mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 96 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,908,989 | 0 | G | A | 71.4% | 17.5 / 12.2 | 21 | G22E (GGA→GAA) | yobH | uncharacterized protein YobH |
| * | NC_000913 | 1,888,549 | 0 | G | A | 68.2% | 16.2 / 12.2 | 22 | P400S (CCA→TCA) | fadD | long‑chain‑fatty‑acid‑‑CoA ligase |
| * | NC_000913 | 3,790,176 | 0 | G | A | 66.7% | 6.9 / 10.0 | 15 | intergenic (‑95/+144) | waaH/tdh | UDP‑glucuronate:LPS(HepIII) glycosyltransferase/threonine dehydrogenase |
| * | NC_000913 | 3,884,742 | 0 | G | A | 66.7% | 9.5 / 11.2 | 18 | D84N (GAT→AAT) | rnpA | RNase P protein component |
| * | NC_000913 | 4,505,500 | 0 | C | T | 66.7% | 7.0 / 12.2 | 18 | L72L (CTG→TTG) | nanY | 2,7‑anhydro‑N‑acetylneuraminate hydratase |
| * | NC_000913 | 579,457 | 0 | A | G | 65.5% | 28.9 / 19.1 | 29 | I46I (ATT→ATC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 3,490,340 | 0 | C | T | 64.7% | 7.8 / 10.0 | 17 | G164S (GGT→AGT) | pabA | aminodeoxychorismate synthase subunit 2 |
| * | NC_000913 | 579,385 | 0 | A | G | 63.3% | 27.4 / 22.9 | 31 | N70N (AAT→AAC) | ybcV | DUF1398 domain‑containing protein YbcV |
| * | NC_000913 | 1,430,115 | 0 | C | T | 63.2% | 7.5 / 15.8 | 19 | S356F (TCC→TTC) | stfR | putative prophage side tail fiber protein StfR |
| * | NC_000913 | 670,328 | 0 | G | A | 60.0% | 2.4 / 17.0 | 20 | P82L (CCC→CTC) | nadD | nicotinate‑nucleotide adenylyltransferase |
| * | NC_000913 | 3,481,760 | 0 | C | T | 60.0% | 0.9 / 11.0 | 15 | L158F (CTT→TTT) | yheS | putative ATP‑binding protein YheS |
| * | NC_000913 | 3,751,893 | 0 | G | A | 60.0% | ‑1.9 / 14.0 | 15 | intergenic (‑25/‑99) | yiaT/yiaU | outer membrane protein YiaT/putative DNA‑binding transcriptional regulator YiaU |
| * | NC_000913 | 3,812,327 | 0 | G | A | 60.0% | 2.0 / 10.1 | 15 | A78V (GCC→GTC) | yicR | RadC‑like JAB domain‑containing protein YicR |
| * | NC_000913 | 4,323,136 | 0 | C | T | 60.0% | ‑3.6 / 11.4 | 18 | intergenic (‑714/+200) | phnF/phnD | putative transcriptional regulator PhnF/phosphonate/phosphate ABC transporter periplasmic binding protein |
| * | NC_000913 | 566,173 | 0 | C | G | 59.3% | 18.8 / 30.8 | 27 | intergenic (‑195/‑511) | intD/renD | putative integrase/protein RenD |
| * | NC_000913 | 376,958 | 0 | G | A | 58.3% | ‑3.8 / 10.7 | 12 | A63T (GCG→ACG) | yaiL | DUF2058 domain‑containing protein YaiL |
| * | NC_000913 | 1,634,597 | 0 | C | A | 57.9% | ‑5.1 / 17.0 | 19 | V97F (GTT→TTT) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 1,634,661 | 0 | C | G | 57.1% | ‑5.6 / 21.6 | 21 | T75T (ACG→ACC) | tfaQ | putative tail fiber assembly protein TfaQ |
| * | NC_000913 | 520,304 | 0 | C | T | 56.2% | 1.5 / 10.4 | 16 | S191F (TCC→TTC) | ybbA | putative ABC transporter ATP‑binding protein YbbA |
| * | NC_000913 | 566,205 | 0 | T | C | 55.6% | 7.0 / 26.0 | 28 | intergenic (‑227/‑479) | intD/renD | putative integrase/protein RenD |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4522938 | 15 (1.150) | 3 (0.240) | 3/278 | 1.1 | 17.0% | coding (1157/1968 nt) | yjhG | D‑xylonate dehydratase |
| ? | NC_000913 | = 4522995 | 15 (1.200) | coding (1100/1968 nt) | yjhG | D‑xylonate dehydratase | |||||