mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,483,268 | 0 | T | A | 39.3% | 24.7 / 10.1 | 29 | L24F (TTA→TTT) | emrK | tripartite efflux pump membrane fusion protein EmrK |
| * | NC_000913 | 3,665,702 | 0 | C | A | 37.1% | 41.1 / 13.0 | 35 | A37S (GCG→TCG) | gadX | DNA‑binding transcriptional dual regulator GadX |
| * | NC_000913 | 2,483,254 | 0 | G | A | 31.2% | 38.2 / 10.3 | 32 | S29L (TCA→TTA) | emrK | tripartite efflux pump membrane fusion protein EmrK |
| * | NC_000913 | 4,296,268 | 0 | T | C | 31.0% | 26.5 / 21.7 | 29 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 2,326,450 | 0 | T | G | 28.8% | 124.6 / 10.3 | 59 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 1,674,116 | 0 | G | T | 26.6% | 110.9 / 11.3 | 65 | L68F (TTG→TTT) | tqsA | autoinducer 2 exporter |
| * | NC_000913 | 2,185,199 | 0 | T | G | 25.9% | 236.6 / 18.7 | 112 | T35P (ACC→CCC) | thiM | hydroxyethylthiazole kinase |
| * | NC_000913 | 4,336,901 | 0 | T | A | 24.1% | 112.8 / 12.1 | 58 | Y44F (TAT→TTT) | adiC | arginine:agmatine antiporter |
| * | NC_000913 | 1,234,233 | 0 | T | A | 23.4% | 106.7 / 10.0 | 48 | Y162F (TAT→TTT) | nhaB | Na(+):H(+) antiporter NhaB |
| * | NC_000913 | 1,455,940 | 0 | A | C | 23.4% | 137.4 / 12.4 | 77 | T6P (ACC→CCC) | paaD | phenylacetate degradation protein |
| * | NC_000913 | 3,390,054 | 0 | G | A | 21.4% | 143.5 / 10.3 | 70 | E179K (GAA→AAA) | aaeR | DNA‑binding transcriptional activator AaeR |
| * | NC_000913 | 3,492,028 | 0 | C | T | 21.4% | 98.7 / 10.3 | 45 | Q90Q (CAG→CAA) | ppiA | peptidyl‑prolyl cis‑trans isomerase A |
| * | NC_000913 | 4,296,286 | 0 | C | T | 21.4% | 43.9 / 11.2 | 28 | intergenic (+492/+150) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 1,674,157 | 0 | A | T | 21.2% | 148.2 / 10.4 | 67 | Y82F (TAT→TTT) | tqsA | autoinducer 2 exporter |
| * | NC_000913 | 3,585,015 | 0 | T | A | 20.3% | 163.7 / 11.4 | 59 | I86K (ATA→AAA) | yrhB | putative heat shock chaperone |
| * | NC_000913 | 505,440 | 0 | C | A | 20.0% | 143.5 / 12.6 | 62 | A176E (GCA→GAA) | ushA | 5'‑nucleotidase/UDP‑sugar hydrolase |