Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,665,7020CA37.1% 41.1 / 13.0 35A37S (GCG→TCG) gadXDNA‑binding transcriptional dual regulator GadX
Reads supporting (aligned to +/- strand):  ref base C (16/6);  new base A (1/12);  total (17/18)
Fisher's exact test for biased strand distribution p-value = 2.97e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

TTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGGAGAACAGGATGATAATGTGTGATGTTCTACGGGCAG  >  NC_000913/3665459‑3665944
                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                   
ttAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAAcc                                                                                                                                                                                                                                              >  2:262713/1‑251 (MQ=255)
          tttACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCAc                                                                                                                                                                                                                                      <  1:419789/248‑1 (MQ=255)
                         tGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGat                                                                                                                                                                                                                    >  1:217766/1‑251 (MQ=255)
                         tGCATAGCGAAGATTCTTATTATGCGATAGTTGAGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACAAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCATTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGat                                                                                                                                                                                                                    >  2:166282/1‑251 (MQ=255)
                                              cTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGCAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTg                                                                                                                                                                                                >  2:475927/1‑250 (MQ=255)
                                                gCGATAGTTGCGAAACTCCCTGAAAAACAGAAATATCCCTACTAAAGTGAGGAACGAGAAATGAAAAAACTTTTTTATGGGAATGAAGATTTAATGCCTCCTCTTTGAGCATCGGGAAAAAAAAGAAAAGCGTGTCCCTTGACACGAAAACAAAATTTACAACACATTTATCTACTCGAATTTGGCTTGCACCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTgag                                                                                                                                                                                              <  1:136384/250‑1 (MQ=255)
                                                   aTAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGcc                                                                                                                                                                                                                                  <  2:449858/211‑1 (MQ=255)
                                                   aTAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGcc                                                                                                                                                                                                                                  >  1:449858/1‑211 (MQ=255)
                                                           gcAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATg                                                                                                                                                                                  >  1:177566/1‑251 (MQ=255)
                                                                  cctaaaaacaaagAATATCTCTACTACAGTGATGAAGAAGTAATGAAGATATTTTTTTATTGCAATGAATATTTATGGCCTCCGCCGGGGACACGGGAAAAAATAATGAACGCGTGTCCCTTTAACTAAATAAAAACTGTTAAACACACTTACCTCCCACATTTTGGCGCGCCCCCGCAAAAACCAGGCCACCGCCATTAAAATAGCGATATTCACCATAACCATGGTGAGAATATATTTATGTCTTGCa                                                                                                                                                                           <  1:6534/238‑1 (MQ=255)
                                                                          aCAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAAt                                                                                                                                                                   >  1:143016/1‑251 (MQ=255)
                                                                           cAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAAtt                                                                                                                                                                  >  1:462203/1‑251 (MQ=255)
                                                                                     tctACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTcc                                                                                                                                                        >  1:75367/1‑251 (MQ=255)
                                                                                           aaaGTGATGAACGATTAATGAAGAATCTTTTTTATGTGCATTAAGATTTAATCCCTCCTCCGTAACAACCGGAAAAAATAAAGAAAGCGTGTCTCTTGACAAAAATAAAAAATTTTAAACACACTTTTCTACCAGAATTGGGCTTCAACCCAAAAAACCCAGGTCTCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTa                                                                                                                                                  <  1:170169/249‑1 (MQ=255)
                                                                                                    aaCGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGt                                                                                                                                                   >  2:77393/1‑241 (MQ=255)
                                                                                                    aaCGAGAAATGAAAAAACTTTTTTATGTGAATGAAGTTTTAATGCCTCCCCCTTGAGCATCGGGAAAAATAATGAAAGCGTGTCCCTTGACACAAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCACCCGAAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGt                                                                                                                                                   <  1:77393/241‑1 (MQ=255)
                                                                                                         gaaaTGAAGAAATTTTTTTATGTGCCTGAAGATTTAATGCCTCCTCCTTGAGCCTCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATATCTTGCATACGCAATTAGACACTTCCCATGTAGTGATTGCATAGtt                                                                                                                                    >  2:453323/3‑251 (MQ=255)
                                                                                                                       tttttATGTTAATAAAGATTTAATGCCCCCTCCTGGAGCATCGGGAAAAAAAATAAAGGCTTTCCCCTTGCCACAAATAAAAATTTTCCAACACATTTATCTCCTCAAATTGGGTTTCCACCCAAAAAACCCAGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTAc                                                                                                                       <  2:213835/250‑1 (MQ=255)
                                                                                                                           ttttgtactggaataTTTATTGCCCCCCCCTTGAGCATCGGAAAAAATAAAGAAGGCGTGTCCCTTGACACGAAAAAAAAATTTTAAACACCCTATCCTCCACGATTTTGTCTTCAACCCAAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATa                                                                                                                    <  2:516703/236‑1 (MQ=255)
                                                                                                                             tgtgCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAAc                                                                                                                 >  2:28951/1‑250 (MQ=255)
                                                                                                                                  aataaaaaTTTAATGCCTCCTCCTTGAGCAACGGGAAAAAAAATGAAAGCGTTCCCCTTGACAAAAATACAAAATTTTCAACACCTTTATCTACTAGAATTTGGCTGGCATCCAAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATAtt                                                                                                            <  2:75367/244‑1 (MQ=255)
                                                                                                                                     gAAGTTTTAATGCCTCCTCCTAGAACAGGGAGAAAAATAATAAAAGCGTTCCCCTTGAAAAAAATAAAAAATTTACAACACACTTATCTCCTAAAATTGGGCTTGCATCCGAAAAAACCAGTTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACt                                                                                                         <  2:190723/251‑1 (MQ=255)
                                                                                                                                     gAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACt                                                                                                         >  2:55371/1‑251 (MQ=255)
                                                                                                                                     gAAGATTTAACGCCTCATCCTTGAGCATCGGTAGAAATAATGGCAGCGGGTCTCTTGTCACGACTACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCAGCCGAAATATCCAGGTCACCGCCATTAAAATCGCGAAATTCACCATTCACCATGGTGAGAATATATTTATGACTTGCATACGCAATTAGCCAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACCTATTACt                                                                                                         >  2:474483/1‑251 (MQ=255)
                                                                                                                                              acgccccctcctTGAGCATCGGGAAAAATAATGAAAGGGTGTCCCTTGACAAGAATAAAAATTTTACAACACCTTTATCTCCTCGAATTTGGCTTGCACCCGCAAAACCCGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTaa                                                                                                <  1:21356/245‑1 (MQ=255)
                                                                                                                                                              cATCGGGAGAAATAATGAAGGTGTGTCCCGTAACACTAATACAAATTTTCCACCCCACTTATCCCCTCGATTTGGTCTTGCATCCGCAAAACCCAGGTCTCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCct                                                                                <  1:292878/251‑1 (MQ=255)
                                                                                                                                                                     aaaaaaaaatGAAGGCGTGTCCCTTGACACAAATACAAAATTTTAAACACACTTATCTCCTCGATTTTGGCTTGCATCCGAAAAAACCAGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAg                                                                          <  1:352224/244‑1 (MQ=255)
                                                                                                                                                                      aaaaTAAAGAAAGCGTGTCCTTTAAAACAAAAAAAAATTTTTCAACCCTTTTATCTCCTGGAATTTGGTTTCCACCCAAAAAACCCGGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTc                                                                        <  2:462203/250‑1 (MQ=255)
                                                                                                                                                                                aaaGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAattgatt                                                               >  1:113902/1‑251 (MQ=255)
                                                                                                                                                                                 aaGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAattgattg                                                              >  2:144466/1‑251 (MQ=255)
                                                                                                                                                                                                cacGAATAAAAAATTTTCACCCCACTTCACATCTAGAATTTGGCTGTCCACCGAAAAACCCCGGTCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTaaa                                               <  2:310248/251‑1 (MQ=255)
                                                                                                                                                                                                 acGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAAc                                              >  2:19674/1‑251 (MQ=255)
                                                                                                                                                                                                                      acacacTTATCTCCTATAATTTGGCTTACTACCGAAAAACCCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGGAGAACAGgat                            <  1:352329/251‑1 (MQ=255)
                                                                                                                                                                                                                                          ttgggCTTGCATCCCAAAAAACCAGATCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGGAGAACAGGATGATAATGTGTGATGTTCt          <  1:221587/247‑1 (MQ=255)
                                                                                                                                                                                                                                                    ccacccGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGGAGAACAGGATGATAATGTGTGATGTTCTACGGGCAg  <  1:475927/246‑1 (MQ=255)
                                                                                                                                                                                                                                                           |                                                                                                                                                                                                                                                   
TTAATGCTCTTTTACGTAGCATTTCTGCATAGCGAAGATTCTTATTCTGCGATAGTTGCGCAACTTCCTGAAAAACAGGAATATCTCTACTACAGTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTGACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTTGGCTTGCATCCGCAAAAACCAGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAATGTAGCACGCCGCCCTCTTAAGTCAAATTGATTGATAAATAAATTTAAACGAAGCGGGAGAACAGGATGATAATGTGTGATGTTCTACGGGCAG  >  NC_000913/3665459‑3665944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: