mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 77 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,033,612 | 0 | T | G | 38.2% | 122.0 / 12.5 | 68 | G156G (GGT→GGG) | trkH | K(+) transporter TrkH |
| * | NC_000913 | 1,825,061 | 0 | G | A | 37.0% | 77.8 / 17.0 | 46 | intergenic (‑124/+79) | ves/spy | HutD family protein Ves/ATP‑independent periplasmic chaperone |
| * | NC_000913 | 4,336,901 | 0 | T | A | 35.6% | 70.9 / 20.8 | 45 | Y44F (TAT→TTT) | adiC | arginine:agmatine antiporter |
| * | NC_000913 | 1,328,465 | 0 | T | G | 34.8% | 183.0 / 15.7 | 91 | T216T (ACA→ACC) | yciK | putative oxidoreductase |
| * | NC_000913 | 3,751,537 | 0 | A | C | 33.3% | 100.6 / 10.0 | 55 | V111G (GTT→GGT) | yiaT | outer membrane protein YiaT |
| * | NC_000913 | 2,984,441 | 0 | A | C | 32.8% | 146.9 / 10.2 | 67 | G384G (GGT→GGG) | yqeF | putative acyltransferase |
| * | NC_000913 | 501,557 | 0 | A | C | 32.8% | 144.0 / 10.4 | 61 | intergenic (+128/+5) | gsk/ybaL | inosine/guanosine kinase/putative transporter YbaL |
| * | NC_000913 | 1,684,736 | 0 | A | C | 32.4% | 129.7 / 10.3 | 69 | T160P (ACC→CCC) | tus | DNA replication terminus site‑binding protein |
| * | NC_000913 | 1,222,596 | 0 | G | A | 31.4% | 57.5 / 10.6 | 35 | F13F (TTC→TTT) | ymgD | PF16456 family protein YmgD |
| * | NC_000913 | 2,337,723 | 0 | A | C | 31.1% | 158.0 / 10.9 | 78 | G566G (GGT→GGG) | gyrA | DNA gyrase subunit A |
| * | NC_000913 | 2,745,089 | 0 | A | C | 30.3% | 136.5 / 12.6 | 68 | V84G (GTG→GGG) | trmD | tRNA m(1)G37 methyltransferase |
| * | NC_000913 | 3,465,167 | 0 | G | T | 29.6% | 94.2 / 18.5 | 54 | C29F (TGT→TTT) | gspM | Type II secretion system protein GspM |
| * | NC_000913 | 3,206,435 | 0 | C | T | 29.4% | 59.2 / 10.0 | 34 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 4,098,155 | 0 | A | C | 29.3% | 212.2 / 12.7 | 94 | L140F (TTA→TTC) | rhaS | DNA‑binding transcriptional activator RhaS |
| * | NC_000913 | 3,665,702 | 0 | C | A | 29.2% | 90.1 / 14.5 | 49 | A37S (GCG→TCG) | gadX | DNA‑binding transcriptional dual regulator GadX |
| * | NC_000913 | 3,862,664 | 0 | C | G | 29.2% | 48.9 / 12.8 | 49 | A314P (GCA→CCA) | glvC | putative PTS enzyme II component GlvC |
| * | NC_000913 | 803,869 | 0 | G | T | 28.6% | 102.8 / 17.3 | 56 | V123L (GTG→TTG) | ybhJ | putative hydratase YbhJ |
| * | NC_000913 | 1,604,237 | 0 | C | T | 28.4% | 135.3 / 19.4 | 67 | S64L (TCG→TTG) | lsrD | Autoinducer‑2 ABC transporter membrane subunit LsrD |
| * | NC_000913 | 385,797 | 0 | T | G | 27.9% | 160.7 / 12.4 | 71 | V189G (GTG→GGG) | tauA | taurine ABC transporter periplasmic binding protein |
| * | NC_000913 | 343,444 | 0 | A | G | 27.8% | 192.9 / 15.6 | 90 | G187G (GGA→GGG) | yahK | aldehyde reductase, NADPH‑dependent |