| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 689,514 | 0 | A | C | 34.4% | 114.3 / 11.3 | 62 | G456G (GGT→GGG) | lnt | apolipoprotein N‑acyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (34/6); new base C (0/21); total (34/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.43e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTCAGCACCCACAGCGGCCAGTT‑GCCGGTACGTGCGTATGGTGT‑GAGTC‑CGGTGGTCGGC‑GTCACG‑TTAGTGGTTAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCC > NC_000913/689272‑689754 | gATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTCAGCACCCACAGCGGCCAGTT‑GCCGGTACGTGCGTATGGTGT‑GAGTC‑CGGTGGTCGGC‑GTCACG‑TTAGTGGTTAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCgg > 1:462442/1‑251 (MQ=255) ccGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTCAGCACCCACAGCGGCCAGTT‑GCCGGTACGTGCGTATGGTGT‑GAGTC‑CGGTGGTCGGC‑GTCACG‑TTAGTGGTTAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGcc > 1:371654/1‑251 (MQ=255) aGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTCAGCACCCACAGCGGCCAGTT‑GCCGGTACGTGCGTATGGTGT‑GAGTC‑CCGGGGTAGGC‑GTCACG‑TTAGTGGATAACACCTC‑GCGGGTGAACTGCGGGATCATCGACTGAATCTCACCCTACGGGCCAATCA‑CCGCCGTAATGCCgttgtg > 2:115108/1‑250 (MQ=255) gtgcgaaaaTATGGGATGTTTACGGGCACGATAAGAAGGGATTTTTTCCGTCGCGAACGAGGCCTCATCAACACAGCAGCAAACCCAAACAATGCCGTCAGCCCCCCCGGCGGCCAGTT‑GCCGGTACGTGCGTATGGTGT‑GAGTC‑CGGTGGCCGGC‑GTCACG‑TTAGTGGTTACCACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGGGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGt < 2:75137/245‑1 (MQ=255) gTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTCAGCACCCACAGCGGCCAGTT‑GCCGGTACGTGCGTATGGTGT‑GAGTC‑CGGTGGTCGGC‑GTCACG‑TTAGTGGTTAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGt > 1:524383/1‑251 (MQ=255) aggggATGTATCCCGGCCCGAAAAGAAGGTATTATTTCCGTCGCTTCCGCGGACCCATCACCACGGCAGCAAAACCAACCAACGCCGTCGGCCCCCACAGCGGCCAGGT‑CCCGGGCCGTGCGTTTGGTTT‑GATTC‑CGGTGGTCGGC‑GTCACG‑TTAGTGGTTACCACCTC‑GCGGTTGAACTGCGGGATCATCGCCTGATTCTCCCCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCaa < 1:1346/248‑1 (MQ=255) gtattcgcgCACAATAAGAGGTGATTGTTTACGTCGCTGCCGCAGACTAATCAACACAGAAGCAAAACAAACCAATGCCGCCAGCCCCCACAGCGGCCATTT‑GCCGGTACGTGCGTAGGGTGT‑GAGTC‑CGGTGGTCGGC‑GTCACT‑TTAGTGGTTACCCCCTC‑GGGGGTAAACGGGGGGATCTCCGCCTGAATCCCCCCCTGCGGGCCAATCC‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGgc < 2:550350/243‑1 (MQ=255) aTTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACTCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTCAGCACCCACAGCGGCCAGTT‑GCCGGTACGTGCGTATGGTGT‑GAGTC‑CGGTGGTCGGC‑GTCACG‑TTAGTGGTTAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGgcgc > 1:285983/1‑251 (MQ=255) gcccGATAAGAAGGGATTATTTCCGTCGCTGACGCAGACTCACCAACACACCAGCAAAACCAAACAATGCCGGCAGCCCCCACAGCGGCCAGTT‑GCCGGTACGTGCGTATGGTGT‑GAGTC‑CGGTGGTCGGC‑GTCACG‑TTAGTGGTTAACCCCTC‑GCGGGTGAACTGCGGGACCATCGCCTGAATCTCCCCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGc < 1:53934/248‑1 (MQ=255) gaaaaaaaagGGATTTTTCACGTCGCGCCCGCACACTCATAAACACAGCAGCAAAACAAAACAATGCCGACAGCCCCCAAGGAGGCGGTTT‑GCGGGTACGTGCGTGTGGTGT‑GATTC‑GGGTGGTCGGC‑GCCACG‑TTAGTGGTTAACCCCGC‑GGGGGGTACCGGTGGGATCCTCGCCGAAATCTCCCCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTcc < 2:333892/244‑1 (MQ=255) aaagaagGTATTATTAACGTGGCTGACGCAGACTCACCAACACAGCAGCAAACCCAAACAAGGCCGTCGGCCCCCACAGCGGCCAGTT‑GCCGGTACGGGCTTATGGTGT‑GAGGC‑CGGTGGTCGGC‑GTCACG‑TTTTGGGTTAACACCTC‑GCGGGTGAACTGCGGGAACACCGCCTAAATCTCCCCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGGGGGCGCGCCAGCTCCAgc < 1:437736/250‑1 (MQ=255) gtGACGCACACTCAACAACACAGCCGCAAAACCAAACAAGGCCGTCAGCCCCCACGGCGGCCAGTT‑GCCGTTATGTGGGTCTGGTGT‑TAGTC‑CGTTGGCCGGC‑GTCACT‑TTAGTGGTTAACCCCTC‑GGGGGTGAACTGGGGGATCATCACCTGATTCTC‑CCCTTTGGGGCAATAAGCCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTTGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGa < 1:255377/250‑1 (MQ=255) cggACGCAGCCTCATCAACACAGAAGAAAACCCAAAAAAGGCCGTCAGCACCCACAGGGGCCAGTT‑GCCGTTCTGTTCGTATGGTGT‑GAGTC‑CGGGGGTCGGC‑GTCACG‑TTAGTGTTTAACCCCGC‑GCGGGTGAACTGCGGGATCTTCGCCTGAATCTCCCCCTGCGGACCAATCA‑CCGCCGTAATGCCTGTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGa < 1:528797/249‑1 (MQ=255) aaCGCAGACCCACCAACACAGCAGCAAAACCAAACAAGGCGGTCATACCCCACAGCGGCCGGTG‑GCCGGTAGGTGCGTAGGGTGT‑GAGTC‑CGGGGGTCGGC‑GTCACG‑TTAGGGGTTAACCCCTC‑GCGGGGGACCGGTGGGATCATCGCCTGAATTTCCCCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAg < 1:105409/250‑1 (MQ=255) caaaaaacaacaaaaaCCAAACAGTGCCGTCAGCCCCCCCAGGGCCCAGTT‑GCGGGTAGTTGCGTAGGGTGT‑GAGCC‑CGGGTGCGGGT‑GTCACG‑TTAGGGGTTAACCCCCC‑GCGGGTGAACGGCGGGATCATCGCCGGACCCCCCCCCGGCGGCCCAACCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGAc < 2:156545/239‑1 (MQ=255) caACACAGCAGCAAAACCAAACAATGCCGTCAGCACCCACAGCGGCCAGTT‑GCCGGTACGTGCGTATGGTGT‑AGGTCTCGG‑GGGCCGC‑GGCATC‑ATAGAGAATAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTTCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCCTGGAc > 2:422213/1‑251 (MQ=255) cacaGCAGCAAAACCAAACAATGCCGTCAGCACCCACAGCGGCCAGTT‑GCCGGTACGTGCGTATGGTGT‑GAGTC‑CGGTGGTCGGC‑GTCACG‑TTAGTGGTTAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCa > 1:91678/1‑250 (MQ=255) agcagcAAAGCCAAACAGGGCCGTCACCCCCCACGGCGGC‑AGTTTGCGGGTCGGTGCGTGTGGTGT‑GGGTC‑CGGGGGTCGGC‑GTC‑CC‑TTGGGGGGTAACCCCCCCGGGGGGGACGTGCGGGATAAGCCCCTGAACCCCCCCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAg < 2:397933/251‑1 (MQ=255) caAAACCAAACAATGCCGTCAGCACCCACAGCGGCCAGTT‑GCCGGTACGTGCGTATGGTGTAGATCC‑CGGTGGCCGCC‑G‑CATC‑ATAGAGAATAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGACATCTGGAAGTGTTGCCATGGACCAATAGAttt > 2:485226/1‑250 (MQ=255) caAAACCAAACAATGCCGTCAGCACCCACAGCGGCCAGTC‑GCCGGTACGTGCGTATGGTGT‑GAGTC‑CGGTGGGCGGC‑GGCACG‑TTAGTGGTAAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGGTGGGGCTGCGCAACAGTGGGCGCGACAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGATGCCATGGACCAATAGAttt > 2:114884/1‑250 (MQ=255) aaaCAATGCCGTCAGCACCCACAGCGGCCAGTT‑GCCGGTACGTGCGTATGGTGT‑AAATCTCGGTG‑TCGGC‑GTTATG‑ATAGTGGTTAACACCTC‑GAGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGGGGGCGCGCCCGCTCCAGCGCACGAATTCGCGCCATCTGGAAGTGTTGCCATGGGCCAATAGAGTTACAAAAcc > 2:284430/1‑251 (MQ=255) aTGCCGTCAGCACCCACAGCGGCCAGTT‑GCCGGTACGTGCGTATGGTGT‑GGATCTCGG‑GGGCGGCCGT‑ATGATTA‑AAAAAAACACATC‑GCGGGTGAACTGCGGGATCATCGCATGAATATAACCCTGCGGGCCACTCA‑CCGCCGGAATGCCGTTGTTGGGGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCAGTCGCGCCATCTGGAAGGGTTGCACTGGACCAATAGATTTACCAAACCACGcc > 2:437599/1‑250 (MQ=255) gTCAGCACCCACAGCGGCCAGTT‑GCCGGTACGTGCGTATGGTGT‑GAGTC‑CGGTGGTCGGC‑GTCACG‑TTAGTGGTTAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGtt > 1:464804/1‑251 (MQ=255) aGCACCCACAGCGGCCAGTT‑GCCGGTACGTGCGTATGGTGT‑AAGTC‑CGGGGGGCCGC‑GTCACG‑ATAGTAGTTAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGAGTTGCCCTGGACCAATAGATTTCCCAAACCACGCATCGATgg > 2:261487/1‑250 (MQ=255) aCCCACAGCGGCCAGTT‑GCCGGTACGTGCGTATGGTGT‑GAGTC‑CGGTGGTCGGC‑GTCACG‑TTAGTGGTTAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCa > 1:170032/1‑172 (MQ=255) aCCCACAGCGGCCAGTT‑GCCGGTACGTGCGTATGGTGT‑GAGTC‑CGGTGGTCGGC‑GTCACG‑TTAGTGGTTAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTgg > 1:343538/1‑247 (MQ=255) ccacaagcggccgttggccgttaggTGCGTATGGTGT‑GGGTC‑CGGTGGTGGGC‑GTCACG‑TTAGTGGTTAACCCCTC‑GCGGGTGACCTGGGGGATCACCGCCTGAATCCCCCCCGGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATa < 2:546914/227‑1 (MQ=255) caGCGGCCAGTT‑GCCGGTACGTGCGTATGGTGT‑GAGTC‑CGGTGGGCGGC‑GTCACG‑TTAGTGGTTAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTc > 2:36484/1‑250 (MQ=255) t‑GCCGGTACGTGCGTATGGTGT‑GAGTC‑CGGTGGTCGGC‑GTCACG‑TTAGTGGTTAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCg > 1:82717/1‑251 (MQ=255) gggTATGGTGG‑GAGGC‑GGGTGGTGGGC‑GTCACG‑TTAGGGGTTAACCCCCC‑GCGGGTGAGCTGCGGGTTCGTCCCCGTACTCTCCCCCGGCGGCCCAATCC‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGc < 2:372924/248‑1 (MQ=255) gtatgtgttgtgTC‑CGGGGGTCGGC‑TTCCCG‑TTGGTGGTAACCACCTC‑GCGGGTGAACTGGGGGATACTCGCCAGAATCTCACCCTGCGGGCAAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGa < 1:261487/240‑1 (MQ=255) tgtggt‑gAGTC‑CGGTGGTCGGC‑GTCACG‑TTAGTGGTTAACCCCTC‑GCGGGGGAACTGGGGGATCATCGCCTGAATCTCACCCGGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAg < 1:263029/246‑1 (MQ=255) tgt‑gAGTC‑CGGTGGTCGGC‑GTCACG‑TTAGTGGTTAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTAt > 1:370170/1‑251 (MQ=255) gagcc‑cGGTGGTCGGC‑GTCACG‑TTAGTGGTTAACCCCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAACCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATcgc < 1:66853/247‑1 (MQ=255) attC‑CGGTGGTCGGC‑GTCACG‑TTAGTGGTTAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGtgct > 2:279279/3‑113 (MQ=255) ggtcgggtgtgcGGC‑GTCAGG‑TTGGTGGTAAACCCCTC‑GGGTGTGAGCTGGGGGATCCTCGCCTGAACCGCCCCCTGCGGGCAAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATcgcg < 2:343538/240‑1 (MQ=255) ggtggtCGGC‑GTCAGG‑TTAGTTTTTACCCCCTC‑GCGGGTCAACTGCGGAACCATCGCCTCACTCCCCCCCTGCGGCCCACTCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACtt < 2:524383/251‑1 (MQ=255) ggaggtCGGC‑GTCACG‑TTCGTGGTTAACACCTC‑GCGGGTGAACTGCGAGATCATCGCCTGAATCTCACCCTGCGGGCAAATCA‑CCCCCGTACTGCCGTTGTTGGTGCTGCGCAACAGCGGGCGCGCCGGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGTACCAATAAATTTAACAAACCACGCATCGTTGGAGATAGTCAGCCGATAGTCGGTATCCGGTCGGCAGTTCTCTCGCACtt > 2:27382/4‑251 (MQ=255) agtggtCGTC‑GTCACC‑TTAGTGGGTAACACCTC‑GCGGGTGAAATGCGGGATCATCGCCTGAATCTCAACCTGCGGGCCAATCA‑CCAACGTAATGCCGGTGGTGGTGCTGCTCAACAGGGGGCGCGACGGCTCCAGCGCACGCAGTCGAGCCATCTGGAAGTGTTGCAAGGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATGGTCGGTATCCGAGCGGAAGTTATCGTGCACtt > 2:400633/2‑251 (MQ=255) ggtCGGC‑GTCACG‑TTAGTGGTTAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCt > 1:374762/1‑251 (MQ=255) ggtcggcgccaggtgagggtttAACCCCGC‑GCGGGTGAACTGGGGGATCATCGCCTGAATCCCCCCCTGCGGGCCAACCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGc < 1:134558/230‑1 (MQ=255) ggC‑GTCACG‑TTAGTGGTTAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGcc > 1:509221/1‑251 (MQ=255) gcgccgcG‑TTGGTGGTTACCCCCTG‑GCGGTTGAACTGCGGGCTCAGCGCCTGAACCCCCCCCTGCGGGCAAATCG‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCg < 1:115108/245‑1 (MQ=255) cG‑TTAGTGGTTAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATg > 1:504581/1‑251 (MQ=255) tAGTGTTTAACCCCGC‑GCGGGTGAACTGCGGGTTCATCGCCTGAATCTCCCCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGAt < 1:117906/250‑1 (MQ=255) ggTGGTTACCCCCTC‑GGGGGTGAACTGCGGTATCGCCCCCTAAACCTCACCCTGGGGGCCAACCC‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGAtct < 2:298275/250‑1 (MQ=255) gTGGTTAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGCTTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGAtctc > 2:92734/1‑251 (MQ=255) gTGGTTAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGAtctc > 1:387432/1‑251 (MQ=255) gggTTAACCCCTC‑GCGGGTGAACTGGGGGATCAGCGCCTGAATCCCCCCCTGCGGGCAAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCg < 1:538793/250‑1 (MQ=255) tAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGc > 1:341357/1‑251 (MQ=255) gAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTa > 1:442372/1‑250 (MQ=255) atcTGCGGGATCATCGTCTGAATCTCCCCCTGCGGCCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTaa < 2:134636/248‑1 (MQ=255) aCTGCGGGTTCATCGCCTTATTTCCCCCCTGCGGGCCAATCG‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGAt < 1:281803/166‑1 (MQ=255) aCTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGAt > 2:281803/1‑166 (MQ=255) gctggttcatccctggAATCTCCCCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCt < 1:18366/234‑1 (MQ=255) gggATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAAt > 2:218946/1‑251 (MQ=255) gggATCACCCCCTAAATCTCCCCCGGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAAt < 2:341357/251‑1 (MQ=255) atccccgcgtgaaccccACCCGGCGGGCAAACCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGAt < 2:100270/153‑1 (MQ=255) atcatcGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATACCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGAt > 1:100270/1‑169 (MQ=255) atcGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCAtt > 2:292076/1‑251 (MQ=255) gCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGc > 2:274708/1‑251 (MQ=255) ccTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGCAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGTGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGcc > 2:280989/1‑251 (MQ=255) | GATAATGCACTGATGCCGCATCCGGTGAGCGTGCCGAAATATGGGATGTATTCCGGCACGATAAGAAGGGATTATTTACGTCGCTGACGCAGACTCATCAACACAGCAGCAAAACCAAACAATGCCGTCAGCACCCACAGCGGCCAGTT‑GCCGGTACGTGCGTATGGTGT‑GAGTC‑CGGTGGTCGGC‑GTCACG‑TTAGTGGTTAACACCTC‑GCGGGTGAACTGCGGGATCATCGCCTGAATCTCACCCTGCGGGCCAATCA‑CCGCCGTAATGCCGTTGTTGGTGCTGCGCAACAGTGGGCGCGCCAGCTCCAGCGCACGCATTCGCGCCATCTGGAAGTGTTGCCATGGACCAATAGATTTACCAAACCACGCATCGTTGGAGATAGTCAGCAGATAGTCGGTATCCGGGCGGAAGTTATCGCGCACTTGCTCGCCGAGAATGATCTCGTAGCAAATAGCCGCAGTAAGCTCAATACCATTTGCC > NC_000913/689272‑689754 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |