.530) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 1776504 | 37 (0.630) | 3 (0.050) | 3/484 | 4.2 | 4.7% | coding (918/1596 nt) | ydiF | putative acetate‑CoA transferase YdiF |
| ? | NC_000913 | = 3585332 | 85 (1.470) | coding (1492/1743 nt) | ggt | glutathione hydrolase proenzyme | |||||
| * | ? | NC_000913 | 1280768 = | 77 (1.310) | 3 (0.050) | 3/474 | 4.2 | 4.5% | coding (905/3744 nt) | narG | nitrate reductase A subunit alpha |
| ? | NC_000913 | 1768532 = | 52 (0.920) | coding (154/3057 nt) | ydiJ | putative FAD‑linked oxidoreductase YdiJ | |||||