| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,401,452 | 0 | G | A | 28.3% | 91.0 / 13.4 | 53 | F627F (TTC→TTT) | csrD | regulator of CsrB and CsrC decay |
| Reads supporting (aligned to +/- strand): ref base G (28/10); new base A (0/15); total (28/25) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.23e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTTTCCTTTGTTACAAATCTCTGCCTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGG‑TCATTCATCTGCATATGTGCTGCAACAATCTGGCG‑‑AGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTACCAGCGTC > NC_000913/3401204‑3401683 | gTTTCCTTTGTTACAAATCTCTGCCTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGG‑TCATTCATCTGCATATGTGCTGCAACAATCTGGCG‑‑AGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGa > 2:147532/1‑250 (MQ=255) tGTTACAAATCTCTGCCTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGG‑TCATTCATCTGCATATGTGCTGCAACAATCTGGCG‑‑AGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATccc > 1:225451/1‑251 (MQ=255) tACAAATCTCTGCCTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGG‑TCATTCATCTGCATATGTGCTGCAACAATCTGGCG‑‑AGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATcccatt > 1:202327/1‑248 (MQ=255) aCAAATCTCTGCCTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGG‑TCATTCATCTGCATATGTGCTGCAACAATCTGGCG‑‑AGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTg < 2:61306/251‑1 (MQ=255) ctGCCTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGG‑TCATTCATCTGCATATGTGCTGCAACAATCTGGCG‑‑AGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTg > 2:179478/1‑251 (MQ=255) cTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGG‑TCATTCATCTGCATATGTGCTGCAACAATCTGGCG‑‑AGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAac > 1:125035/1‑251 (MQ=255) gAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCACCCGCGTAAGG‑TCATTCATCTGCATATGTGCTGCAACAATCTGGCG‑‑AGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGTTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGGGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAac < 1:235852/249‑1 (MQ=255) gTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGG‑TCATTCATCTGCATATGTGCTGCAACAATCTGGCG‑‑AGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACcg > 1:507522/1‑251 (MQ=255) gTCCAGAAAGGCTTAATGCATCAGCAGCATTCCCCGCCTGTTTGCAACCGCTTAAGG‑TCATTCATCTGCATATGTGCTGCAACAATCTGACG‑‑AGCAGACAAGCACACCCCCATGAGACGCAGCGCGCTTTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATTTTTTTTCACGTTAGTATCAAGTGGCT‑GGGAGGAC‑GCGAAAAAACCCCCTTGCCCGCCTGTAACACcg < 1:522929/251‑1 (MQ=255) gcagcagcagCATTCCTCGCCTGTTTCCACCCGCGAAAGG‑TGATTCATCGGAATAGGTGCGGCAAAAATCGGGCG‑‑AGAAGACAAGCCCCCCCCCATGAGACGCAGCGCGCATTTTTCTACGTGAAAACGGATGAAGCGGCAGGTAAACCCGAT‑TATTTTGGTAAATATTTTTTCCCGTTAGTATCAAGTGGCT‑GTGGGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGTGTCTg < 2:4189/247‑1 (MQ=255) gCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGG‑TCATTCATCTGCATATGTGCTGCAACAATCTGGCG‑‑AGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTg > 2:325845/1‑251 (MQ=255) ttCCTCCCCTGTTTGCAACCGC‑TAAGGGTCATTCTTCTGCATATGTGCTGCAACAA‑‑TGGCGGTAGCAGACAAGCAACCACCCAGGATACGCAGCGCGCATTTTTCTACGAGAAAACGTATAAAGCGGC‑GGTTAAACCGGGGTATTTTTGTAAATATTTTTCCCCGTTAGTATCAGGTGGCT‑TTGGGGGC‑GCAAAAAAATCCCCTTCCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTc < 2:1432/250‑1 (MQ=255) tGCACCCGCTTAAGG‑TCATTCATCTCCATATGTGCTGCAACAAGTTGGCG‑‑AGCAGAAAAGCACACTCCAAGGAGCCGCAGCGCGCATTATCCTGCGTGAAAGCGGATTAAACGGCGGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATGAA‑TGGGTCGGGAGGAC‑GCAAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGcc < 1:206185/250‑1 (MQ=255) cAACCGCGTAAGG‑TCATTCATCTGCATATGTGCTGCAACAATCTGGCG‑‑AGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGt > 1:416297/1‑251 (MQ=255) aaCCGAGTAAGG‑TCATTCATCTGCATATGTGCTGCAACAATCTGGCG‑‑AGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTg > 2:435278/1‑251 (MQ=255) aaGG‑TCATTCATCTGCATATGTGCTGCAACAATCTGGCG‑‑AGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAAc > 1:270603/1‑251 (MQ=255) aaGG‑TCATTCATCTGCATATGTGCTGCAACAATCTGGCG‑‑AGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAAc > 2:312367/1‑251 (MQ=255) ntcattaatCTGCATATGTGCTGAAACAATCTGGTG‑‑AGCAGACAAGCACAATCACATGAGACGAAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTAACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATACACTTGCCCGCCTGTAACACAGCGCTGAATCAGGGTCTGACAATCGCTTCGCGAACGCAAGCCGGTGGCGTAAACCTg > 2:247989/2‑251 (MQ=255) tcatCTGAATATGTGCGGCAACAATCGGGCG‑‑AGCAGACAAGCACCCCCCCATGAGACGCAGCGCGCATTATTCTACGTGAAACCGGATTAACCGGCAGTTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAGGTGGCT‑GTGAGGAC‑GCAAAAAAACCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTg < 1:332002/250‑1 (MQ=255) atatGTGCTGCAACAATCTGGCG‑‑AGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGCAAACCTGGGTGCTGGTCCCg > 2:168524/1‑251 (MQ=255) gtgcgccaacaaTCTGGCG‑‑AGCAGACAAGCACACCCCCATGAGACGCAGCGCGCATTATTCTACGTAAAACCGGATAAACCGGCAGTTTAAACCGAG‑TATTTTTGTGAATATTTTTTCCCTTTATTATCAAGTGGCT‑GTGAGGAC‑GCAAAAAAACCCCTTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAg < 1:555527/244‑1 (MQ=255) gcAACAATCTGGCG‑‑AGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAggg > 2:97180/1‑186 (MQ=255) gcAACAATCTGGCG‑‑AGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCAAAAAAACCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAggg < 1:97180/186‑1 (MQ=255) ggCG‑‑AGCAGACAAGCACACTCCCAGGAGACGCAGCGCGCATTATTCTACGTAAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTGGTAAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGCC‑GCGAAAAAACCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAgg < 1:422714/250‑1 (MQ=255) ataaGACAAGCACACCCCTATGAGACGCAGCGCACATTATTCTACGTGAAAACGGATAAAGCGGAAGGTAAAACCGAG‑TATTTTTGTGAATATTTTTTCCCGTTATTATCAAGTGGCT‑GTGGGGAC‑GCGAAAAAACCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTg < 2:160326/248‑1 (MQ=255) aGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTg > 1:93517/1‑251 (MQ=255) aGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTg > 1:443112/1‑251 (MQ=255) aaaGCACACTCCCATGAACCGCAGCGCTCATTTTTTTAGGTGAAACCGGATTAAACGGCAGGTAAAACCGAT‑TATTTTTGTGAATATTTTTCCACGTTAGTAGAAAGGGGCT‑GTGAGGAC‑GCAAAAAACCCCCCTCGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACcag < 2:49048/250‑1 (MQ=255) aaGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACcagc > 1:357078/1‑251 (MQ=255) aaGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACcagc > 2:285741/1‑251 (MQ=255) aaGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGACTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACcagc > 1:99692/1‑251 (MQ=255) cacTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTACACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTg > 1:35800/1‑251 (MQ=255) acTCCCATGAGACGCAGCGCGCATTATTCTACGAGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATACCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGACCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCCGCTgg > 2:534363/1‑251 (MQ=255) aTGAGACGCGGCGCGCATTATTCTCCGTAAAAACGGATTAAACGGCAGGTTAAACCGAT‑TATCTTTGTAAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGCC‑GCAAAAAAACCCCCTTCCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTcc < 1:510770/251‑1 (MQ=255) tACGTGAAACGGGATTAAACGGCAGGTTAACCCGGT‑TATTTTTTGGAATATTTTTTCACGTTATTAGCAAGTGGGG‑GTGGGGCC‑GCGAAAAAACCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGa < 2:186177/250‑1 (MQ=255) aaagttataaaaCGGCAGTTTAAACCGAG‑TTTCTTTGTGAATTTTTTTTCCTGTTATTATCAAGTGGTT‑GGGAGGGC‑GCAAAAAAACCCCCTGGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGcccc < 1:465385/242‑1 (MQ=255) ggATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGAt > 1:548617/1‑251 (MQ=255) ggATAAAACGGCAGGTTAAACCGAT‑TATTTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCAAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGAt < 1:247989/251‑1 (MQ=255) ttAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATgg > 2:40313/1‑250 (MQ=255) accGGCAGGTTAAACCGAG‑TATTTTTGTGAATATTTTTTCAGGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCAAAAAAACCCCCTTCCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCt < 1:264452/249‑1 (MQ=255) agggcagttaaaacgggttttttttGTAAATTTTTTTTCCCGTTAGTATCAAGTGGC‑‑GGGGGGACCGCAAAAAAACCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCtt < 2:270603/229‑1 (MQ=255) aGGTTAACCCGAG‑TTTCTTTGTGATTTTTTTTTCACTTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAACCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTtct < 1:378684/203‑1 (MQ=255) aGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTtct > 2:378684/1‑203 (MQ=255) naaCCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTc > 2:246126/2‑250 (MQ=255) aaacccttttatttttGTAAATATTTTTTCTTGTTATTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAACTCCCCTGCCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGTTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACt < 1:496693/237‑1 (MQ=255) aaaCCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACATGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTc > 1:371408/1‑250 (MQ=255) gtggAATATTTTTTCATGTGAGTACCAAGTGGGT‑GTCAGGCC‑GAGAAAAATTCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCtt < 2:35800/247‑1 (MQ=255) aaagttttttccccGTTATTATCAAGTGGCT‑GTGAGGAC‑GCAAAAAAGCCCCCTGGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGAt < 1:59687/238‑1 (MQ=255) atTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCa > 2:534091/1‑250 (MQ=255) tttttCACGTTATTATCAAGTGGCT‑GTGAGGAC‑GCAAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAAc < 1:147532/250‑1 (MQ=255) ccactttattATCAAGTGGCT‑GTGAGGCC‑GCAAAAAACCCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGt < 1:325845/241‑1 (MQ=255) aGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTAcc > 1:105225/1‑250 (MQ=255) aatgggggtggggggAC‑GCAAAAAAACCCCCTCGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTACCAGCGTc < 2:125035/238‑1 (MQ=255) | GTTTCCTTTGTTACAAATCTCTGCCTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGG‑TCATTCATCTGCATATGTGCTGCAACAATCTGGCG‑‑AGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAACGGATTAAACGGCAGGTTAAACCGAG‑TATCTTTGTGAATATTTTTTCACGTTAGTATCAAGTGGCT‑GTGAGGAC‑GCGAAAAAATCCCCTTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTACCAGCGTC > NC_000913/3401204‑3401683 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |