New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4522938	15 (1.150)	3 (0.240)	3/278	1.1	17.0%	coding (1157/1968 nt)	yjhG	D‑xylonate dehydratase
	?	NC_000913	= 4522995	15 (1.200)					coding (1100/1968 nt)	yjhG	D‑xylonate dehydratase
Rejected: Frequency below/above cutoff threshold.

GCTCATCAATCATCGAGGGGTCAATGGCGGTGGATTTGATCACCGAACCTTCTGGCGCAATATTGCCCACCGGGAAGGTGATAGTTGAGGTTAATCCGCGCGCTTTTGCTTGCTGCGGAGACATGATCACTTCGTCAGCGTTGATTTGTTCCTGATCGAGCAGGAGTTGCTTGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGATATGGCAACCTGCCTGGTGAGCAATTGCCGGGATGTGTAACAGCAGGTTTGTTGAACC  >  NC_000913/4522705‑4523173                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                            gCTCATCAAGCATCGAGTGGTCAATGGCGGTGGATTTGATCACCGAACCTTCTGGCGCAATATTGCCCACCGGGAAGGTGATAGTTGAGGTTAATCCGCGCACTTTTGCGTGCTGCGGAGACATGATCACTTCGTCAGCGTTGATTTGTTCCTGATCGAGCAGGAGTTGCTTGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTc                                                                                                                                                                                                                             <  1:329263/250‑1 (MQ=255)                                                            atatTGCCCACCGGGAAGGTGATAGTTGAGGTTAATCCGCGCGCTTTTGATTGCTGCGGAGACATGATCACTTCGTAAGCGTTGATTTGTTCCTGATCGAGCAGGAGTTGCTTGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGCGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGAAACATGACTTACGGca                                                                                                                                                                              >  1:311981/1‑238 (MQ=255)                                                                                                ccGCGCGCTTTTGCTTGCTGCGGAGACATGATCACTTCGTCAGCGTTGATTTGTTCCTGATCGAGCAGGAGTTGCTTGAACAGCTGACGCCGTTCGGACTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGa                                                                                                                                                                                                 >  1:280961/1‑183 (MQ=255)                                                                                                   cgcgcTTTTGCTTGCTGCGGAGACATGATCACTTCGTCAGCGTTGATTTGTTCCTGATCGAGCAGGAGTTGCTTGACCCGCTGACGCCGCTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTgc                                                                                                                                                                                                      >  1:211747/1‑175 (MQ=255)                                                                                                                gctgcGGAGACATTATCACTTCGTCAGCGTTGATTTGTTCCTGATCGAGCAGGAGTTGCTTGAACCGCGGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCATCGGGCTGCCGTTAACCGTCATAACGTCTTCATGCAACAAGCCGAGGCTGCGCAGAGGCAACATGACTTCCGGCACACCACCTGCCATAAATGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCAcc                                                                                                             <  1:214420/251‑1 (MQ=255)                                                                                                                                      gTCAGNNTTNNNTTNNTCCTGATCGAGCAGGAGTTGCTTNAACCGCTGACGCCGTTCGGAGTGCTCCCANCNGNCGAGNNTTTNTTTCAGCGTGNTGCCGGaagtcatgttgcatctgcgcagcctcggattgttgcatgaagncnttatgccggttaccggcag                                                                                                                                                                             >  2:238893‑M1/1‑101 (MQ=255)                                                                                                                                      gTCAGCGTTGATTTTTTCCTGATCGAGCAGGAGGTGCTTGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGATGTTTTCTTTCAGCGTGCTGCCGGaagtcatgttgcatctgcgcagcctcggattgttgcatgaagacgttatgacggttaccggcag                                                                                                                                                                             <  1:238893‑M1/165‑65 (MQ=255)                                                                                                                                          gCGTTGATTTGTTCCTGATCGAGCAGGAGGTGCTTGAACCGCGGACTCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCGGCGCAGATGCAACATGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGGTGGATGATAATCCGTGCCATTAGGCTGTACGCTCACCAGGCGGGGCACGCGCTTGTTGATGCg                                                                                   <  1:221030/251‑1 (MQ=255)                                                                                                                                                                 cAGGAGTTGCTTGAACCGCTGACGCCGTTCGGAGAGCTCACACCAATCGAGGTTTTCTCTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAGTCCGAGGATGCGCAGATGCAACATGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCCTTAGGCAGTAAGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCCGTCATCAACGGTCggg                                                             >  1:280057/1‑250 (MQ=255)                                                                                                                                                                     aGTTGCTTGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTccggcancccnnnnncc                                                                                                                                                                   <  2:193939‑M2/144‑18 (MQ=255)                                                                                                                                                                                   cTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAAAGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCg                                                                                                                                                                                 >  1:43835/1‑116 (MQ=255)                                                                                                                                                                                                 aGTGCTCCTACCAGTCGAGGTTTTCTTTCAGCGTGCGGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCGGCGCAGATGCAACATGATTTCCGGTACCCCACCTGCCATAAAGGCATTGACCGTTTGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGGCGGGATATGGCACCCTGCCTGGTGAGCAATTGCCggg                            <  1:162927/251‑1 (MQ=255)                                                                                                                                                                                                     cccccACCAGCCGAGGTTTTCTTTCACCGTGCGTCCGGTAGCCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGAc                                                                                                                                                                                      <  1:234546/91‑1 (MQ=255)                                                                                                                                                                                                     cTCCCACCNGNNNANNTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAAAGTCTTCATGNACCAATCCGCGGCTGNGCNGATGNACCNTGAc                                                                                                                                                                                      >  2:234546/1‑93 (MQ=255)                                                                                                                                                                                                                   ggTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCACCAATCCGAGGCTGCGCAGATGCCACCTGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGTTGGATGCTCAACCGGGCCATTAgg                                                                                                                          >  1:190801/1‑139 (MQ=255)                                                                                                                                                                                                                         ctttcAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGCTGCCACATGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGATGGATGATAAACAGGGCAATTAGGCAGTACGCACACCCGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGATATGGCAACCTGCCTGGTGAACAATTGCCGGGGTGTGTAACAGCAGGTTTGTTGa     >  1:286692/1‑250 (MQ=255)                                                                                                                                                                                                                          ggnnnnngggntgccggaagtcatgttgcatctgcgcagcctcggattgttgcatgaagacgttatgacggttaccggcagcacgctgaaagaaaacctcgactggtgggagcactccgaacggcgtcagcggttcaagcaact                                                                                                              <  2:193939‑M1/135‑128 (MQ=255)                                                                                                                                                                                                                            tcAGCGTGCTGCCGGTACCCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGATATGGCAACCTGCCTGGTGAGCAATTGCCGGGATGTGTAACAGCAGGTTTGTTGAacn  <  1:193939/250‑2 (MQ=255)                                                                                                                                                                                                                                    ctgcCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTccggcagcacgctgaaagaaaacatcgactggtgggagcactccgaacggcgtcagcggttcaagcacctcctgctcgatcaggaaaaaatcaacgctgac                                                                               <  1:238893‑M2/165‑102 (MQ=255)                                                                                                                                                                                                                                    ctgcCGGTAACCGGCATAANGNCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTccggcancacgctgaaanaaannctcgncngntgggagcactccgaacggcgtcagcggttnaagcaactcctgctcgatcaggannaannnaannctgac                                                                               >  2:238893‑M2/1‑64 (MQ=255)                                                                                                                                                                                                                                         ggTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCAACAGTCGGGGCCCGCGCt                                                                                             >  1:47947/1‑146 (MQ=255)                                                                                                                                                                                                                                          |                                                                                                                                                                                                                                            GCTCATCAATCATCGAGGGGTCAATGGCGGTGGATTTGATCACCGAACCTTCTGGCGCAATATTGCCCACCGGGAAGGTGATAGTTGAGGTTAATCCGCGCGCTTTTGCTTGCTGCGGAGACATGATCACTTCGTCAGCGTTGATTTGTTCCTGATCGAGCAGGAGTTGCTTGAACCGCTGACGCCGTTCGGAGTGCTCCCACCAGTCGAGGTTTTCTTTCAGCGTGCTGCCGGTAACCGTCATAACGTCTTCATGCAACAATCCGAGGCTGCGCAGATGCAACATGACTTCCGGCACACCACCTGCCATAAAGGCATTGACCGTTGGATGATAAACCGGGCCATTAGGCAGTACGCTCACCAGTCGGGGCACGCGCTTGTTGATGCGGATCCAGTCATCAACGGTCGGGATATGGCAACCTGCCTGGTGAGCAATTGCCGGGATGTGTAACAGCAGGTTTGTTGAACC  >  NC_000913/4522705‑4523173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.