| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 786,791 | 0 | C | A | 31.1% | 68.6 / 13.9 | 45 | intergenic (+106/+52) | aroG/gpmA | 3‑deoxy‑7‑phosphoheptulonate synthase, Phe‑sensitive/2,3‑bisphosphoglycerate‑dependent phosphoglycerate mutase |
| Reads supporting (aligned to +/- strand): ref base C (20/11); new base A (0/14); total (20/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.86e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCGCTGGCCTACGGTAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATG‑ACGTTTACTTCGCTTTACCCTGGTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAA > NC_000913/786542‑787035 | cATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCGCTGGCCTACGGTAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGcaaca < 2:504539/251‑1 (MQ=255) aTCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCGCTGGCCTACGGTAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGcaaca > 2:505939/1‑250 (MQ=255) aaTCAGAGCCTCGAGAGCGGGGAGCCGCTGGCCTACGGTAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCAc > 1:493073/1‑251 (MQ=255) aTCAGAGCCTCGAGAGCGGGGAGCCGCTGGCCTACGGTAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACt > 2:224704/1‑251 (MQ=255) cTCGAGCGCGGGGAGCCGCTGGCCTACGGTAAGAGCATCACCGATGCCTGCATCGGATGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCg > 2:98448/1‑251 (MQ=255) gCGGGGAGCCGCTGGCCTACGGTAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTtct < 2:477000/251‑1 (MQ=255) gCGGGGAGCCGCTGGCCTACGGTAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTtct < 1:525411/251‑1 (MQ=255) ggggAGCCGCTGGCCTACGGTAAGAGCATCTCCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGGCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAAGGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGGCGGCTTTCTCa < 2:388256/251‑1 (MQ=255) ggggAGCCGCTGGCCTACGGTAAGAGCATCCCCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTtctc > 1:454207/1‑250 (MQ=255) ccGCTGGCCTACGGTAAGAGTATCTCCGATGCCTGCATCGGCAGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACCTGCGGTCGGCTTTCTCATTTTaa < 2:94275/251‑1 (MQ=255) ggCCTACGGTAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCCTTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACgc > 2:7949/1‑249 (MQ=255) gCCTACGGTAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAAt > 2:276842/1‑251 (MQ=255) gTAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGATCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATG‑ACGttt > 1:540597/1‑251 (MQ=255) tAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATG‑ACGttt > 1:120363/1‑250 (MQ=255) agagCATCACCGATGCCTGCATCGGCTGGGCAGGTACCGATGCTCCGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTA‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTCGCAACAACAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTTAACGCATA‑ACGTTTACt > 2:412318/1‑251 (MQ=255) gagCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATG‑ACGTTTACtt > 1:162119/1‑251 (MQ=255) cATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAATCGAATG‑ACGTTTACTTCGc < 1:93874/251‑1 (MQ=255) aTCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATG‑ACGTTTACTTCGCt < 1:2141/251‑1 (MQ=255) ccGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATG‑ACGTTTACTTCGCTTTAc < 1:229632/251‑1 (MQ=255) gCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAATCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATG‑ACGTTTACTTCGCTTTACCCTGGttt < 1:515543/250‑1 (MQ=255) ggAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATG‑ACGTTTACTTCGCTTTACCCTGGTTTG‑CAA‑Ccgccgc > 2:30131/1‑251 (MQ=255) cGATGCTCTGTTACGTCACCTGGCGAATGCAGTACAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCCGGCAATGTGC‑TCCATTGTTAGCACCAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATG‑ACGTTTACTTCGCTTTACCCTGGTTTG‑CAA‑CCGCCGCTGCTTTCGc > 2:111847/1‑251 (MQ=255) gTTACGTCATCTGGAGAATGCGGAAAAAGCGCGTCGGGGGTAAGGTTTAATTG‑TGG‑GATGGGCCGTC‑AGAGGGGCGTATCC‑GATGAATCCCCACAGGCCTGATAAGCCGCGCAGCGTCGAATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGCCTCCCTTGCAGTCGGTTTTCTCATTTAAAACGAATG‑ACGTTTCCTTCGCTTTCCCCTGGTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGAtctc < 1:398340/251‑1 (MQ=255) gggCGAAGGCAGAAAAAGCGCGGCG‑GGGAAAAGTTTTATTGGCCG‑GATGCGCGGCC‑AGAGTGGCG‑ATCCCGATAAATCACCACAGCCCTGATAAGTCGCGCGGCGTCGCAACAGGAAATGTCC‑TCCATTGTTAGCAAAAAAAAGGCCGCCGCCCTTGCAGCCGTCTTCCTCTTTTAAAACGAATG‑CCGTTTACTCCGCTTT‑CCCCGGTTTGGCAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTAc < 2:120363/250‑1 (MQ=255) aGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATG‑ACGTTTACTTCGCTTTACCCTGGTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGataat > 2:97830/1‑250 (MQ=255) aaaaGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACACAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATG‑ACGTTTACTTCGCTTTACCCTGGTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCg > 1:245273/1‑251 (MQ=255) gcgTCGGGGGTAAGGTTTAATTG‑‑CGTGATGC‑CCCTCTAGGGTGGCTTTTCC‑AATAAATCCCCACAGGCCTGAAAATGCGCGCAGCGTCGCATCGGGCTTGGTGC‑TCCATTTTTAGAAAAAAAAAAGCCGCCTCACTTGCAGTCGTTTTTCTCATTTAAACCGATGG‑ACGTTTCCTTC‑CCTTGCCCTGGGTTG‑CAAACCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAg < 2:585582/251‑1 (MQ=255) tAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATG‑ACGTTTACTTCGCTTTACCCTGGTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCtcgt > 1:330489/1‑251 (MQ=255) cc‑AGAGTGCCTTATCC‑GATTAACCCCCACAGGCCTGTAAAGCCGGCCGGCTTCGCATCGGGCATTTTGC‑GCAATTGTAACCAACAAAAAGCCCGCCTCTCTTGCAGTCGGCTTTCTCATTTTAAACTAATG‑ACGTTTCCTTCTCTTTCCCCTGGTTTC‑TAC‑CCGTCGCTGCTGTCGCTGCGATCGCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCg < 1:271782/250‑1 (MQ=255) agTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGCATG‑ACGTTTACTTCGCTTTACCCTGGTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCAc > 1:211107/1‑251 (MQ=255) cc‑GATGAATCCCCACAGGCTGGATAAGTCGCGCCGCGCCGCATCAGGCAATGTCC‑TCAATTTTTAGAAAAAAAAAAGCCGCCTCACTGGCAGTCGTCTTTCTCATTTAAAACGATTG‑ACGTTTACTTCGCTTTACCCTGGTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCggg < 2:437574/251‑1 (MQ=255) acaccaaatgCCTGATAAGCCGCGCAGCTTCGCATCAGGCAATTTTC‑TCCATTGTTAGCAAAAAAAAAGCAGACCCATTTGCAGGCGGCTTTCTCATTTTAAACGAATG‑ACGTTTACTCCGTTTTCCCCTGTTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAg < 1:505939/242‑1 (MQ=255) aGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATG‑ACGTTTACTTCGCTTTACCCTGGTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCa > 1:132788/1‑248 (MQ=255) gCCTGAAAAGTCGCGCAGCTTCGCATCAGGCATTGGGC‑TCTATTGTTAAAAAAAAAAACGCCGACTCACTTGAAGTCGGCTTTCTCATTTTAAA‑GAAAGTACGTTTACTTCGTTTTCCCCGGGTTTG‑CAT‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAAt < 1:77958/251‑1 (MQ=255) tactccccgcAGCATCTCATCAGGAAATTTGC‑CCCTTTTTTAGCAACAAAAAAGCCCCCTCACTTGCTGTCGGCTTTCTCATTTTAAACAATTG‑ACGTTTCCTTCGCTTTCCCCTGGTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCGCGCCAGTCGGGATATTAAGCTCAAGAAGCtctt < 1:169428/243‑1 (MQ=255) aaGTCGCGAAGCGACGCTCCAGGCAA‑GTGCCACCATTTTAAGCAAAAAAAAAGCCGCCCCCCTGCCAGCCGGCTTCCTCATTTTAAACGATGG‑CCTTTTGCTTCTCTTTACCCTGGTTTG‑CAT‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCGCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCtcttct < 2:528373/251‑1 (MQ=255) gccgcccggCGTCGCATCAGGCAATGTGC‑TCCTTTTTAAGCAAAAAAAAAGCCCCCTCCCTGGCGGTCGTCTTTCTCATTTTAAACGAATG‑CCGTTTCCTCCGCTTTACCCTGTTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCttcttc < 2:132788/243‑1 (MQ=255) gTCGCGCAGCGCCGATTCAGGAAATGTGC‑TCCATTGTTAGAAAAAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTAAAACGAATG‑ACGTTTACTTCGCTTTCCCCTGGTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCttcttc < 1:276842/251‑1 (MQ=255) cgcAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATG‑ACGTTTACTTCGCTTTACCCTGGTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTc > 2:218906/1‑251 (MQ=255) cgcAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATG‑ACGTTTACTTCGCTTTACCCTGGTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTc > 1:405669/1‑251 (MQ=255) cAGGAAATGTCC‑TCCATTTTTAGCAAAAAAAAACCCGTCCCACTTGCAGTCGGCTTTCTCATTTAAACCGAATG‑CCGTTTACTTCGCTTTCCCCTGTTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGat < 1:358791/251‑1 (MQ=255) ggCAATGTGC‑GCCATTGTTAGCAAAAAAAAAGCCGACTCTCTTGCAGTCGGTTTTCTCATTTTAAACGAATG‑ACTTTTACTTCGCTTTCCCCTGGTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGatat < 1:224704/251‑1 (MQ=255) aggcaaggggccccATTGTAAGCAAAAAAAAAGCGGACTCACTTGCAGTCGGTTTTCTAATTTAAAACGAAGG‑ACTTTTACTTCGCTTTCCCCTGGTTGG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGata < 1:97830/239‑1 (MQ=255) aagggcc‑TCCATTGTTAGCAAAAAAAAAGCCGACTCACTTGCAGTCGGCTTTCGCATTTAAAACGAATG‑ACGTTTCCTTCGCTTCCCCCGGGTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTc < 1:98448/245‑1 (MQ=255) gTTAGCAAAAAAAAAGCCGACCCCCTTGCAGTCGTCTTTCTCATTTAAAACGAATG‑CCTTTTTCTTCGCTTTACCCTGTTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTa < 1:44328/251‑1 (MQ=255) aGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATG‑ACGTTTACTTCGCTTTACCCTGGTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTaa > 2:342316/1‑249 (MQ=255) aGCAAAAAAAAAGCCGACTCACTTGCAGTCGGTTTTCTCATTTTAAACGAATG‑ACGTTTACTTCGCTTTACCCTGGTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATATACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTaaa < 1:7949/250‑1 (MQ=255) | CATCTGGTGGAAGGCAATCAGAGCCTCGAGAGCGGGGAGCCGCTGGCCTACGGTAAGAGCATCACCGATGCCTGCATCGGCTGGGAAGATACCGATGCTCTGTTACGTCAACTGGCGAATGCAGTAAAAGCGCGTCGCGGGTAAGGTTTAATTG‑TCG‑GATGCGCCGTC‑AGAGTGGCGTATCC‑GATGAATCACCACAGGCCTGATAAGTCGCGCAGCGTCGCATCAGGCAATGTGC‑TCCATTGTTAGCAACAAAAAAGCCGACTCACTTGCAGTCGGCTTTCTCATTTTAAACGAATG‑ACGTTTACTTCGCTTTACCCTGGTTTG‑CAA‑CCGCCGCTGCTTTCGCTGCGATCTCGTCAGCATTACCCAGATAATAGCGTTTCAGCGGTTTGAAATTCTCGTCGAACTCATACACCAGCGGCACGCCAGTCGGGATATTAAGCTCAAGAATCTCTTCTTCGCTCATGTTATCAAGATATTTCACCAGCGCACGTAAA > NC_000913/786542‑787035 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |