| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,174,622 | 0 | G | A | 30.6% | 53.1 / 11.7 | 36 | P182S (CCC→TCC) | ycfT | inner membrane protein YcfT |
| Reads supporting (aligned to +/- strand): ref base G (16/9); new base A (0/11); total (16/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.53e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCATACCGAATCGTTGCTCGTATTGATAAAACAGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACAC‑AGGTCATTATTGT‑TGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATCACACTGTTCATTCCCCACCACGGCGTGGGAA‑CGAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCAC > NC_000913/1174373‑1174868 | gcATACCGAATCGGTGCTCGTATTGATAAAACAGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACAC‑AGGTCATTATTGT‑TGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATCACACTGTTCATTCCCCACCACGGCGTGGGa < 1:511842/251‑1 (MQ=255) aCCGAATCGTTGCTCGTATTGATAAAACAGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACAC‑AGGTCATTATTGT‑TGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATCACACTGTTCATTCCCCACCACGGCGTGGGAA‑Cg < 1:146955/250‑1 (MQ=255) aaaaCAGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACAC‑AGGTCATTATTGT‑TGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATCACACTGTTCATTCCCCACAACGGCGTGGGAA‑CGAAA‑TTAACCGCCACACTcagcagg > 2:20795/1‑250 (MQ=255) aTCACCACAATCGATACCAGAGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTCAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACAC‑AGGACATTATTGT‑TGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATCACACTGTTCATTCCCCACCACGGCGTGGGAA‑CGAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGa > 2:537359/1‑250 (MQ=255) cacaATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACAC‑AGGTCATTATTGT‑TGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATCACACTGTTCATTCCCCACCACGGCGTGGGAA‑CGAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTg > 1:132846/1‑251 (MQ=255) catctacaCCAGCGAAAACAGCAGCAAGATAGAAAACACCCAGGCCCCGCCCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCACCGGCCCCTCTTAAACAC‑AGTTCATTATTGT‑TGCGCAAAACC‑ATGCGCAAAGGCTGTAAAAAGGAAAATTG‑CGGATCACCCTGTTCATTCCCCACCACGGGGGGGGAA‑CGAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCa < 2:118731/244‑1 (MQ=255) aTACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACAC‑AGGTCATTATTGT‑TGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATCACACTGTTCATTCCCCACCACGGCGTGGGAA‑CGAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCa > 1:118731/1‑246 (MQ=255) ccAGCGAAAACAGCAGAGAAAAATAAAACAACCCGCCCCCGCCCGCCAGAACGGTAAGAAAAGAAGCCAGCAGAGGAGGGCGGCGCACCGCCCCCTCTTAAACAC‑AGGTCATTATTGT‑CGCGCCAAACC‑AGGCGCCAGGGCTGAAATAAGGCAAATTG‑CGGATCACCCTGTCCACCCCCCCCCACGGCGTGGAAA‑CGAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGa < 2:6043/251‑1 (MQ=255) cAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACAC‑AGGTCATTATTGT‑TGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATCACACTGTTCATTCCCCACCACGGCGTGGGAA‑CGAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGAc > 1:293499/1‑251 (MQ=255) acaacgGCAGCGAGAGATAAAACAACCAGGCCCCGCCCGCAAGACGGGTAAAAAAAGAACCCATCAGCAGAGGGCGGCGAAACGGCACCTCTT‑AAAACGTGGTCATTATTGT‑GGCGCCAACCC‑AGGCACCAGGGCTGTAATATGAAAAATTG‑CGGCCCACCCGGTTCTCTCCCCCCCACGGCG‑GTGAA‑AGAAAAGTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCGGACGGCTa < 2:345808/251‑1 (MQ=255) aaacagaaggtataTAGAAAACACCCAGGCACCGCCCGCCAAAGAGGAAAACAAAGAAGCCCTCAGCGGATGGCGGCGCCACGGCACTGCTATAACAC‑AGGTCATTATTGT‑TGCGCCAACCC‑GCGCGCCAAGGCTGTAATAGGCCAAAGTG‑CGAATCCCCCGGTTAATCCCCCCCCACGGCGTGGAAA‑CGAAT‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTaa < 2:430321/238‑1 (MQ=255) caacCAGGCCCCGACCGCCAAAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCCCCTCTTAAACAC‑AGGTTATTATTGT‑TGCGCCAAACC‑ATGCGCCAAGGCTGAAAAAAGG‑AAATTGGCGGATCACTCTGTTCATCCCCCCCCACGGCGGGGAAA‑CAAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTaaaaa < 1:522522/233‑1 (MQ=255) caacCAGGCACCGACCGCCAGAACGGTACGCACAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACAC‑AGGTCATTATTGT‑TGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATCACACTGTTCATTCCCCACCACGGCGTGGGAA‑CGAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTaaaaa > 2:522522/1‑233 (MQ=255) aGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACAC‑AGGACATTATTGT‑TGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATCACACTGTTCATTCCCCACCACGGCGTGGGAA‑CGAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAACATTTTACATACCACGAAATAgcc > 1:467632/1‑248 (MQ=255) gcccccgcccgCCAGACCGGTAAGAAAAGAAGCAATCAGCAGATGGGGGCACACCGGCCCCTCATAAACAC‑AGTTATTTATGGT‑TGCGCCAACCC‑ATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGACCACCCTTTTCATCCCCCACCCCGGGGTGGAAA‑CAAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACaa < 2:186374/243‑1 (MQ=255) gAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACAC‑AGGTCATTATTGT‑TGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATCACACTGTTAATTCCCCACCACGGCGTGGGAA‑CGAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAgccg > 2:551694/1‑202 (MQ=255) gAACGGTAAGAAAAAAACCCATCGGCAGATGGGGGCCCAACGGCACCTCTTAACCCC‑AGGTAATTTTTGG‑TGCGCAAAACA‑AGGCCCAAAGGTTTTAAAAAGG‑AAATGGGCGTATCACACTGTTAATCCCCCCCCAGGGCGTGGAAA‑CAAAA‑TAAGCCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACg < 1:551694/205‑1 (MQ=255) aaaaaaaaaacaccaccagaagctGGCGGAGCAACTGCTCCTTTTTAACAC‑TGGTCATTTTTTG‑TGCGCCACACC‑ATGCGCAAAGGCTGATATAAGGAATATTG‑CGGATCACCTTGTTTTTCCCCCACAACGTCGTGGGAA‑CAAAA‑ATAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGCTACcac < 2:51852/228‑1 (MQ=255) aaaGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACAC‑AGGTAATTATTGT‑TGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATCACACTGTTCATTCCCCACCACGGCGTGGGAA‑CGAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCt > 1:370718/1‑251 (MQ=255) agATGGCGGCGCAACGGCACCTCTTTAACAC‑AGGTCATTATTGT‑TGCGCCACACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATCACACTGTTCATTCCCCACCACGGCGTGGGAA‑CGAAA‑TTAACCGCCACACTCAGCCGTAAAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATCCCACAAGCTGGTGCTGGCGGTGat > 1:346192/1‑251 (MQ=255) ccAACGGCCCTTCTGTAACAC‑AGGTCATTATTTG‑TGCGCCAAACC‑ATCCACCAAGTCTGTAATAAGGCATATGG‑CGGCTCACACTTTCCATTCCCCCCCGCGGCGTGGGAA‑CGAAT‑TAAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGc < 1:540069/250‑1 (MQ=255) ggCACCTCTTTAACAC‑AGGTCATTATTGT‑TGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATCACACTGTTCATTCCCCACCACGGCGTGGGAA‑CGAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGa > 1:319144/1‑250 (MQ=255) cACCTCTTTAACAC‑AGGTCATTATTGT‑TGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATCACACTGTTCATTCCCCACCACGGCGTGGGAA‑CGAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGGTCAATCCGTGCAGGaaac > 2:257113/1‑249 (MQ=255) aCCTCTTTAACAC‑AGGTCATTATTGT‑TGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATCACACTGTTCATTCCCCACCACGGCGTGGGAA‑CGAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTc > 1:440261/1‑251 (MQ=255) accac‑aGGTCATTAT‑GTGTG‑GCCAAACCCATGCCCCAAGGCTGTAAAAAGGAAAATTG‑CGGTCCACCCTTTTCATCCCCCCCCCCGGTG‑GGGAATCAAAA‑TAAACCTCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTg < 2:358173/248‑1 (MQ=255) cAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATCACACTGTTCATTCCCCACCACGGCGTGGGAA‑CGAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGGGGAATCGGCATAAGCGGCATTgg > 1:136130/1‑249 (MQ=255) aaccc‑ATGCGCAAAGGCTGAAAAAAGACAAATTG‑CGGATCACACTGTTCATCCCCCACCACGGCGTGGAAA‑CGAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAgg < 1:351393/248‑1 (MQ=255) aCC‑ATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATCACACTGTTCATTCCCCACCACGGCGTGGGAA‑CGAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTg > 2:404830/1‑185 (MQ=255) cccaggcgcAAAGGCTGTAATAAGGAAAATGG‑CGAATCACCCTGTTCATCCCCCACCACGGCGTGGAAA‑CAAAA‑TAAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACATATACCACAAGCTg < 1:404830/180‑1 (MQ=255) aagccgaaaataaGGCAAAGGG‑CGAATCACACTGTCCACCCCCCCCCAGGGGGTGGAAA‑CAAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAAt < 1:257113/243‑1 (MQ=255) ataaGGCAAATTG‑CGAAACCCCCTGCTCATCCCCCCCCGCGGGGTGGAAA‑CAAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAg < 2:129466/251‑1 (MQ=255) aaaGGAAAATTG‑CGGATCCCACTGTTCATTCCCCACCAGGGCGGGGGAA‑CGAAT‑TAAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAgg < 2:132846/250‑1 (MQ=255) aatgg‑CGGAACACACTGTTCATCCCCCACCACGGCGTGGGAA‑CGAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTgccagc < 1:33625/247‑1 (MQ=255) atccgccgttttatgccccACCCGGGCGTGGAAC‑CAAAA‑TTTACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAATCGCCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGtt < 1:510772/236‑1 (MQ=255) cccACCACGGGGTGGAAA‑ATAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATGCCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGTCATTGGAGGCATTGCTTAAATCGCGCGCAGGTGCCAGCCACTGGTTCAGCGCACTTAACgcc < 2:474869/251‑1 (MQ=255) gTGGGAA‑CGAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGGACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCCGGTGCCAGCCACTGGGTCAGCGCCCTTAAAGCCAGACACTGcac > 1:421566/1‑251 (MQ=255) | GCATACCGAATCGTTGCTCGTATTGATAAAACAGCTTCATGATCACCACAATCGATACCAGCGACAACAGCAGCGAGATAGTAAACAACCAGGCACCGACCGCCAGAACGGTAAGCAAAGAAGCCATCAGCAGATGGCGGCGCAACGGCACCTCTTTAACAC‑AGGTCATTATTGT‑TGCGCCAAACC‑ATGCGCCAAGGCTGTAATAAGGCAAATTG‑CGGATCACACTGTTCATTCCCCACCACGGCGTGGGAA‑CGAAA‑TTAACCGCCACACTCAGCAGTACAAACAAGGCGAATAGTGGCAGCGCCAGACGGCTAAAAATTTTACATACCACGAAATAGACAATTAACGCATACAGATACCACAAGCTGGTGCTGGCGGTGATCATCCCGTGCAGGAACTCACCGGTGGAATCGGCATAAGCGGCATTGGAGGCATTGCTTAAATCGCGCTCAGGTGCCAGCCACTGGTTCAGCGCACTTAACGCCAGCCACTGCAC > NC_000913/1174373‑1174868 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |