mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 21 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 48.4% | 17.6 / 21.7 | 32 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 2,326,450 | 0 | T | G | 42.3% | 77.2 / 19.3 | 52 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 1,261,842 | 0 | T | G | 40.9% | 102.6 / 16.5 | 66 | T12P (ACC→CCC) | prs | ribose‑phosphate diphosphokinase |
| * | NC_000913 | 599,576 | 0 | T | G | 40.0% | 99.4 / 12.5 | 60 | V288G (GTG→GGG) | cusA | copper/silver export system RND permease |
| * | NC_000913 | 2,008,373 | 0 | G | T | 37.5% | 55.3 / 11.5 | 40 | G33C (GGC→TGC) | yedE | putative selenium transporter YedE |
| * | NC_000913 | 1,825,056 | 0 | G | A | 35.5% | 45.0 / 11.8 | 31 | intergenic (‑119/+84) | ves/spy | HutD family protein Ves/ATP‑independent periplasmic chaperone |
| * | NC_000913 | 4,604,350 | 0 | C | T | 35.5% | 38.3 / 11.2 | 32 | S64F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 689,514 | 0 | A | C | 34.4% | 114.3 / 11.3 | 62 | G456G (GGT→GGG) | lnt | apolipoprotein N‑acyltransferase |
| * | NC_000913 | 1,550,663 | 0 | A | C | 33.3% | 153.4 / 13.4 | 75 | N68T (AAC→ACC) | fdnH | formate dehydrogenase N subunit beta |
| * | NC_000913 | 1,435,721 | 0 | T | A | 32.3% | 60.6 / 10.3 | 31 | intergenic (‑102/+39) | uspF/ompN | universal stress protein F/outer membrane porin N |
| * | NC_000913 | 811,721 | 0 | T | G | 31.2% | 137.0 / 10.6 | 78 | V67G (GTG→GGG) | bioC | malonyl‑acyl carrier protein methyltransferase |
| * | NC_000913 | 981,266 | 0 | G | A | 30.9% | 66.1 / 12.0 | 42 | A74T (GCC→ACC) | ldtD | L,D‑transpeptidase LdtD |
| * | NC_000913 | 2,185,199 | 0 | T | G | 29.6% | 134.8 / 21.8 | 73 | T35P (ACC→CCC) | thiM | hydroxyethylthiazole kinase |
| * | NC_000913 | 3,401,452 | 0 | G | A | 28.3% | 91.0 / 13.4 | 53 | F627F (TTC→TTT) | csrD | regulator of CsrB and CsrC decay |
| * | NC_000913 | 3,782,919 | 0 | T | A | 28.0% | 69.1 / 10.1 | 53 | D248V (GAT→GTT) | gpsA | glycerol‑3‑phosphate dehydrogenase |
| * | NC_000913 | 803,869 | 0 | G | T | 27.9% | 80.8 / 10.8 | 43 | V123L (GTG→TTG) | ybhJ | putative hydratase YbhJ |
| * | NC_000913 | 343,444 | 0 | A | G | 26.5% | 152.5 / 10.2 | 68 | G187G (GGA→GGG) | yahK | aldehyde reductase, NADPH‑dependent |
| * | NC_000913 | 2,707,441 | 0 | C | A | 26.3% | 110.2 / 10.4 | 58 | A121S (GCG→TCG) | rseC | protein RseC |
| * | NC_000913 | 3,585,058 | 0 | T | C | 25.5% | 111.5 / 11.6 | 47 | intergenic (+15/+23) | yrhB/ggt | putative heat shock chaperone/glutathione hydrolase proenzyme |
| * | NC_000913 | 904,961 | 0 | T | G | 25.3% | 186.2 / 14.7 | 75 | C17G (TGT→GGT) | amiD | N‑acetylmuramoyl‑L‑alanine amidase D |