| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 904,961 | 0 | T | G | 25.3% | 186.2 / 14.7 | 75 | C17G (TGT→GGT) | amiD | N‑acetylmuramoyl‑L‑alanine amidase D |
| Reads supporting (aligned to +/- strand): ref base T (12/44); new base G (19/0); total (31/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.92e-10 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCGATATCGTTGGCGGACGTTCCGGTGCGTATGAAAAAGAACTGCGTAAAGCACGGGAGATCGCCTTTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTATCTGGTCCCTGCGGTACCACCGCGATACAACGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAAGAACTGGCCTGG > NC_000913/904711‑905206 | gcgATATCGTTGGCGGACGTTCCGGTGCGTATGAAAAAGAACTGCGTAAAGCACGGGAGATCGCCTTTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATTAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGgt < 1:341947/251‑1 (MQ=255) atCGTTGGCGGACGTTCCGGTGCGTATGAAAAAGAACTGCGTAAAGCACGGGAGATCGCCTTTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGGTGAGAAGATTCTTTTGGGTGGTCGCTGCCGCCCTGTTATT‑TGCAGGGGGTGcc > 1:553518/1‑250 (MQ=255) ggCGGACGTTCCGGTGCGTATGAAAAAGAACTGCGTAAAGCACGGGAGGTCGCCTTTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGGAGGATGATGATGGTTAGCGTCTGCGGTACGGCGGTGAAAA‑CGCGGCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑aa < 1:75316/251‑1 (MQ=255) gTTCCGGTGCGTATGAAAAAGAACTGCGTAAAGCACGGGAGATCGCCTTTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCa < 2:482190/251‑1 (MQ=255) tCCGGTGCGTATGAAAAAGAACTGCGTAAAGCACGGGAGATCGCCTTTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGGAGGGGGTGCAGGCG‑AAAAAGGGA‑tt > 1:145287/1‑251 (MQ=255) ccGGTGCGTATGAAAAAGAACTGCGTAAAGCACGGGAGATCGCCTTTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGGCGGTGAGAAGATTTTTCTGGCTGGTCGCTGCCGCTCTGTTATTTGGC‑GGGGGTGCAGGCG‑AAAAAGGCA‑ttt > 1:137794/1‑250 (MQ=255) tGAAAAAGAACTGCGTAAAGCACGGGAGATCGCCTTTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGGGAAAA‑CACGTCGATGAGAAGGTTCTTTTTGCTGGGCGCTGGCCCTCGGTTTTT‑GGGAGGGGGTGGAGACG‑ATAAAGGGA‑tttttgagcaaa > 2:353912/1‑240 (MQ=255) aaaaGAACTGCGTAAAGCACGGGAGATCGCCTTTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTTGCTGGTTGCTGCCGCCCTGTTATT‑TGCCGGGGGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAggg > 1:280803/1‑251 (MQ=255) aGAACTGCGTAAAGCACGGGAGATCGCCTTTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGGCGATGAGAAGAATCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGGGGGGAGGCG‑AAAAAGGGA‑TTGTCGGGAAAGAGGGat > 1:164784/1‑250 (MQ=255) gCGTAAAGCACGGGAGATCGCCTTTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGc < 1:462124/250‑1 (MQ=255) aaGCACGGGAGATCGCCTTTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGAATCTTCTTGGTGGTCGCGGCCGCCCTGTTATT‑GGGAGGGGGTGGAGGCG‑AAAAAGGCAATTGT‑GAGAAAAAGGGATATCAGCtttat > 1:179841/1‑247 (MQ=255) gCACGGGAGATCGCCTTTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAAACACG‑CGATTCGAAGCTTCTTTTGGCAGGTTGCCGCCGCTCTTTTATT‑GGAAGGGGGTGCAGGGG‑AAAAAAGGA‑TTGAGCAGAAAGAGGGaaaacaaattgataac > 1:465769/1‑236 (MQ=255) gggAGATCGCCTGTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGGCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTTGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GAc < 2:279688/251‑1 (MQ=255) agaTCGCCTTTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGcc < 1:340682/251‑1 (MQ=255) gaTCGCCTTTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCCGCGGTGAGAAGATTCTTCTGGCTGGGCGGTGCCGCTCTGTTTTT‑GGCAGGGGGTGGAGGGG‑GAAAAGGCA‑ATGTTGGGGAAGAggggtgacagcttggaaacccaccccc > 2:469101/1‑227 (MQ=255) aTCGCCTTTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGGCGGTGAGAAGATTCTTCTGGCTGGGCGCTGCCGCCCTGTTATT‑GGCCGTGGGTGCAGGCG‑AAAAAAGGA‑TTTTCGAGAAAAAGGGATATCAGCTTGATAcccccccccc > 2:211473/1‑243 (MQ=255) gCCTTTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGGAAA‑CCCGGCGATGAGAAGATTCTTCTGGCTGGTTGCTGCCGCGCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGGAGGAGATCAGCATGGTAccctccggcaagcg > 1:546425/1‑240 (MQ=255) gCCTTTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGGGGAAA‑CGCGTCGGTGAGAAGATTCTTCTGGCTGGGCGCTGCCGCCCTTTTATT‑TGCCGGGGGTGGGGGCG‑GAAAAGGCA‑TTGTTGCGAAAGAGGGAGAACAACGTGATACCC‑GACGCcaggcg > 2:335040/1‑251 (MQ=255) cTTTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑AGCGGCGGTGAGGAGATTCTTTTTGCTGGTCGCTGCCGCCCTGTTATT‑TGCCGGGGGGGTAGGGG‑GAAAAGGCA‑TTTTCGTGAAAAAAGGATATCCGCTTGATACCC‑gcagcccagcggc > 2:492527/1‑239 (MQ=255) gAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCcaggcgcaggcg < 1:173341/251‑1 (MQ=255) aGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGGTGAGAAGATTCTTTTGGGTGGTTGCCGGCGCCCTGTTTTT‑GGCGGGGGGGGGCGGGG‑AAAAAGGCA‑TTTTTGGGAAAAAGGGGTATAAGCCTGATAACC‑TACGCcaggggacggggg > 1:362588/1‑242 (MQ=255) aGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATcc < 2:347805/251‑1 (MQ=255) aGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATcc < 1:267726/251‑1 (MQ=255) cgcgGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAg < 1:422462/251‑1 (MQ=255) gggCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGACGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGGGTCGATGAGAAGATTTTTCTGGCTGGTCGCTGCCCCCCTGTTTTT‑GGCAGGGGGTGCAGGCG‑AAAAAGGCA‑GTGTCGGGGAAGAGGGATATCAGCTTGAAACCCCAACGCCAG‑CCCAGGCGGGGGATACGCG‑CATTTAAgagc > 1:434820/1‑248 (MQ=255) gggCGCTGGGGGCCGATGCCGTCGGCGGTATTTATATCCACTACGAAACGGGCGGGCAAAACGGCAGTATTCTGATGGTTAGCGTCAGCCGTACGGCGGTGAAAA‑CGCGTCGATGAGAGGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGc < 2:354211/251‑1 (MQ=255) gggggCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTg < 1:166639/249‑1 (MQ=255) gCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCAc < 2:220629/251‑1 (MQ=255) gATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑ACCGTCGATGAAAAGATTCTTCTGGCTGGGCGCTGCCGCTCTGTTTTT‑GGGAGGGGGTGCAGGGGGAAAAAGG‑A‑TTGTCGGGGAAAAGGGGTATCAGATTGATACCC‑CACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAATGGTGGGGATCCACTac > 1:525314/1‑251 (MQ=255) cgacgGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAg < 2:362588/247‑1 (MQ=255) gtcgGTATTGATATCGACTACGAAACGGTCGAGCAAAACGGAAGTATGCTGATGGTTGGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCGGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATGAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATACACTACGCCGCAgtt < 2:211117/251‑3 (MQ=255) tcgGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAga < 1:362921/249‑1 (MQ=255) cgGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGAACGGCGGAGAAAA‑CGCCTCGATGGGAAGATTCTTCTGGATGGTCGCTGGCGCCCTGTTATT‑GGCAGGGTGTGAGGGCG‑AAAAAAGCA‑AAGTCGGGAAAGGGGGGGATCAGCTTTTTTCCA‑GACGCCAGGCGCAGGCGGGGTAGCCGCGACATTAAAG‑GCTgggtgtacactacacccgagatgg > 1:389543/1‑229 (MQ=255) gATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGAt < 1:27640/251‑1 (MQ=255) gATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGAt < 2:300249/251‑1 (MQ=255) cGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCt < 1:457922/250‑1 (MQ=255) aCGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCt < 1:198425/249‑1 (MQ=255) cGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGc < 1:514319/251‑1 (MQ=255) aaCGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGac < 2:145287/251‑1 (MQ=255) cGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGACAA‑AGCGTCGATGAGAAGATTCTTCTTGCTGGGCGCTGCCGCCCAGTTTTT‑GGGAGGGGGGGCCGGCG‑GAAAAGGGA‑TTGTCGAGAAAGAGGGGTATCAGCTTGGTAACC‑CACGCCAGGGGCCGGGGGCGGATCCCCG‑GTTTAAAGAGGTGGGGATTCCCTACACCGCCGATGATTTTTATAGATCACTGGGGGCACTGa > 2:207966/1‑250 (MQ=255) gggCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGAcc < 2:553518/251‑1 (MQ=255) gCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCCCTGTTATT‑GGCAGGGTGTGGAGGCG‑AAAAAAGCA‑TTGTCGGGAAAGAGGGATATCAGCTTGATAACC‑GCCGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAAGGCTGGGGATCCACTACACCGCAGATGATTTTGATAACACGCTTGCGACACTGACCg > 1:18812/1‑250 (MQ=255) aCGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTTGCTGCCGCTCTGTTATT‑GGCAGGGGGTGCAGGCG‑AAAAAAGCC‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGGATCCCCG‑CATTAAAATGCTTGGGATCCACCACACCGCAGATGATTTTTATAGCTCGCTGGCGACACTGACCGGTaaac > 1:272940/1‑249 (MQ=255) cAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGt < 1:527262/251‑1 (MQ=255) gTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCa < 2:179841/251‑1 (MQ=255) gATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGTATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGc < 1:228897/250‑1 (MQ=255) gTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTAt < 1:349747/251‑1 (MQ=255) aGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑g < 1:288366/133‑1 (MQ=255) aGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑g > 1:371963/1‑133 (MQ=255) aGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑g < 2:371963/133‑1 (MQ=255) aGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTATCTg < 1:323076/251‑1 (MQ=255) gCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCcag < 2:49960/133‑1 (MQ=255) gCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGGGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAAAGGGGTATCAGCTTGATACCC‑GACGcccg > 1:49960/1‑131 (MQ=255) gTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTATCTGGTCCCTGCgg < 1:420211/251‑1 (MQ=255) cggcggTGAAAA‑CGCGTCGAGGAGAAGATGCTTCGGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGGAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GTCGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACGACACCGCAGATGATTGTGATAGCTCGCTGGCGTCACTGACCGAGAAGTAGGTCAGCTAGCATTATCTGTGCCCTGCGGTac < 2:465769/251‑1 (MQ=255) gcggTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCg < 2:101656/174‑1 (MQ=255) gcggTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGGGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGGGCTGGTGATCCACTACACCg > 1:101656/1‑174 (MQ=255) ggTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTATCTGGTCCCTGCGGTaccacc < 1:469101/251‑1 (MQ=255) gTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTATCTGGTCCCTGCGGTACCACcg > 1:173278/1‑251 (MQ=255) gAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTATCTGGTCCCTGCGGTACCACcgcg > 2:86372/1‑251 (MQ=255) cgTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTATCTGGTCCCTGCGGTACCACCGCGATACAAc < 1:41248/251‑1 (MQ=255) aTGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCATTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCATGTCAGCTCGCATTATCTGGTCCCTGCGGTACCACCGCGATACAACGGTa < 2:323793/250‑1 (MQ=255) agaagaTTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTATCTGGTCCCTGCGGTACCACCGCGATACAACGGTAAAcc < 1:455847/251‑1 (MQ=255) agaagaTTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTATCTGGTCCCTGCGGTACCACCGCGATACAACGGTAAAcc > 1:446926/1‑251 (MQ=255) ttcttcTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTATCTGGTCCCTGCGGTACCACCGCGATACAACGGTAAACCGCGCAt > 1:482380/1‑251 (MQ=255) tctGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTATCTGGTCCCTGCGGTACCACCGCGATACAACGGTAAACCGCGCATCt < 1:247255/249‑1 (MQ=255) ggTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGAt < 2:25373/175‑1 (MQ=255) ggTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGAt > 1:25373/1‑175 (MQ=255) ggTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTATCTGGTCCCTGCGGTACCACCGCGATACAACGGTAAACCGCGCATCTGGCAACt < 1:86372/249‑1 (MQ=255) gCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTATCTGGTCCCTGCGGTACCACCGCGATACAACGGTAAACCGCGCATCTGGCAACTGGTGCCGGAAc > 1:512606/1‑250 (MQ=255) tGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTATCTGGTCCCTGCGGTACCACCGCGATACAACGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAAGa > 2:132794/1‑250 (MQ=255) gTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATGAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTATCTGGTCCCTGCGGTACCACCGCGATACAACGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAAGAAc > 2:208453/1‑251 (MQ=255) tATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTATCTGGTCCCTGCGGTACCACCGCGATACAACGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAAGAAct < 1:361083/250‑1 (MQ=255) aTT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTATCTGGTCCCTGCGGTACCACCGCGATACAACGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAAGAActg < 2:482380/250‑1 (MQ=255) ggCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTATCTGGTCCCTGCGGTACCACCGCGATACAACGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAAGAActggcc < 2:137794/250‑1 (MQ=255) cAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTATCTGGTCCCTGCGGTACCACCGCGATACAACGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAAGAActggcctgg < 2:280803/251‑1 (MQ=255) | GCGATATCGTTGGCGGACGTTCCGGTGCGTATGAAAAAGAACTGCGTAAAGCACGGGAGATCGCCTTTGAGGAATTAGGCTCCCAGGCGCGGGCGCTGGGGGCCGATGCCGTCGTCGGTATTGATATCGACTACGAAACGGTCGGGCAAAACGGCAGTATGCTGATGGTTAGCGTCAGCGGTACGGCGGTGAAAA‑CGCGTCGATGAGAAGATTCTTCTGGCTGGTCGCTGCCGCTCTGTTATT‑GGCAGGGTGTGCAGGCG‑AAAAAGGCA‑TTGTCGAGAAAGAGGGATATCAGCTTGATACCC‑GACGCCAGGCGCAGGCGGCGTATCCGCG‑CATTAAAGTGCTGGTGATCCACTACACCGCAGATGATTTTGATAGCTCGCTGGCGACACTGACCGATAAGCAGGTCAGCTCGCATTATCTGGTCCCTGCGGTACCACCGCGATACAACGGTAAACCGCGCATCTGGCAACTGGTGCCGGAACAAGAACTGGCCTGG > NC_000913/904711‑905206 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |