mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 23 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,037,496 | 0 | A | T | 53.8% | ‑0.8 / 50.5 | 39 | intergenic (+161/‑23) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA |
| * | NC_000913 | 4,296,268 | 0 | T | C | 45.8% | ‑6.0 / 26.0 | 24 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 729,710 | 0 | T | G | 43.5% | 37.7 / 12.2 | 48 | V43G (GTG→GGG) | rhsC | rhs element protein RhsC |
| * | NC_000913 | 2,228,275 | 0 | T | C | 42.5% | 43.5 / 14.8 | 47 | intergenic (‑1005/‑707) | yohF/yohP | putative oxidoreductase YohF/putative membrane protein YohP |
| * | NC_000913 | 1,658,167 | 0 | G | T | 39.1% | 9.7 / 13.1 | 23 | L33F (TTG→TTT) | ynfE | putative selenate reductase YnfE |
| * | NC_000913 | 3,782,908 | 0 | T | G | 37.2% | 29.3 / 15.1 | 58 | T252P (ACC→CCC) | gpsA | glycerol‑3‑phosphate dehydrogenase |
| * | NC_000913 | 646,777 | 0 | G | T | 35.5% | 31.0 / 13.7 | 31 | Q245K (CAA→AAA) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| * | NC_000913 | 2,029,274 | 0 | C | T | 34.5% | 35.7 / 10.7 | 30 | K31K (AAG→AAA) | yedI | DUF808 domain‑containing inner membrane protein YedI |
| * | NC_000913 | 2,378,968 | 0 | C | T | 34.2% | 36.1 / 16.8 | 41 | E98K (GAA→AAA) | menD | 2‑succinyl‑5‑enolpyruvyl‑6‑hydroxy‑3‑ cyclohexene‑1‑carboxylate synthase |
| * | NC_000913 | 433,634 | 0 | T | G | 32.4% | 73.8 / 11.7 | 75 | G60G (GGT→GGG) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase |
| * | NC_000913 | 4,336,901 | 0 | T | A | 31.7% | 61.5 / 12.6 | 42 | Y44F (TAT→TTT) | adiC | arginine:agmatine antiporter |
| * | NC_000913 | 1,174,622 | 0 | G | A | 30.6% | 53.1 / 11.7 | 36 | P182S (CCC→TCC) | ycfT | inner membrane protein YcfT |
| * | NC_000913 | 3,731,713 | 0 | G | A | 30.0% | 44.6 / 10.4 | 30 | E195K (GAA→AAA) | xylF | xylose ABC transporter periplasmic binding protein |
| * | NC_000913 | 4,346,675 | 0 | T | G | 28.4% | 121.6 / 11.1 | 75 | T218P (ACC→CCC) | fumB | fumarase B |
| * | NC_000913 | 1,466,201 | 0 | T | C | 28.1% | 100.0 / 11.5 | 61 | pseudogene (810/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| * | NC_000913 | 2,930,047 | 0 | G | T | 28.1% | 91.8 / 11.3 | 57 | G158C (GGC→TGC) | sdaB | L‑serine deaminase II |
| * | NC_000913 | 3,153,894 | 0 | A | C | 27.7% | 74.2 / 10.2 | 47 | H111P (CAC→CCC) | yghB | DedA family protein YghB |
| * | NC_000913 | 2,147,745 | 0 | G | T | 25.9% | 115.6 / 10.3 | 59 | L24F (TTG→TTT) | yegD | HSP70 family protein YegD |
| * | NC_000913 | 2,828,506 | 0 | T | G | 25.3% | 128.4 / 11.9 | 84 | V257G (GTG→GGG) | srlD | sorbitol‑6‑phosphate 2‑dehydrogenase |
| * | NC_000913 | 3,486,386 | 0 | G | A | 24.1% | 111.6 / 10.2 | 54 | A89A (GCG→GCA) | crp | DNA‑binding transcriptional dual regulator CRP |