| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,490,340 | 0 | C | T | 64.7% | 7.8 / 10.0 | 17 | G164S (GGT→AGT) | pabA | aminodeoxychorismate synthase subunit 2 |
| Reads supporting (aligned to +/- strand): ref base C (4/2); new base T (5/6); total (9/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.20e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACTTCATCGAAAGTCGCGCGTGTAATTGCTGTTTGTTCAATTGCCATCTCATGATCACCCTGTTACGCATAAACAAATGTGAAATTATAACCACAAAATATGCATAAAAAATCACTAAATGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCACGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTAATCGGCGAGGTTTTGCCGTGCATGACCTTTGCGGCGCGCACA > NC_000913/3490134‑3490551 | aCTTCATCGAAAGTCGCGCGTGTAATTGCTGTTTGTTCAATTGCCATCTCATGATCACCCTGTTACGCATAAACAAATGTGAAATTATAACCACAAAATATGCATAAAAAATCACTAAATGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACTTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCggg < 1:267870/251‑1 (MQ=255) cTTCATCGAAAGTCGCGCGTGTAATTGCTGTTTGTTCAATTGCCATCTCATGATCACCCTGTTACGCATAAACAAATGTGAAATTATAACCACAAAATATGCATAAAAAATCACTAAATGGCAATCAGAAATCAGCGATGCAGGAAATAAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACTTTCCAGATCCCACTGGCGATGGCGAAt > 1:171591/1‑233 (MQ=255) gCCATCTCATGATCACCCTTTTACGCATAAACAAATGTGAAATTATAACCACAAAAAATGCATAAAAAATCACTAAAGGGCAATCAGAAGGCAGCGATGCAGGAAATTACCCAGCAGTGGAGTTCCTTGTTCGCTAAGAATCCTTTCTGGATGCAACGGCACACTGTCCAGCTCCCACTGGCGAGGGCGAATCCCCATAATCTCCCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCACGCTGGTAATGAg < 1:186082/250‑1 (MQ=255) cATGATCACCCTGTTACGCATAAACAAATGTGAAATTATAACCACAAAATATGCATAACAAATCACTAAATGGCAATCAGAAATAAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGATAAGAATAATTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAACGCACGCTGGGAATGAGTCAGGTTc > 1:234508/1‑251 (MQ=255) gCATACACACATGTGAAATTATAACCACAAAATATGCATAAAAAATCACTAAATGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCACGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGt > 1:269787/1‑251 (MQ=255) tataACCACAAAATATGCATAAAAAATCACTAAATGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTcc < 1:74968/126‑1 (MQ=255) tataACCACAAAATATGCATAAAAAANCACTAANNGGNAATCAGAAATCAGCGATGCNGGNNNTNNNCNCGCAGNTGNNGTCCTTGTTNGCTAAGAATACTTTCTGGATGGAACTGCACACCTTcc > 2:74968/1‑126 (MQ=255) cAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACTTTCCAGATCCCACTGGCGATGGCGAATCCCCATTATCTCGCGGGTGTCGCTCCAGGCCGTCACGTCAAAGCACGCTGGGAAGGAGTCAGTTTCCACCACCAGCGAATGGTAGCTTGTCACGGTAAGTTGAGTTGCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTa < 1:287425/250‑1 (MQ=255) gATGCAGGAAATTAGCCAGCAGTGGAGGGCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACtggcgatggcga < 1:49360/95‑1 (MQ=255) cAGGAAATTAGCCAGCAGTTGATGTACTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAAtc > 1:250547/1‑103 (MQ=255) aTTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATTCTTTCTGGATGGAACTGCACACTTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCACGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGTTAGCGTGTCACGGTAAGTGGATTTTCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTAAGCGTCGATGTTTTGCCGTGcn < 1:96232/251‑2 (MQ=255) ttAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACTTTCCAGATCCCACTGGCGATAGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCACGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATAc > 1:132534/1‑209 (MQ=255) nttGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACTTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCACGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTAATCGGc > 1:193121/2‑224 (MQ=255) gTTGATGTCCTTGTTCGCTAAGAATACTTTATGGATGGAACTGCACACTTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCTGGCCGTCACGTCAAAGCACGCTGGTAATGAGTCAGGTTccacca > 1:272191/1‑147 (MQ=255) ttCTGGATGGAACTGCACACTTTCCAGATCCCACtggcgatggcg < 1:128367/45‑1 (MQ=255) ggatggaACTGCACACTTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGGCAAAGCACGCTTGTAATGAGTCAGGTTCCACCCCCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGc < 1:161537/156‑1 (MQ=255) gCACACTTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCACGCTGGTAATGAGTCAGGTTCCACCACCAGCGCATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTAATCGGCGAGGTTTTGCCGTGCATGACCTTTGCGGCGCGcaca > 1:187828/1‑218 (MQ=255) | ACTTCATCGAAAGTCGCGCGTGTAATTGCTGTTTGTTCAATTGCCATCTCATGATCACCCTGTTACGCATAAACAAATGTGAAATTATAACCACAAAATATGCATAAAAAATCACTAAATGGCAATCAGAAATCAGCGATGCAGGAAATTAGCCAGCAGTTGATGTCCTTGTTCGCTAAGAATACTTTCTGGATGGAACTGCACACCTTCCAGATCCCACTGGCGATGGCGAATCCCCATAATCTCTCGGGTTTCGCTCCAGGCCGTCACGTCAAAGCACGCTGGTAATGAGTCAGGTTCCACCACCAGCGAATGGTAGCGTGTCACGGTAAGTGGATTTGCCAGCCCCCGAAATACGCCCTCACCGTTATGTGTAATCGGCGAGGTTTTGCCGTGCATGACCTTTGCGGCGCGCACA > NC_000913/3490134‑3490551 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |