Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,390,054 | 0 | G | A | 21.4% | 143.5 / 10.3 | 70 | E179K (GAA→AAA) | aaeR | DNA‑binding transcriptional activator AaeR |
Reads supporting (aligned to +/- strand): ref base G (39/16); new base A (0/15); total (39/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.17e-07 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
CATTGGCTGTTCTTCAACTATGGCACAAAATGTT‑CTCGCCGGGCTGACAGCCAAAATGCTGAAAGAATACCCAGGTTTGAGCGTCAATCTGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGT > NC_000913/3389804‑3390303 | cATTGGCTGTTCTTCAACTATGGCACAAAATGTT‑CTCGCCGGGCTGACAGCCAAAATGCTGAAAGAATAACCAGGTTTGAGCGTCAATCTGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GAACCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCCGGGCGCGATGCCAA‑TGGTGGC‑GTGCGCCGCGAAAAGC‑TATCTCCC‑ACAATACGGCATACCgg > 2:381808/1‑251 (MQ=255) gCTGTTCTTCAACTAGGGCACAAAATGTT‑CTCGCCGGGCTGACAGCCAAAATGCTGAAAGAATACCCAGGTTTGAGCGTCAATCTGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGaaaaa < 1:427771/251‑1 (MQ=255) gTTCTTCAACTATGGCACAAAATGTT‑CTCGCCGGGCTGACAGCCAAAATGCTGAAAGAATACCCAGGTTTGAGCGTCAATCTGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑c < 1:327492/249‑1 (MQ=255) tcAACTTTGGCACAAA‑TGTTTCTTGCCGGGCTGACAGCCAAAATGTTGAAAAAATACCCAGGTTTGAGCTTCTATCGGG‑TTACCGGATATCCAGCCCCCTCCCTGATTGCCGACGGTCTGGATTTGGT‑GATCCGCGTCGGCTCGTTGCAGG‑ATTCCAGCC‑GGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGTTGTT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGAAAAAA‑Ccc‑gcc < 2:476853/249‑1 (MQ=255) aCTATGGCACAAAATGTT‑CTCGCCGGGCTGACAGCCAAAATGCTGAAAGAATACCCAGGTTTGAGCGTCAATCTGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGAttt > 2:176229/1‑251 (MQ=255) gCACAAAATGTT‑CTCGCCGGGCTGACAGCCAAAATGCTGAAAGAATACCCAGGTTTGAGCGTCAATCTGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGagt > 1:130816/1‑249 (MQ=255) gCACAAAATGTT‑CTCGCCGGGCTGACAGCAAAAATGCTGAAAGAATACCCAGGTTTGAGCGTCAATCTGG‑TTACCGGAATTCCAGCCCCCGCCCGGATTGCCGAGGGTTTGGATGTGGT‑GACCCGCGTCGGCGCTTTGCAGG‑ATTCCAGCC‑GGTTTTCCCGCCGTCGGGGGGCGATGCAAA‑TGGGGGT‑GTGCCCCGGGAAAAGC‑TACCTCAC‑ACAATCCGGCATACCGAAAAAA‑CCC‑GCCGATTTGagtag < 1:339446/251‑1 (MQ=255) caAAATGTT‑CTCGCCGGGCTGACAGCCAAAATGCTGAAAGAATACCCAGGTTTGAGCGTCAATCTGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGtc > 1:88202/1‑250 (MQ=255) ccGCCGGGCTGACAGCCAAAATGCTGAAAGAATACCCAGGTTTGAGCGTAAATCTGG‑TGACCGGAATTCCGGCCCCCGCCCTGATTGCCGACGGTCTGGTTGTGGT‑GACCCGCGTCGGGGCGTTGCAGG‑ATTCCAGCT‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGGGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAAGCCGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCtt < 1:111410/250‑1 (MQ=255) ccGCCGGGCTGACAGCAAAAACGCCGAAAGAATCCCCAGTTTTGCGCGTCAATTTGT‑TTACCGGATTTCCAGCCCCGGCCCGTATTGCCGGGGGTCTGGATGTGGT‑GATCCGCGTCGGGGCGTTGCGGT‑ATTCCAGCC‑TTTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACACTCCGGCATACCGAAAAAC‑CCC‑GCCGATTTGAGTAGTCATTCATGGCtt < 1:350/250‑1 (MQ=255) cGCCGGGCTGACACCCAAAATGCTGAAAAAATCCCCAGGTTTGAGCGTCAATTTGG‑TTCCCGAAATCCCAGCCCCCGACCTGTTTGCCGAGGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATCCCAGCT‑TTTTTCCCCGCCGTCTGGGCGCGAGCCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGT‑TATTTCAC‑ACAATCCGGCATACCGGAAAAC‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTg < 1:239248/251‑1 (MQ=255) ggCTGACAGCAAAAATGCGAAAAGAAACCCCAGGTTGGGGCGT‑AATGTGGGTTGCCGGAAGTCCCGCCCCCGCCGTGTTGGCGGACGGTCTGGAGGTGGT‑GGCCCGCGTCGGGGGTTTGCAGA‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGGGATGCGAA‑TGGGGTT‑GTGCGCCGCGAAAAGA‑TATCTCAC‑ACAATACGTCTTACCGAAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATAc < 2:422310/251‑1 (MQ=255) tGACAGCCAAAATGCTGAAAGAATACCCAGGTTTGAGCGTCAATATGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGC‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGCTTTGAGTATACATTCATGGCTTGAATACAGc > 2:35930/1‑251 (MQ=255) cAGCCAAAATGCTGAAAGAATACCCAGGTTTGAGCGTCAATCTGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTg > 1:413699/1‑251 (MQ=255) ccAAAATGCTGAAAGAATACCCAGGTTTGAGCGTCAATCTGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGCTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGTTGGT‑GTGCGCCGCGAAAAGC‑TCTCTCAC‑ACAATACGGCATCCCGGAAAAC‑CCC‑GACGGTTTGAGTAGTCATTCATAGCTTGAATAAAGCGAGCgg > 2:321992/1‑251 (MQ=255) aaTGCTGAAAGAATACCCAGGTTTGAGCGTCAATCTGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCg > 2:543018/1‑251 (MQ=255) gCTGAAAGAATACCCAGGTTTGAGCGTCAATCTGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑CTTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGATGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGCTTTGAGTAGTCATTCATGGCTTGACAACCGCGTGCGGCCCgccc > 2:76772/1‑248 (MQ=255) cTGAAAGAATACCCAGGTTTGAGCGTCAATCTGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACa > 2:49412/1‑250 (MQ=255) tGAAAGAATACCCAGGTTTGAGCGTCAATCTGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAAt > 2:228710/1‑251 (MQ=255) aaGAATCCCCAGGTTTGAGCGTCAATCTGG‑TTACCGGATTTCCAGCCCCCGCCCTGATTGCCGACGGTCTGGATTGGGT‑GATCCGCGTCGGGGCTTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGAGGCCAA‑TGGTGGT‑GTGCGCCGCAAAAAGC‑TATCTCAC‑ACAATACGGCATACCGAAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGaa < 1:47649/251‑1 (MQ=255) aGAATACCCAGGTTTGAGCGTCAATCTGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATgcat > 1:75962/1‑248 (MQ=255) aTACCAAGGTTTGAGCGTCAATCTGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGTCGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTAATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTg > 2:108580/1‑251 (MQ=255) aGGTTTGAGCGTCAATCTGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTg > 1:206201/1‑250 (MQ=255) tGAGCGTCAATTTGG‑TTGCCGGAATCCCCGCCCCCGCCCTGATTGCAGCGGGTCTG‑TTGTGGTTGTCCCGCGTGGGCGCGTTGCAGG‑TTCCCAGCC‑TGTTGTCCCGCCTCCTGGGCGCGAGGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATCCGGCATACCGGAAAAC‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGc < 2:348459/250‑1 (MQ=255) gAGCGTAAATCTGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTGGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATCCGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCa < 1:347888/250‑1 (MQ=255) aGCGTCAATCTGG‑TTACCGGAATTCCAGCCTCCGACCTGATTGCCGACGTTCTGGATGGGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATGCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGA‑GTGCGCCGCGACAAGC‑TCTCTCAC‑ACAATACGGCCTACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTTAATACAGCGTGCGGCCCGACACAGAATTTGAACTGAACGCAcc > 2:501336/1‑251 (MQ=255) gCGTCAATCTGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCg > 1:236899/1‑251 (MQ=255) aTCTGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCACGATGCAGG‑ATTCAAGCC‑TGTTTTCCCGCCGTCTGGCCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGCTTTGAGTAGTCATTCATGGCATGAATACAACGGGCGGCCCGACAATGAATTTGCACTGATCGCACCGGAAggg > 1:449749/1‑251 (MQ=255) gg‑TTCCCGGATTTCCGGCCCCCGCCCGGTTTGCCGTCGGTTGGGGTGTGGT‑GTTCCGCGTCGGCGCGTTGAAGG‑ATTCCAGCC‑TTTTTCCCCGCCGTCTGGGCGCGATGCAAA‑GGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑AAAATCCGGCATACCGAAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGAtct < 2:358181/251‑1 (MQ=255) cgggattcccAGCCCCCAACCTGTTGGGCGACGGTGTGGATGTGGA‑GACCGGCGTCGGCG‑TTGGGAGGGATACCGGCC‑TGTTTCCCCGCCGTCGGGGCGCGATGCAAG‑TGGGGGG‑GGGCGCCGCAAAAAGT‑TATCTCAC‑AAAATACGGCAT‑CCGAAAAAAACCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACt < 2:398120/243‑1 (MQ=255) aaTTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GCTCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGcc > 1:375674/1‑251 (MQ=255) ccccGACCTGATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCcac > 1:533876/1‑251 (MQ=255) cttaTTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGCAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGGACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCAAAAGGa > 2:23367/4‑249 (MQ=255) gATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGa > 1:476198/1‑247 (MQ=255) tgacTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGACAAC‑CCC‑GCCGATTTGAGTAGTCATTCATGGCGTGAATACAGCATGCGGTCCGTCAATGTATTTGAACTGATCGCACCGGAAGGGATCTTGACTCTCCTGATCTCACAGGGAGGATTTGTGACTa > 2:42949/4‑250 (MQ=255) ggtgtgtttttggt‑gATCCGCTTCGGCGCGTCGCAGG‑TTTCCACCC‑TGTTTCCCCGCCTTTGGGGCGCGATGCAAA‑TGGTGTT‑GTGCGCCGCAAAAACC‑TATCTCAC‑ACATTACGGCGTCCCGAAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTaa < 1:109915/241‑1 (MQ=255) gTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTCCCCGCCGTCTGGGCGCGATGCCAA‑TGGGGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAC‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAAt < 1:116886/251‑1 (MQ=255) cTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATg > 1:194124/1‑250 (MQ=255) gtggtactcgggtgggccgggTTGAAGG‑ATGCCAGCC‑TGTTTTCCGCCCTTCGGGGCGCGAT‑CCAAGTGGTGGT‑GGGCGCCTGAAAAAGC‑TATCTCAC‑ACAATCCGGCAT‑CCAGAAAAA‑CCCCGCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGAt < 2:258457/231‑1 (MQ=255) gggt‑gATCCGCGTCGGCGCGTTGAAGG‑ATCCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GGGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAC‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATg < 1:144652/250‑1 (MQ=255) gcgTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTg > 1:204828/1‑251 (MQ=255) cgcgTTGCGGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGTCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATCCGGCATACCGGAAAAC‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCgctggc < 1:86641/251‑1 (MQ=255) gcgTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAC‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGGGACTAATGATCCGATGACGCTGGTGCgctggct > 2:438243/1‑251 (MQ=255) tGCAGG‑‑TTCCAGCCCTGTTTCCCCGCCGTCTGGGCGCGATGCAAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAA‑ACAATACGGAATACCGAAAAAC‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGAc < 1:319645/250‑1 (MQ=255) ggCAGG‑ATGCCAGGC‑TGTTTCCCCCCTGGCGGGGCGCGAGGCGAA‑GGGTGGT‑GTGCGCCAGAAAAAGA‑TATCTCAA‑ACAGTACGGCATCCCGGAAAAC‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGAc < 2:164056/249‑1 (MQ=255) cgaaGG‑ATTCCGGCC‑TGTTTTCCCGCCGGCTGGGCGCGGACCCGA‑GGGGGGT‑GT‑CCCCGGGGAAAGCCTATCTCCC‑ACAATGGGGCATACAAAAAAAG‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGGCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGAc < 1:180535/247‑1 (MQ=255) cAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGAcggc > 1:527838/1‑251 (MQ=255) gCC‑TGTTTACCCGCGTTCTGGGCGCGATGCCAA‑TG‑TGGTTGTGCCCCGCGAAAAGC‑TATC‑CACCACAATACGCCTTACGGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCggg < 1:381808/251‑1 (MQ=255) c‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAGA‑CCC‑GCCGATTTGAGTAGTCAGTCATGGCTTGAATACGGCGTGCGGCCCGACAATGAATTTGATCTGATCGCACCGGAAGGGAGCTCGACGCGCCTGATCCCACAAAGAAGGTTTGTGACTAATGATCCGAGGACGCTAGAGCGCAGGCTGActgctgggtccaggg > 1:271377/1‑236 (MQ=255) c‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGAt > 1:115967/1‑251 (MQ=255) tGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGGGCCGGGATc > 1:276720/1‑251 (MQ=255) ggttgtccctcctgcggggagcgATGCAAA‑TGGTGGT‑GGGCGCCGCAAAAATC‑TATCTCAC‑ACAATACGGCATACAGAAAAAC‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATc < 2:386533/231‑1 (MQ=255) tCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGGCggggttgcctc > 2:253614/1‑243 (MQ=255) ccccGCCGTCGGGGCGGGATGCAAA‑GGGTGGT‑GGGCCCCGCGAAAAGC‑TATCTCAC‑ACAAACCGGCATCCCGAAAAAC‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCt < 2:194124/249‑1 (MQ=255) gTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGGGGCGGGAttgactaccggccg > 2:105466/1‑238 (MQ=255) gATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCTCCTAAGCGCCGCTGATGTggg > 1:53209/1‑251 (MQ=255) aTGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGAc > 2:438082/1‑212 (MQ=255) aTGCCAA‑GGGGGGT‑GTGCCCCGCGAAAAGT‑TATCTCCC‑ACAATCCGGCATACCGAAAAAC‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGAc < 1:438082/212‑1 (MQ=255) gCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATTGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGAATTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGGTCGCCtccgaagctctgatgtgggggg > 1:77087/1‑230 (MQ=255) ggt‑gTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCAGACCGGAAAAC‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACgaga < 1:294993/251‑1 (MQ=255) tgCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCCACGTGCCGCTGATGGGGGGGATCAACGAGATCa > 1:79404/1‑250 (MQ=255) ggccgcAAAAAGC‑TATCCCCC‑ACAATCGGGCAAACCGAAAAAC‑CCC‑GCCGATTTGAGTATTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATc < 2:103128/250‑1 (MQ=255) cgAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGACGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCCGGGTCGCCTCCGTGCCGCTGCTGTGGGGGTTCAACCAGATCAATTGTggg > 2:131499/1‑251 (MQ=255) aaaGC‑TATCTCAC‑ACAATACGGAATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAg < 1:380520/251‑1 (MQ=255) aaaaaccgccttccGGAAAAA‑CCCCGCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCctgc < 2:400477/239‑1 (MQ=255) aaaTACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCctgct < 1:228710/250‑1 (MQ=255) aTACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGGGCCGCCGATGTGGGGGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCtgctgc > 1:480038/1‑251 (MQ=255) aTACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGCGCCGGGATCGCCTACGGGCCGCTGGTGTGGGGGGTCAACGAGATCAATCGTGGGGGGCTgggggtgctcctgc > 1:456213/1‑239 (MQ=255) ggcaaaaCCGAAAAAC‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCcgc < 2:456434/245‑1 (MQ=255) ggCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGGGATCAACAAGATCAAACGTGGGGGGCTGGAGATCCTGCTGCcgcg > 1:483108/1‑251 (MQ=255) cATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGGGCCGGGATCGCCTACGTGCCGCTGATGTGGGGGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGtt > 1:457771/1‑251 (MQ=255) ggAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCCACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGGGCTGGGGATCCTGCTGCCGCGTTACCAGt > 1:80244/1‑251 (MQ=255) | CATTGGCTGTTCTTCAACTATGGCACAAAATGTT‑CTCGCCGGGCTGACAGCCAAAATGCTGAAAGAATACCCAGGTTTGAGCGTCAATCTGG‑TTACCGGAATTCCAGCCCCCGACCTGATTGCCGACGGTCTGGATGTGGT‑GATCCGCGTCGGCGCGTTGCAGG‑ATTCCAGCC‑TGTTTTCCCGCCGTCTGGGCGCGATGCCAA‑TGGTGGT‑GTGCGCCGCGAAAAGC‑TATCTCAC‑ACAATACGGCATACCGGAAAAA‑CCC‑GCCGATTTGAGTAGTCATTCATGGCTTGAATACAGCGTGCGGCCCGACAATGAATTTGAACTGATCGCACCGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCCTGCTGCCGCGTTACCAGT > NC_000913/3389804‑3390303 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |