| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4522938 | 15 (1.150) | 3 (0.240) | 3/278 | 1.1 | 17.0% | coding (1157/1968 nt) | yjhG | D‑xylonate dehydratase |
| ? | NC_000913 | = 4522995 | 15 (1.200) | coding (1100/1968 nt) | yjhG | D‑xylonate dehydratase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATATTGCCCACCGGGAAGGTGATAGTTGAGGTTAATCCGCGCGCTTTTGCTTGCTGCGGAGACATGATCACTTCGTCAGCGTTGATTTGTTCCTGATCGAGCAGGAGTTGCTTGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGATATGGCAACCTGCCTGGTGAGCAATTGCCGGGATGTGTAACAGCAGGTTTGTTGAACCACCGAACGCGGCATGGACCGTCATCGCATTCTCTATCGCTTTATCGGTGAGAATTTCCCGGGT > NC_000913/4522764‑4523236 | atatTGCCCACCGGGAAGGTGATAGTTGAGGTTAATCCGCGCGCTTTTGATTGCTGCGGAGACATGATCACTTCGTAAGCGTTGATTTGTTCCTGATCGAGCAGGAGTTGCTTGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGCGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGAAACATGACTTACGGca > 1:311981/1‑238 (MQ=255) gctgcGGAGACATTATCACTTCGTCAGCGTTGATTTGTTCCTGATCGAGCAGGAGTTGCTTGAACCGCGGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCATCGGGCTGCCGTTAACCGTCATAACGTCTTCATGCAACAAGCCGAGGCTGCGCAGAGGCAACATGACTTCCGGCACACCACCTGCCATAAATGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCAcc < 1:214420/251‑1 (MQ=255) gCGTTGATTTGTTCCTGATCGAGCAGGAGGTGCTTGAACCGCGGACTCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCGGCGCAGATGCAACATGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGGTGGATGATAATCCGTGCCATTAGGCTGTACGCTCACCAGGCGGGGCACGCGCTTGTTGATGCg < 1:221030/251‑1 (MQ=255) cAGGAGTTGCTTGAACCGCTGACGCCGTTCGGAGAGCTCACACCAATCGAGGTTTTCTCTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAGTCCGAGGATGCGCAGATGCAACATGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCCTTAGGCAGTAAGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCCGTCATCAACGGTCggg > 1:280057/1‑250 (MQ=255) aGTTGCTTGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTccggcancccnnnnncc < 2:193939‑M2/144‑18 (MQ=255) cTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAAAGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCg > 1:43835/1‑116 (MQ=255) aGTGCTCCTACCAGTCGAGGTTTTCTTTCAGCGTGCGGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCGGCGCAGATGCAACATGATTTCCGGTACCCCACCTGCCATAAAGGCATTGACCGTTTGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGGCGGGATATGGCACCCTGCCTGGTGAGCAATTGCCggg < 1:162927/251‑1 (MQ=255) ggTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCACCAATCCGAGGCTGCGCAGATGCCACCTGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGTTGGATGCTCAACCGGGCCATTAgg > 1:190801/1‑139 (MQ=255) ctttcAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGCTGCCACATGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGATGGATGATAAACAGGGCAATTAGGCAGTACGCACACCCGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGATATGGCAACCTGCCTGGTGAACAATTGCCGGGGTGTGTAACAGCAGGTTTGTTGa > 1:286692/1‑250 (MQ=255) tcAGCGTGCTGCCGGTACCCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGATATGGCAACCTGCCTGGTGAGCAATTGCCGGGATGTGTAACAGCAGGTTTGTTGAacn < 1:193939/250‑2 (MQ=255) ctgcCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTccggcagcacgctgaaagaaaacatcgactggtgggagcactccgaacggcgtcagcggttcaagcacctcctgctcgatcaggaaaaaatcaacgctgac < 1:238893‑M2/165‑102 (MQ=255) ctgcCGGTAACCGGCATAANGNCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTccggcancacgctgaaanaaannctcgncngntgggagcactccgaacggcgtcagcggttnaagcaactcctgctcgatcaggannaannnaannctgac > 2:238893‑M2/1‑64 (MQ=255) ggTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCAACAGTCGGGGCCCGCGCt > 1:47947/1‑146 (MQ=255) caacaaCCCGAGGCTGCGCATATGCAACATGACTTCCGGCACACCACCTGCCATAAAg < 1:287993/58‑1 (MQ=255) naaTCCGAGGCTGCGCAGATGTAACATGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGTTgg > 1:201537/2‑69 (MQ=255) caaTCCGAGGCTGCGCAGATGTAACATGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGTTgg < 2:201537/69‑1 (MQ=255) cgcAGATGCAACATGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAg < 1:7605/80‑1 (MQ=255) cgcAGATGCAACATGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAg > 2:7605/1‑80 (MQ=255) gCAACATGACTTCCGGCACCCCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGTGCCATTAGGCAGTACTCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGa < 1:117567/111‑1 (MQ=255) aaCATGACTTCCGGCACACCACCTGCCATAACGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGCTGATGCGGATCCAGTCATCAACGGTCGGGATATGGCAACCTGCCTGGTGAGCAATTGCCGGGATGTGTAACAGCAGGTTTGTTGAACCACCGAACGCGGCATGGACCGTCATCGCATTCTCTATCGCTTTATCGGTGAGAATTTCCCGggt > 1:282387/1‑251 (MQ=255) | ATATTGCCCACCGGGAAGGTGATAGTTGAGGTTAATCCGCGCGCTTTTGCTTGCTGCGGAGACATGATCACTTCGTCAGCGTTGATTTGTTCCTGATCGAGCAGGAGTTGCTTGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGATATGGCAACCTGCCTGGTGAGCAATTGCCGGGATGTGTAACAGCAGGTTTGTTGAACCACCGAACGCGGCATGGACCGTCATCGCATTCTCTATCGCTTTATCGGTGAGAATTTCCCGGGT > NC_000913/4522764‑4523236 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |