| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 730,748 | 0 | T | C | 30.8% | 90.0 / 10.9 | 54 | I389T (ATC→ACC) | rhsC | rhs element protein RhsC |
| Reads supporting (aligned to +/- strand): ref base T (35/1); new base C (0/16); total (35/19) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.64e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACAGTCCGGATGTGGTGACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCAC > NC_000913/730526‑730995 | gCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTc > 1:573538/1‑251 (MQ=255) ggcgCACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGACATC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑AACATCACCGACAGCCTT‑AACCGCCGTGAAGTCCTGCACACGCAggg > 2:360127/1‑251 (MQ=255) ggcgAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAggg > 1:411910/1‑251 (MQ=255) gAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGGGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTg > 1:446754/1‑250 (MQ=255) gcggTTTAGGACCGCAGCAATACACGGTTGCGCAGTTTTACTTACGATAATAAATACCGGGGCCGGATGGTGGCGCCCCGTCCCCGGGGCCGACCGGAAATC‑TTTTACCGTTACGA‑CAGCGACGGGGGGGGGACAGAACACCTAACCCCGGCAGGTTTAATTTCCCCGTATCAGTATGAGAAGGACCGCTTC‑CCCACCACCGACAGCCTA‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCt < 1:445855/251‑1 (MQ=255) tATGACCGCAGCAATACACAGGAGCGAAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGAACGGACATC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGAATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGACCACGCAGGGCGACGGCGGGCTGAAGCg > 2:513181/1‑251 (MQ=17) aTGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCgg > 2:524459/1‑251 (MQ=255) cagcaATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGgtggtg > 2:360441/1‑250 (MQ=255) aaTACACCGGAGCGCAGCTTTACTTACGATGATACATAACGGGGCCAGATGCTGGCGCACCGTCACACGGGCCGACCGGAAATC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCCTC‑CCCATCACCGACAGCCTG‑ACCCGCCGTGAAGTCCTGCACACGCCGGGCGAAGGCGGGCTGAAGCGGGTGGTGaaaa > 2:58280/1‑250 (MQ=14) gTGCGAAGCTTTACCTACGATGATAAATACCGGCGCCGGATGGTGGCGCACCGTCACACGGGACGACCGGAAATC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGCGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCCTC‑ACCATCACCGACAGCCTG‑AAACGCCGGGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAACAAGGAACCcgc > 2:85032/1‑251 (MQ=14) gcgcAGCTTTACTTACGATGATAAATACCGGGGACGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑ACCCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCgg > 1:177903/1‑251 (MQ=255) cttacTATGATAAATACAGGGGCCGGACGGTAGCTCAAAGTCAAACAGGCAGAACGGAAATC‑TGTTACCGTTACGA‑CAGCGACGGGAGGGTAACAGAACAGATAAAACCGGCAGGCTTAAGGTACACGTATCAGTGTGAGACGGACCGCATC‑AGCATAACCGACAGCCTG‑AACCGCCGTGAAGACCTGCACACGCAGGGTGAAGGCGGTCTGAAGAGGGTGGTGAAACAGGAACACGAGGCCGGCAGCGTc > 2:518108/1‑251 (MQ=255) aggagaaaaaaacccGGGGCGGGAGGGGGGCGCACCGTCAAAGGGGCCGACGGGAAATC‑TGT‑ACCGGTAAGAACGGCGAGGGGGGGGGGAAAGAACAGAAAAACCCGGAAGGCTTAAGTAACACGTAAAAGTAGGAGAAGAACCGAATC‑CCAAACACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACg < 1:72616/238‑1 (MQ=9) cGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACCCGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGc > 1:250446/1‑251 (MQ=255) cGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGc > 1:98341/1‑251 (MQ=255) tACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGGGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGCCAGCGGCACGCAGAGTCAGtt > 1:452451/1‑251 (MQ=255) cccgggggCGGGATGGGGGCGCCCCGTCACCGGGGCCGACCGAAAATT‑TGTTCCGGTTACGA‑CAGCGAGGGGCGGGTGAAAAAACAGCAAACCCCGGCGGGCTAAAGTAACCCGTATCAGTAGGAGAAGGACCGCACC‑CCAACCCCCGACAGCCGG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGtt < 1:62458/247‑1 (MQ=9) ccgggggcggggggggggCGCGCCGTCACGGGGGCCGACCGTAAATC‑TGTACCCGTTACGA‑CAGGGAGGGGGGGGTGAAAGAAAAGCAAACCCCGGCGGGCTTAAGTTACACGTATCAGTAGGAGAAGGACCGCATC‑ACCACCCCCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGtt < 1:277004/234‑1 (MQ=14) ggggCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGAc > 1:551969/1‑251 (MQ=255) gggcgggggggggccgcACCGTCAAGCGGGCAGACCGAAAATT‑GGTTCCCGTGACGA‑CGGCGAGGGGGGGGAGAAAGAACAGCAAACCCCGCCAGGCTTAAGTAACACGTATAAGTATGAGAAGGACCCCACC‑CCAACCACCGACAGCCTA‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCTTCACGCAGAGTCAGTTTGAcg < 2:40526/237‑1 (MQ=9) ggATGGTGGCGCACCGTCACACGGGCCGACCGGAAATC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTg > 1:488888/1‑251 (MQ=255) ggtggCGCACCGTCACACGGGCCGACCGGAAATC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGc > 2:378483/1‑250 (MQ=255) tggCGCACCGTCACACGGGCCGACCGGAAATC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGGGGGCAgg > 2:294728/1‑251 (MQ=255) ggccccccgacccaggggCCGCCCGGAAATC‑TGTTACCTTTACGA‑CAGCGACGGGGGGGTGACAGAACAGCAAAACCCGGCAGTCTTAATTTACACGAATCATAAGGAGAAGGCCCGCACC‑CCCACCCCCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAgg < 1:483042/235‑1 (MQ=14) gggggCCGAC‑GGAAATCCTGTCCCCGTGACGA‑CGGCGAGGGGGGGGTGAAAAAAACGCTAACCCCGGCGGGTTTAAGTTCCGCGTATAAGTATGAGAAGGCCCGCACC‑CCCACCCCCGACAGCCGG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGAc < 2:219104/249‑1 (MQ=9) cGGGCCGACCGGAAATC‑TGTTACCGTTACGC‑CCGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACg > 1:474462/1‑251 (MQ=255) cGGGCCGACCGGAAAAC‑TGATAACGATACGA‑CAGCGACGGGCGGGCGACAGAACAGCTAAACCCGGAAGGCTTAAATTAAACGTATCAGTATGAGAAGGCCCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGCGAAGGCCTGCACACGCAGGGTGAAGGCGGGCTGCAGCGGGTGGGGAAAAAGGAACACGCGGACGGAAGCGTAACGCAGAGTCAGTTTGAAGCGGGGGGACGGCCCAGGGCACAGACg > 2:518932/1‑251 (MQ=255) cGACCGGAAATC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGCGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGc > 1:28774/1‑251 (MQ=255) cgaaaaTC‑TGTTCCCGTAACGA‑CAGCGACGGGGGGGTGACAGAACAGCAAACCCCGGAGGGCTTAATTTCAACGTAACAGTAGGAAAAGGCCCG‑ATCCACCACCCCCGACGGCCGG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCgca < 1:383081/248‑1 (MQ=14) aaaTC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCgcaggc > 1:67233/1‑251 (MQ=255) tGTTACCGTTACGA‑CAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCGCCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCGGcaggcaggcc > 1:94367/1‑249 (MQ=255) ccccgtacggacgggggcgggcgggAGAAAGAACAGCAAACCCCGGCAGGCTAAAGTTACACGTATCAGTAGGAGAGGCACCGCACC‑CCCACCACCGACGGCGTA‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGacaac < 2:79027/234‑1 (MQ=14) ggtaccgtcgggggcgggggggTGAAAAAACAGCAAAACCCGCCAGGCTAAATTAACACTGACGAGTATGAGAGGGCCCGCACC‑ACCACCACCGACA‑CCTGTAACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGAGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGa < 2:307686/237‑1 (MQ=14) ttACGA‑CAGCGACGGGCGGGTGACAGAACGGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAAt > 1:176265/1‑251 (MQ=255) cGA‑CAGCGAGGGGGGGGTAAAAGAACAGCTAAACCCGGCAGGCTAAAGTTCCCCGTATCAGTAGGAGAAGGACCGAACC‑ACCACCACCGACAGCTTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACa < 1:13949/251‑1 (MQ=14) cagcgaggggggtgggACAAAACAGCTAACCCCGGAAGGCTAAAGTTACGCATTTCAGTATGGAAAGGACCGCAGC‑GCCAACCCCGACAGCGTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACAGTc < 1:544491/236‑1 (MQ=14) aGCGAAGGGCGGGTGACAGAACAGCTAAAACCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGAACGCATC‑AACATAACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGAGGTGACCAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCAGCAGGCAGGAACACAGAATACAGTcc > 2:543974/1‑251 (MQ=14) gcgaggggggggtaaaaGAACAGCAAACCCCGGCAGGTTAAATTTACACGTACCAGTAGGAGAAGGCCCCCATC‑CCCATCCCCGACAGCCGA‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACAGTCCg < 1:425532/235‑1 (MQ=14) gggcgggTCAAAGAACAGCAAAACCCGGCAGGTTTAAGTTACACGTAACAGTATGAGAAGGACCGCATC‑CCCACCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCAAAGACGGATGCCGCAGGCAGGACAACAGAATACAGTCCGGAtgt < 1:126746/251‑1 (MQ=14) gggTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGCGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACAGTCCGGATgtgggg > 2:80214/1‑249 (MQ=255) gggTGAAAAAACAGCAAAACCCGGCAGGCTAAATTAACACGTAACAGTATGAAAAGGCCCGCACC‑ACCACCACCGAAAGCCGG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACAGTCCGGATgtggtg < 1:360127/251‑1 (MQ=14) ggggaaaGAACAGCTAACCCCGGCAGGCTTAAGTTCCACGTATCAGTATGAAAAGGCCCCCATC‑ACCACCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACAGTCCGGATGTGGTGa < 1:524459/245‑1 (MQ=14) gACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGAGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACAGTCCGGATGTGGTGACgg > 1:581050/1‑251 (MQ=255) aaCAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACAGTCCGGATGTGGTGACGGGCCtc > 1:264062/1‑251 (MQ=255) aaCCCGGCAGGCTTAAGCTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACAGTCCGGATGTGGTGACGGGCCTCATCAcgcg > 1:19663/1‑251 (MQ=255) ccGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCCGGACAACAGAAGACAGTCCGGATGTTGTGACGGGCCTCATCCCGCGCAt > 2:259156/1‑251 (MQ=255) ggcgaaaGTAACACGGATCAGTATGAAAGGGACCGCATC‑GCCTCCACGGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGGCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACAGTCCGGATGTGGTGACGGGCCTCGTCACGCGCATcaccac < 1:482706/246‑1 (MQ=14) cTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACAGTCCGGATGTGGTGACGGGCCTCATCACGCGCATCACCACGc > 1:280088/1‑251 (MQ=255) acGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACAGTCCGGATGTGGTGACGGGCCTCATCACGCGCATCACCACGCCGGATGGc > 1:192949/1‑249 (MQ=255) agctggaggagaGGGACCCCAAC‑ACCACCACCGACAGCAGG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACAGTCCGGATGTGGTGACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGc < 1:379757/242‑1 (MQ=14) cAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACAGTCCGGATGTGGTGACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATc > 1:324825/1‑251 (MQ=255) gtaggagaAGGCCCGCATC‑CCCACCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACAGTCCGGATGTGGTGACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCgg < 1:21524/247‑1 (MQ=255) ggACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGCAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACAGTCCGGATGTGGGGACGGGCCTCATCACGCGCATCACCACGCCGGATGGCTGGGCATCGGCGTTTTACt > 2:53875/1‑251 (MQ=255) gCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACAGTCCGGATGTGGTGACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAac > 1:122863/1‑251 (MQ=255) aatc‑accaaccccGACAGCCGA‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACAGGCCGGATGTGGTGACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAacc < 2:385733/250‑1 (MQ=255) atcaccGACAGCCTG‑AACCGCCGTGAAGTCCTGCACAAGCAGGGCGAAGGCGGGCTGCAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACAGTCCGGATGTGGAGACGGGCATCATCAAGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACcaccac > 2:578967/1‑249 (MQ=255) | GCTGGACGCCCCGCGGCGAACTGGCGGCGGTGTATGACCGCAGCAATACACAGGTGCGCAGCTTTACTTACGATGATAAATACCGGGGCCGGATGGTGGCGCACCGTCACACGGGCCGACCGGAAATC‑TGTTACCGTTACGA‑CAGCGACGGGCGGGTGACAGAACAGCTAAACCCGGCAGGCTTAAGTTACACGTATCAGTATGAGAAGGACCGCATC‑ACCATCACCGACAGCCTG‑AACCGCCGTGAAGTCCTGCACACGCAGGGTGAAGGCGGGCTGAAGCGGGTGGTGAAAAAGGAACACGCGGACGGCAGCGTCACGCAGAGTCAGTTTGACGCGGTGGGCAGGCTCAGGGCACAGACGGATGCCGCAGGCAGGACAACAGAATACAGTCCGGATGTGGTGACGGGCCTCATCACGCGCATCACCACGCCGGATGGCAGGGCATCGGCGTTTTACTATAACCACCAC > NC_000913/730526‑730995 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |