| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,323,136 | 0 | C | T | 60.0% | ‑3.6 / 11.4 | 18 | intergenic (‑714/+200) | phnF/phnD | putative transcriptional regulator PhnF/phosphonate/phosphate ABC transporter periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base C (3/3); new base T (5/4); total (10/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.37e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CATCAGGCGGCGAACGGGCTGGTAAACCCACCACGGCACCAGGTTTTCGGCGCTCATCAGGCCAAAGGGGATGGAGAGAACCACCGCCAGCGCGGTGCCCCAGACGGCGATTTGCAGCGTGACGGCCATTTCGGTGAGGTAATCCTGCCACTGGCTGAAATCGGGCGGGAAGAAGTCGGCGGCGAACGTCGCCATGTTGCCGCCGTCTTTGATCAGCGTAAGCGGGGCCATTTCCGCGCCCTGCCACGAGACGACCAACACGGCGAGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGT > NC_000913/4322898‑4323382 | cATCAGGCGGCGAACGGGCTGGTAAACCCACCACGGCACCAGGTTTTCGGCGCTCATCAGGCCAAAGGGGATGGAGAGAACCACCGCCAGCGCGGTGCCCCAGACGGCGATTTGCAGCGTGACGGCCATTTCGGTGAGGTAATCCTGCCACTGGCTGAAATCGGGCGGGAAGAAGTCGGCGGCGAACGTCGCCATGTTGCCGCCGTCTTTGATCAGCGTAAGCGGGGCCATTTCCGCGTCCTGCCACg > 1:56022/1‑248 (MQ=255) ggCTGGTAAACCCACCACGGCACCAGGTTTTCGGCGCTCATCAGGCCAAAGGGGATGGAGAGAACCACCGCCAGCGCGGTGCCCCAGACGGCGATTTGCAGCGTGACGGCCATTTCGGTGAGGTAATCCTGCCACTGGCTGAAATCGGGCGGGAAGAAGTCGGCGGCGAAAGTCGCCATGTTGCCGCCGTCTTTGATCAGCGTAAGCGGGGCCATTTCCGCGTCCTGCCACGAGACGACCAACACGGCg > 1:154205/1‑249 (MQ=255) ccAAAGGGGGGGGGGAGACCCACCGCCAGCGCGCGGCCCCAGACGGCGATTGGCAGCGTGACGTCCAGTCCGGTGAGGTAATCCTGCCACTGGCTGAAATCGGGCGGGAAGAAGTCTGCGGCGAACGTCCCCATGTGGCCGCCGGCTTTGATCAGCGTAAGCGGGGCCATTCCCGCGGCCGGCCTCGAGACGACCAACACGGCGAGTACAACAGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTtgggtgg < 1:235262/251‑1 (MQ=255) ccGCCAGCGCGGTGCCCCAGACTGCGATTTGCAGCGTGCCGGCCATTTCGGTGAGGTAATCCTGCCACTGGCTGAAATCGGGCGGGAAGAAGTCGGCGGCGAACGTCGCCATGTTGCCGCCGTCTTTGATCAGCGTAAGCGGGGCCATTTCCGCGCCCTTCCACGAGACGGCCAACACTGCGAGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTtgggtggg < 1:229280/230‑1 (MQ=255) cgGTGCCCCAGACGGCGATTTGCAGCGTGACGGCCATTTCGGTGAGGTACTCCTGCCACTGACTGCAATCGGGCGGGCAGCAGTAGGCGGCGACCGTAGCCCTGTTGCCTCCGTCTTTGATCAGCGTAAGCGGGGCCATTTCCGCGCCCTGCCACGAGAAGACCAACACGGCg > 1:213130/1‑173 (MQ=255) cgGTGCCCCAGACGGCGATTTGCAGCGTGACGGCCATTTCGGTGAGGTAATCCTGCCACTGGCTGAAATCGGGCGGGAAGAAGTCGGCGGCGAACGTCGCCATGTTGCCGCCGTCTTTGATCAGCGTAAGCGGGGCCATTTCCGCGTCCTGCCACGAGACGACCAACACGGCGAGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGCTGGTGATGGTTTGCATGTTTGGCTcc > 1:21951/1‑251 (MQ=255) gCCCCAGACGGCGATTTGCAGCGTGACGGCCATTTCGGTGAGGTAATCCTGCCACTGGCGGAAATCGGGCGGGAAGAAGTCGGCGGCGAACGTCGCCATGTTGCCGCCGTCTTTGAGCAGCGTAAGCTGGGCCATTTCCGCGTCCTGCCACGAGACGACCAACACGGCGAGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTc < 1:56580/251‑1 (MQ=255) gCAGCGTGACGGCCATTTCGGTGAGGTAATCCTGCCACTGGCTGAAATCGGGCGGGAAGAAGTCGGCGGCGAACGTCGCCATGTTGCCGCCGTCTTTGATCAGCGTAAGCGGGGCCATTTCCGCGTCCTGCCANGAGNNNNNCannnnnnnnnn > 2:197234/1‑144 (MQ=255) gTGAGGTAATCCTGCCACTGGCTGAAATCGGGCGGGAAGAAGTCGGCGGCGAACGTCGCCATGTTGCCGCCGGCTTTGATCAGCGTAAGCGGGGCCATTTCCGCGTCCTGCCACGAGACGACCAACACGGCGAGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGAGGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTg < 1:212362/232‑1 (MQ=255) ggCTGAAATCGGGCGGGAAGAAGTCGGCGGCGAACGTCGCCATGTTGCCGCCGTCTTTGATCAGCGTAAGCGGGGCCATTTCCGCGCCCTGCCACGAGACGACCAACACGGCGAGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGTgatggtgang < 1:255474/173‑1 (MQ=255) gggAAGAAGTCGGCGGCGAACGTCGCCATGTTGCCGCCGTCTTTGATCAGCGTAAGCGGGGCCATTTCCGCGTCCTGCCACGAGACGACCAACACGGCGAGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCggn < 1:197234/251‑2 (MQ=255) ggacgaagTCGGCGGCGAACCTCGCCCTGATGCCGCCGTCTTTGATCAGCGTAAGCGGGTCCATTTCCGCGACCTGCCCCGAGACGACCAACGCGGCGAGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCgatg > 1:272450/5‑152 (MQ=255) gTCGCCATGTTGCCGCCGTCTTTGATCAGCGTAAGCGGGGCCATTTCCGCGCCCTg > 2:18881/1‑56 (MQ=255) gTCGCCATGTTGCCGCCGTCTTTGATCAGCGTAAGCGGGGCCATTTCCGCGCCCTg < 1:18881/56‑1 (MQ=255) ngCCATGTTGCCGCCGTCTTTGATCAGCGTAAGCGGGGCCATTTCCGCGACCTGCCACGAGACGACCAACACGGCGAGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGAttt > 1:36558/2‑251 (MQ=255) tNANCGGGGCCATTTCCGCGTCCTGCCACGAGACGACCAACANGGCGNGNNCANCNGCNCAGCt < 2:154205/64‑1 (MQ=255) ccGCGCCCTGCCACGAGACGACCAACACGGCGAGTACAACGGCCCAGCTCAGAAGAGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTACGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCGTCAAc > 1:47818/1‑155 (MQ=255) cgcgTCCTGCCACGAGACGACCAACACGGCGAGTACACCGGCCCAGCTCAGAAGCGAGAACCAGCTGAGATTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCTTCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCgttgt > 1:317656/1‑251 (MQ=255) | CATCAGGCGGCGAACGGGCTGGTAAACCCACCACGGCACCAGGTTTTCGGCGCTCATCAGGCCAAAGGGGATGGAGAGAACCACCGCCAGCGCGGTGCCCCAGACGGCGATTTGCAGCGTGACGGCCATTTCGGTGAGGTAATCCTGCCACTGGCTGAAATCGGGCGGGAAGAAGTCGGCGGCGAACGTCGCCATGTTGCCGCCGTCTTTGATCAGCGTAAGCGGGGCCATTTCCGCGCCCTGCCACGAGACGACCAACACGGCGAGTACAACGGCCCAGCTCAGAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGTTGT > NC_000913/4322898‑4323382 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |