| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,481,760 | 0 | C | T | 60.0% | 0.9 / 11.0 | 15 | L158F (CTT→TTT) | yheS | putative ATP‑binding protein YheS |
| Reads supporting (aligned to +/- strand): ref base C (3/3); new base T (6/3); total (9/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.22e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.01e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCGCTGGAATATGTCATTGACGGCGACCGTGAATATCGTCAACTAGAAGCGCAGCTACACGACGCCAACGAACGTAACGACGGGCACGCCATTGCGACCATTCATGGCAAGCTGGATGCTATTGACGCATGGAGTATTCGCTCCCGTGCTGCCAGCCTGCTGCACGGCCTCGGTTTCAGCAATGAACAACTGGAGCGCCCGGTAAGTGATTTTTCCGGGGGCTGGCGTATGCGTCTTAACCTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCACGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTAC > NC_000913/3481526‑3481969 | gcgcTGGAATATGTCATTGACGGCGACCGTGAATATCGTCAACTAGAAGCGCAGCTACACGACGCCAACGAACGTAACGACGGGCCCGCCATTGCGACCATTCATGGCAAGCTGGATGCTATTGACGCATGGAGTATTCGCTCCCGTGCTGCCAGCCTGCTGCACGGCCTCGGTTTCAGCAATGAACAACTGGAGCGCCCGGTAAGTGATTTTTCCGGGGGCTGGCGTATGCGTTTTAACCTTGCCCAGgc > 1:244661/1‑251 (MQ=255) ccGTGAATATCGTCAACTAGAAGCGCAGCTACACGACGCCAACGAACGTAACGACGGGCACGCCATTGCGATCATTCATGGCAAGCTGGATGCTATTGACGCATGGAGTATTCGCTCCCGTGCTGCCAGCCTGCTGCACGGCCTCGGTTTCAGCAATGAACAACTGGAGCGCCCGGTAAGTGATTTTTCCGGGGGCTGGCGTATGCGTTTTAACCTTGCCCAGGCGCTGAGTTGCCGTTCAGACTtgctgc < 1:103229/251‑1 (MQ=255) cgaacgGAACGACGGGCACGCCATTGCGACCATTCATGGCAAGCTGGATGCTATTGACGCATGGAGGAGTCGCTCCCGTGCTGCCAGCCTGCTGCACGGCCTCGGTTTCAGCAAGGAACAACTGTATCGCCCGGTAAGTGGTTGTTCCGGGGGCTGGCGTATGCGTTTTAACCTTGCCCAgg < 1:286803/182‑1 (MQ=255) cAAGCTGGATGCTATTGACGCATGGAGTATTCGCTCCCGTGCTGCCAGCCTGCTGCACGGCCTCGGTTTCAGCAATGAACAACTGGAGCGCCCGGTAAGTGATTTTTCCGGGGGCTGGCGTATGCGTTTTAACCTTGCCCAGGCGCTGACTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCGTATCCCGT‑ATTCGGCTGGAAAAATgaatgaaatgctatacgggcccgt > 1:227183/1‑228 (MQ=255) cAAGCTGGATGCTATTGACGCATGGAGTATTCGCTCCCGTGCTGCCAGCCTGCTGCACGGCCTCGGTTTCAGCAATGAACAACTGGAGCGCCCGGTAAGTGATTTTTCCGGGGGCTGGCGTATGCGTTTTAACCATGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCCCCTCGATCTCG‑ATTCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCACGc > 1:227170/1‑251 (MQ=255) cTATTGACGCATGGAGTATTCGCTCCCGTGCTGCCAGCCTGCTGCACGGCCTCGGTTTCAGCAATGAACACCTCGAGCGCCCGGTAAGTGATTTTTCCGGGGGCTGGCGTATGCGTCTTAACCTTGCACAGGCGCTGATTTGCCg > 1:140445/1‑145 (MQ=255) tttGATGCATGGAGTATTCGCTCCCGTGCTGCCAGCCTGCTGCACGGCCTCGGTTTCAGCAATGAACAACTGGAGCGCCCGGTAAGTGATTTTTCCGGGGGCTGGCGTATGCGTCTTAACCGTGCCCAGGCGCTGAGTTGCCTTTCAGGCTTGCTGCTGCTCTACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCACGctgatcctgatc < 1:226338/248‑1 (MQ=255) aTTCGCTCCCGTGCTGCCAGCCTGCTGCACGGCCTCGGGTTCAGCAATAAACCACTGGAGAGCCCGGTCAGTGATTTTTCCGGGGGCTGGCGCATGCGTCTTAACCTTGccc > 1:142325/1‑112 (MQ=255) cAGCAATGAACAACTGGAGCGCCCGGTAAGTGATTTTTCCGGGGGCTGGCGTATGCGTTTTAACCTTGCCCAGGCGCTGATTTACCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑TTGCCGTTATTTTGCTGGAAAAATGGCTGAAGAGCTATCAGGGCACGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGaacaac > 1:108747/1‑251 (MQ=255) gCAATGAACAACTGGAGCGCCCGGTAAGTGATTTTTCCGGGGGCTGGCGTATGCGTTTTAACCTTGCCCAGGCGCTGATTTGCAGTTCAGACTTGCTGCTGCTCGACGAACCGACTACCCACCTCGATCTCG‑TTGCCGGTCTTTGGCTGGAAAAATGACTGAaga > 1:314895/1‑165 (MQ=255) acTGGAGCGCCCGGTAAGTGATTGTTCCGGGGGCTGGCGTATGCGTTTTAACCTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCACGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTcn < 1:86229/251‑2 (MQ=255) cTGGAGCGCCCGGTAAGAGATTTTTCCGGGGGCTGGCGTATGCGTTTTAAACTTGCTCGGGCGCTGATTTGCCGTTCAGACTTTCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ACGCCATTATATGGCTGGAAAAATGGCGGAAGAGCCGTCAGGGCACGGCGACCCTGAGCTCTCACGACAGCGACTTCCTCGCTCCGATCGTCGCTAAAATTATTCATATCGAACAACAAAGCATGtt > 1:168802/1‑248 (MQ=255) gcCCGGTAAGTGATTTTTCCGGGGGCTGGCGTATGCGTCTTAACCTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCGGAAGAGCTATCAGGGCACTCTGATCCTGAtctctcn < 1:96212/178‑2 (MQ=255) nccGGTAAGTGATTTTTCCGGGGGCTGGCGTATGCGTCTTAACCTTGCCCCGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCGCATGCCGTCTTCTG‑CTTGAAAAATAGCTGACGAGCCATCTGGGCTCGCCGATCCTGATCTCTCCCGACCGCGACTTCCTCGAACAGATCATCGGTAAAATTATTCATCTCGAACAACAAAGCATGTTCGAggac > 1:83579/2‑244 (MQ=255) cGNTAAGTNATTTNTCCGGGGGCTGGCGTNTGCGTCTTAACCTTGCCCANNCNCAGATNTGCCg < 2:140445/64‑1 (MQ=255) | GCGCTGGAATATGTCATTGACGGCGACCGTGAATATCGTCAACTAGAAGCGCAGCTACACGACGCCAACGAACGTAACGACGGGCACGCCATTGCGACCATTCATGGCAAGCTGGATGCTATTGACGCATGGAGTATTCGCTCCCGTGCTGCCAGCCTGCTGCACGGCCTCGGTTTCAGCAATGAACAACTGGAGCGCCCGGTAAGTGATTTTTCCGGGGGCTGGCGTATGCGTCTTAACCTTGCCCAGGCGCTGATTTGCCGTTCAGACTTGCTGCTGCTCGACGAACCGACTAACCACCTCGATCTCG‑ATGCCGTTATCTGGCTGGAAAAATGGCTGAAGAGCTATCAGGGCACGCTGATCCTGATCTCTCACGACCGCGACTTCCTCGATCCGATCGTCGATAAAATTATTCATATCGAACAACAAAGCATGTTCGAGTAC > NC_000913/3481526‑3481969 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |