| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,505,500 | 0 | C | T | 66.7% | 7.0 / 12.2 | 18 | L72L (CTG→TTG) | nanY | 2,7‑anhydro‑N‑acetylneuraminate hydratase |
| Reads supporting (aligned to +/- strand): ref base C (2/4); new base T (7/5); total (9/9) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.20e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.01e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCTTTATGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGCCCGTGAATTGCAGTGTATCAATATGTCAAGCTTGGATGCTTTAGTCTCAAGTAAATTAGTCGATTGCGTGATCGTAGCCACCCCAAATTATCTGCATAAAGAACCAGTAATTAAAGCAGCAAAGAATAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAATGGGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTA > NC_000913/4505282‑4505725 | gCTTTATGAGTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGCCCGTGAATTGCAGTGTATCAATATGTCAAGCTTGGATGCTTTAGTCTCAAGTAAATTAGTCGATTGCGTGATCGTAGCCACCCCAATTTATCTGCATAAAGAACCATTAATTAAAGCAGCAAAg < 1:99759/251‑1 (MQ=255) gttggTTACTTTGGAGCTGAATTAGCTCGTTTTATGAAGATGCATGATAATGCAAAAAATACATGTGTATACGATCCTGAAAATGGAGAAAATATTGCCCGTGAATTGCAGTGTATCAATATGGCAAGCTTGGATTCTTTAGTCTCAAGTAAATTAGTCGATTGCGTGATCGTAGCCACCCCAAATTATTTGCATAAAGAACCATTAATTAAAGCAGCAAAGAATAAGAAGCATGTTTTTTGTGaaaaan < 1:58649/250‑2 (MQ=255) gcgcTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGCCCGTGAATTGCAGTGTATCAATATGTCAAGCTTGGATGCTTTAGTCTCAAGTAAATTAGTCGATTGCGTGATCGTAGCCACCCCAAATTATTTGCATAAAGAACCAGTAATTAAAGCAGCAAAGAATAAGAAGCATGGTGTTTGTTAAAAACCAATTGCATTAAGt < 1:270036/251‑1 (MQ=255) gAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGCTCCTGAAAATGGAGAAAATATTGCCCGTGAATTGCAGTGTATCAATATGTCAAGCTTGGATGCTTTAGTCTCAAGTAAATTAGTCGATTGCGTGATCGTAGCCACCCCAAATTATCTGCATAAAGAACCAGTAATTAAAGCAGCAAAGAATAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATg > 1:102288/1‑250 (MQ=255) ttttATGAATATGCATGATAATGCAANAATTACNNGTNTATACGATCCTGAAAATGGNGANNNTNNNGNACGTGNATNNCAGTGTATCNATATGTCAAGCTTGGATGCTTTAGTCTCAAGTAAATTAGTCGATTGCGTGATCNTAGCCCCCCNNAATTATCTGCATAAAGAACCANTAANNANNGNAGCnaan > 2:73187/1‑192 (MQ=255) cAAAAATTACATGTGTATACGATACTGAAAATAGAGAAAATATTGCCCGTGAATTGCAGTGTATCAATATGTCAAGCTTGGATGCTTTAGTCTCAAGTAAATTAGTCGATTGCGTGATCGTAGCCACCCCAAATTATTTGCATAAAGAACCAGTAATTAAAGCAGCAAAGAATAAGAAGc > 1:116581/1‑180 (MQ=255) ccTGAAAATGGAGAAAATATTGCCCGTGAATTGCAGTGTATCAATATGTCAAGCTTGGATGCTTTAGTCTCAAGTAAATTAGTCGATTGCGTGATCGTAGCCACCCCAAATTATCTGCATAAAGAACCAGTAATTAAAGCAGCAAAGAATAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCg < 1:73187/250‑1 (MQ=255) gCCCGTGAATTGCAGTGTATCAATATGTCAAGCTTGGATGCTTTAGTCTCAAGTAAATTAGTAGATTGCGTGATCGTAGCCACCCCCAATTATTTGCATAAAGAACCAGTAATTAAagccgaaaag > 1:288175/1‑119 (MQ=255) ncAGTGTATCAATATGTCAAGCTTGGATGCTTTAGTCTCAAGTAAATTAGTCGATTGCGTGATAGTAGCCACCCCAAATTATTTGc > 1:37480/2‑86 (MQ=255) cAGTGTATCAATATGTCAATCTTGGATTCTTTAGTCTCAAGTAAATTAGTCGATTTCGTGATCGTAGCCACCCCAAATTATCTGCATAAAGAACCAGTAATTAAAGCAGCAAAGAATAAGAAGCATGTTTTGTGTGAAAAACCAATTGCATTAAGTTATg < 1:109024/160‑1 (MQ=255) cTTTAGTCTCAAGTAAATTAGTCGATTGCGTGATCGTAGCCACCCCAAATTATTTGCGTAAAGAACCAGTAATTAAAGCAGAAAAGACTAAGACGAATGTTTTTTGTGCAAAAACAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTgg > 1:170260/1‑172 (MQ=255) aTTAGTCGATTGCGTGATCGTAGCCTCCCCAAATTATTGGCATAAAGAACCTGTAATTAAAGCAGCAAAGAATTAGAAGTATGGTTGTTGTGAAAGAGCAATTGCATTAATTTGTGATGATTGGGTGGATATGGGGAAATCTTGTGAAGAGTCTTCTGTGACCTTTATGTTCGGGCATATTATGAATTTTTTCAATGGGGTTCAatat < 1:165618/208‑1 (MQ=255) gCGTGATCGTAGCCACCCCAAATTATCTGCATAAAGAACCAGTAATTAAAGCAGCAAAGAATAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTGATGGCCGGGCAGATTATGAATTTTTTCAATGGGTTTCAATAGGCACGGAAGTTAATTAAAGAAGGTGTTATCggn < 1:36630/230‑2 (MQ=255) gttcgcGTAGCCACACCAATTTATTTGCATAAAGCACCAGTCATTAAAGCAGCCAAGAATCAGAAGAATGTTTTTTGTGGAAAAACAATGGCATTAAGTTATGAGGATTGTGTGGATATGGTCAAAGCGTGTACAGATGCTGGTGTGACATTTATGGCCGGGCATATTATGAATTTTTTCAATGGGGATCAATATGCACGGACGTTCATTAACGAAGGTGTTATAGGCGCAATATTATCATGTCATACTa > 1:164903/6‑250 (MQ=255) tGATCGTAGCCACCCCAAATTATTTGCATAAAGAACCAGTAATTAAAGCAGCAAAGAATAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAATGGGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCg < 1:13297/228‑1 (MQ=255) tGATCGTAGCCACCCCAAATTATTTGCATAAAGAACCAGTAATTAAAGCAGCAAAGAATAAGAAGCATGTTTTTTGTGAAAAACCAATNNCATTAANnt > 2:13297/1‑99 (MQ=255) aCCCCAAAGTATTTGCATAAAGAGCCAGTAATTAAAGCAGCAAAGAATAAGAAGCATGTTTATTGTTAAAAACCAATTGCAGTAAGTTAGGAAGATTGTGTGGATAGGATCAAAGCGTGTAAAGGAGCTTGTGTGACCTTGAGGGCGGGGCATATTAGGAGTTTTTTCAATGGGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGtt < 1:315879/210‑1 (MQ=255) ncccAAATTATTTGCATAAAGAACCAGTAATTAAAGCAGCAAAGAATAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGACGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAATGGGGTTCa > 1:62444/2‑178 (MQ=255) | GCTTTATGATTAATTATGGCGTTGTTGGTGTTGGATACTTTGGCGCTGAATTAGCTCGTTTTATGAATATGCATGATAATGCAAAAATTACATGTGTATACGATCCTGAAAATGGAGAAAATATTGCCCGTGAATTGCAGTGTATCAATATGTCAAGCTTGGATGCTTTAGTCTCAAGTAAATTAGTCGATTGCGTGATCGTAGCCACCCCAAATTATCTGCATAAAGAACCAGTAATTAAAGCAGCAAAGAATAAGAAGCATGTTTTTTGTGAAAAACCAATTGCATTAAGTTATGAAGATTGTGTGGATATGGTCAAAGCGTGTAAAGAAGCTGGTGTGACCTTTATGGCCGGGCATATTATGAATTTTTTCAATGGGGTTCAATATGCACGGAAGTTAATTAAAGAAGGTGTTATCGGCGAAATATTATCATGTCATACTA > NC_000913/4505282‑4505725 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |