| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 540,558 | 0 | T | G | 29.6% | 80.0 / 13.8 | 57 | intergenic (+50/‑7) | allB/ybbY | allantoinase/putative purine transporter |
| Reads supporting (aligned to +/- strand): ref base T (12/26); new base G (16/0); total (31/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.69e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.85e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTCTTCATTCAGCCGAATAGCAGCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCTGT > NC_000913/540311‑540796 | gTCTTCATTCAGCCGAATAGCAGCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAtgtgtg < 2:387845/251‑1 (MQ=255) cattcaGCCGAATAGCAGCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTAt < 1:545190/251‑1 (MQ=255) aTAGCAGCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑GTTATGTTCAAttttt > 1:305916/1‑250 (MQ=255) gcagcTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGGGTG‑TTTTTGTTCAAtttttc > 1:566294/1‑247 (MQ=255) cAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGCAAGGTCAATTTATCCTTAACCATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GGTAAGGTGGG‑TTTATGTTCACATTTGCAGTCCGCCGCGGAAGccc > 1:255900/1‑250 (MQ=255) gATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGGG‑TTTATGTTTAATTTTTCAGTCAGCCGCGAAAGCCTGTTATc > 1:300332/1‑250 (MQ=255) aaTATCGCAACAAAGGCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCGTTTTCCC‑GGTAAGG‑GTGGTTTGTGTTTTATTTTGCCGTCAGcagggaaaccatggtttacgggtgtt > 2:464232/1‑226 (MQ=255) atatCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCGTTCTCCG‑GGTAAGGTGGG‑TTTTTGTTCAATTTTGCAGTCAGCCGCGGAAGCATGttgttatgttttt > 2:456157/1‑239 (MQ=255) tatCGCCACAAAGTCAGCCCGTATGTTGGACGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGGGATTTACGACATTGAACAGGGCATCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCATTGCGGCGGGCAGTCTCCG‑GTTAAGGGGGG‑TTTGTGGTACATTTTGCAGTCAGCCGCGAAAGGAGGTTATCAGGAGTTc > 1:416180/1‑249 (MQ=255) ccaacaAAGGCAGCCCGTATGTTGGCCCTACCAATGGCGCGCGTAACACGAAAACCATAGTTCGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCGGTTGCGCCGAAATGTCACTTTATCCTTAAACATCAGCAGTAATCTGGCCCCGGCAATGCCCGTCCTTGCGGCGGGCATCCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTGTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGt < 2:160973/248‑1 (MQ=255) ccACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGtt < 2:218543/251‑1 (MQ=255) cAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTAt < 2:156067/251‑1 (MQ=255) ccttattttGGCCGTTCCATTGGCGCGCTTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCGCTGCAATTCCCGTCCTTGCGGCGGGCTTTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCTGCGAAAGCCTGTTATCAGGATGTCAGTGGTTTTGCTTTAttttt < 2:501042/244‑1 (MQ=255) tATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGGGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGGTTTTCtttttttttttc > 1:504304/1‑249 (MQ=255) aTTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTACCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCACCTGCAATGCCCGCCCTTGCGGCGGGCATTCTCCG‑GATAAGGGGGG‑TTTATGTTTAAATTTGCCGGCCGACGCGAAAGCCTGGTATCAGAATTTCATTGGTTTTTCTTTATTTTTTGCAACACGGGTGTGGtt > 1:384780/1‑251 (MQ=255) aTCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCt < 1:149072/250‑1 (MQ=255) cGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGACGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCAATCTCCG‑GGTTAGGGGTG‑GTTATGTTTCATTTTGCCGGCCGCCGCCGAAGCCAGTTATTCGGGTTTTAGTGGGTTTTCTTTTTTTTTTTTAACCCGGTTGGGGGTTCTCCTAcacgtcttt > 1:327912/1‑243 (MQ=255) gAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCa < 1:520302/169‑1 (MQ=255) gAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCCTCG‑GTTTAGGTGTG‑TTTTTGTTTAATTTTGCAggca > 2:520302/1‑166 (MQ=255) aaaaCCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTCTCCG‑GTTTAGGGGGG‑TTTATGTTCAATTTTGCCGTCCGCCGCGAAAGCCTGTTTTCAGGGTTTCAGTGGTTTTTCTTTTTTTTTTTCAACACGGTTGGGGTTCCTCCTACGCCACTTTCt > 2:110312/1‑251 (MQ=255) aaaaCCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCt < 1:685/251‑1 (MQ=255) gtgatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCaaaat < 1:576172/251‑3 (MQ=255) gatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGTAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTCTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTa < 1:52720/250‑1 (MQ=255) gatTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTa < 2:144428/250‑1 (MQ=255) ttACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGGGTG‑TTTTTGTTTCATTTTGCAGTCAGCCGCGAAAGCCTGGTTTTAGGATTTCAGTGGGTTTTCTTTATTTTTTGCAACACGGTTGTGGTTTCTCCTACGCTACTTTCTTCTTTTCAGTTGCCGCAAAGTAGCCt > 1:131065/1‑251 (MQ=255) tACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTATGCTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCt < 2:160049/250‑1 (MQ=255) aCGACATTGAACAGGGCTGCCCTGTTGCGACGAAAGGTCAATGTATCCTGAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TGTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTGTATTTTTAGCAACACGGTTGTGGTTCCTCCTACGCTCCTGTCTGCTGTTCAGTTGCCGCAAAggggcctg < 2:255900/250‑8 (MQ=255) cGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GGTAAGGTGTG‑TTTATGTTTAATTTTGCAGTCAGCCGCGAAAGCCTGGTATTAGGGTTTCAGTGGTTTTTTTTTTTTTTTTGCAAAACGGTTGTGGTTTCTTCTACGCTTCTTTCTGCTTTTTAGTTTCCGCAAAAAAGCCTGCt > 1:180208/1‑251 (MQ=255) gACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTTTGTTCAATTTTTCCGTCAGCCGCGAAAGCCTGTTATCCGGATTTCAGTGGTTTTTCTTTTTTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTTCTTTTCAGTTTCCGCAAAGTAGCCTGCtt > 1:20008/1‑251 (MQ=255) aTTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACg < 2:300332/251‑1 (MQ=255) ttGAACAGGGCTTCCCTGTTGCGCCGAAAGGGCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GGTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGGTTTTCTTTTTTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTTAGTTGCCGCAAAGGAGCCTGCTTaagc > 1:191066/1‑248 (MQ=255) aaCAGGGCTTTCCTGTTGCTCCGAAAGGTCAATTTATTCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCGTGCGGCGGGCATTCTCCG‑TTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTGCGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCa < 1:335470/251‑1 (MQ=255) tGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTTAGGGGTG‑TTTATTTTCCATTTTGCAGTCAGCCGCGAAAGCCTGTTTTCCGGATTTCTGTGGTTTTTCTTTATTTTTTGTCACACGGTTGTGGTTCCTCCTCCGCTACTTTCTTCTTTTCTTTTGCCGCAAAGTAGCCTGCTTACCCTccccccatattctttttt > 2:91264/1‑234 (MQ=255) gcctaaaGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGc < 2:425118/247‑1 (MQ=255) cGAAAGGTCAATTTATCCCTAAACATCAGCAGTAATCTTGCCCCTGCAATGCCCGGCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCATTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTa < 2:284028/251‑1 (MQ=255) aaGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGGTTTTTTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTTCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTAccc > 1:126768/1‑250 (MQ=255) ggTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCCTTCTCCC‑GGTAAGGGGTG‑TTTTTGTTCCATTTTTCAGTCAGCCGCGAAAGCCCGTTATCAGGGTTTCAGTGGTTTTTCTTTTTTTTTTGCAACACGGTTTTGGTTCCTCCTACGCTACTTTCTGCTTTTTAGTTGCCGCAAAGGAGCCTGCTTACGCTCACCCACTATGCTTTTCTTTCTACCGcc > 2:162301/1‑250 (MQ=255) cAATTTATCCTTAAACATCAGCAGTCATCTGGCCCCTACAATGCCCGTCCTTCCGGCGGACATTCTCCGCGTTC‑GGAGTG‑CTTATGTTCAATTTTTCAGCCAGACCCGGCAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTTCAACCCCGTTGTGGTTCCTCCTTCGCTCCTTTCTTCTTTTCAGTTGCCGCAAAGAATCCTGCTTACGCTCACGCAATATGGTTTTTTTTCTACCGCACTg > 2:293564/1‑251 (MQ=255) cAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCt < 2:529521/220‑1 (MQ=255) cAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGGGTG‑TTTTTGTTCAATTTTGCAGTCCGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTTCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTTCTTTTTAGTTGCCGCCAAGTAGCCTGCTTACGCt > 1:529521/1‑220 (MQ=255) ccTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCtt < 1:162301/251‑1 (MQ=255) ttAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTTTCCC‑GTTACGGGGTG‑TTTTTGTTCAATTTTTCAGTCCGCCGCGAAAACCCGTTATCAGGGTTTTTGTGGGTTTTCTTTTTTTTTTGCAACACGGTTGTGGTTTCTCCTACGCTACTTTTTGCTTTTCAGTTGTCCCAAAGTAGCCTGCTTACGCCCACGCACTATTATTTTTTTTCTACCGCAcccgccttctttt > 2:139117/1‑239 (MQ=255) aCATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTTTCCG‑GTTAAGGGGTG‑TTTATGTTCCATTTTGCAGTCAGCCGCGAAAGCCTGTTCTCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAAAACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTTCTACCGCACTGGCCTGCTTCGCTcc > 1:47346/1‑250 (MQ=255) cATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCACTCTCCG‑GTTAAATTGGG‑TTTATGTTCCATTTTGCCGTCCACCGGGCAAGCACGTTCTCAGGGTTTTAGTGGGTTTTCTTTATTTTTTGGAACCCGGTTGTGGTTCCTCCTACCCTCCTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCCCGCAATCTTCTTTTCTTGCCACCGCACCGGCCTGcatctccc > 2:57380/1‑242 (MQ=255) cagcagTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTTAGGGGTG‑TTTTTGTTCAATTTTGCAGTCTGACGCGAAAGCCTGTTATCAGGATTTCCGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTAAGCTCCTTTCTGCTTTTCAGTTTCCTCAAAGTAGCCTGCTTACGCTCCAGCAATATGCTTTTCTTTCTACCGCCCTGGCCTGCTTCGCTCAGGCg > 1:576957/1‑251 (MQ=255) cagTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGAGGG‑GTTTTGTTCAATTTTGGAGTGAGCCCCGGAAGGCTGTTATCAAGATTTCAGTGGGTTTTCTTTATTTTTTGCCACACGGTTTTGGGTCATTCTACGCTACTTTc > 1:565569/1‑163 (MQ=255) cagTAATCTGGCCCCGGCAATGCCCGGCCTTGCGGCGTGCATCCTCCG‑GTGAAGGTGTG‑GTTATGGTCAAGGTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTGTTTCTTTATTTTTTGCAACACGGTTGCGCTTCCTCCTACGCTCCTTTc < 2:565569/163‑1 (MQ=255) gTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTg < 1:321143/251‑1 (MQ=255) gTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGGGTG‑TTTATGTTCAAATTTGCAGACAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTCCTTCGCTCAGGCGttttt > 1:513537/1‑250 (MQ=255) tAATCTGGCACCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTTTCAGGATTTTAGTGGTTTTTCTTTTTTTTTTTCAACACGGGTTTGGTTCCTCCTACGCTACTTTCTGCTTTTTAGTTGCCGCCAAGTAACCTGCTTACGCTCACGCAATATGCTTTTTTTGCTACCGCCCTGGCCTGCTTCGCTCAGGCGTTTTgt > 1:459113/1‑250 (MQ=255) ggCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCa < 1:326823/250‑1 (MQ=255) gCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTACGGTGTG‑TTTATGTTTAATTTTGCCATCCGCCGCGAAAGCCTGTTATCCGGATTTCATGGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAATAGCCTGCCTACGCTCACCCCATATGCTTTTCTTTCTACCGCCCTGGCCTGCTTCCCTCAGGCGTTTTTCGGTCAtc > 1:394881/1‑251 (MQ=255) gTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGGGGG‑TTTATGTTCAATTTTTCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATgg > 1:274100/1‑251 (MQ=255) tCCTTGCGGCGGGCATTCTCCG‑GTTAAGGGGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTTAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCCGGCGTTTTTCGGTCCTCGTCGCGCTATTATggg > 1:299734/1‑250 (MQ=255) ggcggGCCTTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGAGTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTGGTGGTTCCTCCTACGCTACTTTCGGCTGTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCGCTGGCCTGCTTCGCTCAGGCGTTGTGCGGTCATCGTCGCGTTATTATGGAATGGCCa < 2:296209/251‑1 (MQ=255) tctcCG‑GTTAAGGTGTG‑TTTATGTACAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGGTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTGTCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCt < 2:204055/250‑1 (MQ=255) ccG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCtg < 1:198621/248‑1 (MQ=255) ccG‑GTTAAGGTGTG‑TTTATGTTCAATTGTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACTCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTTGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCtgt < 2:314872/249‑1 (MQ=255) | GTCTTCATTCAGCCGAATAGCAGCTATGTTCTTACCAATGACGATCTGGAATATCGCCACAAAGTCAGCCCGTATGTTGGCCGTACCATTGGCGCGCGTATCACGAAAACCATCTTACGTGGTGATGTGATTTACGACATTGAACAGGGCTTCCCTGTTGCGCCGAAAGGTCAATTTATCCTTAAACATCAGCAGTAATCTGGCCCCTGCAATGCCCGTCCTTGCGGCGGGCATTCTCCG‑GTTAAGGTGTG‑TTTATGTTCAATTTTGCAGTCAGCCGCGAAAGCCTGTTATCAGGATTTCAGTGGTTTTTCTTTATTTTTTGCAACACGGTTGTGGTTCCTCCTACGCTACTTTCTGCTTTTCAGTTGCCGCAAAGTAGCCTGCTTACGCTCACGCAATATGCTTTTCTTGCTACCGCACTGGCCTGCTTCGCTCAGGCGTTTTGCGGTCATCGTCGCGCTATTATGGAAGGGCCAGGTGGCCTGT > NC_000913/540311‑540796 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |