| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 385,797 | 0 | T | G | 27.9% | 160.7 / 12.4 | 71 | V189G (GTG→GGG) | tauA | taurine ABC transporter periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base T (14/35); new base G (19/0); total (35/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.44e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGCGCTGGTGGTAAAGAAAACTATCAGCAAACCGGAAGATCTGATTGGCAAACGCATCGCCGTACCGTTTATCTCCACCACCCACTACAGCCTGCTGGCGGCACTGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAAAACATCAGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTA > NC_000913/385549‑386046 | aGCGCTGGTGGTAAAGAAAACTATCAGCAAACCGGAAGATCTGATTGGCAAACGCATCGCCGTACCGTTTATCTCCACCACCCACTACAGCCTGCTGGCGGCACTGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGgtgt < 2:666792/251‑1 (MQ=255) cgcTGGTGGTAAAGAAAACTATCAGCAAACCGGAAGATCTGATTGGCAAACGCATCGCCGTATCGTTTATCTCCACCACCCACTACAGCCTGCTGGCGGCACTGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTg < 1:420925/251‑1 (MQ=255) gcTGGTGGTAAAGAAAACTATCAGCAAACCGGAAGATCTGATTGGCAAACGCATCGCCGTACCGTTTATCTCCACCACCCACTACAGCCTGCTGGCGGCACTGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAA‑GCCCCGGGAAAAAAAGGCAAGGGGTTgg > 1:94924/1‑250 (MQ=255) tggtAAAGAAAACTATCAGCAAACCGGAAGATCTGATTGGCAAACGCATCGCCGTACCGTTTATCTCCACCACCCACTACAGCCTGCTGGCGGCACTGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGGTAAC‑GCCCTGGGAAAAGACGGCCAGGGGTTGGCCGA‑t > 1:711596/1‑251 (MQ=255) gAAAACTATCAGCAAACCGGAAGATCTGATTGGCAAACGCATCGCCGTACCGTTTATCTCCACCACCCACTACAGCCTGCTGGCGGCACTGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCCGGGAAAAGACGGCAAGGGGGTGACCGA‑GTCTgta > 1:622485/1‑248 (MQ=255) aaaaCTATCAGCAAACCGGAAGATCTGATTGGCAAACGCATCGCCGTACCGTTTATCTCCACCACCCACTACAGCCGGCTGGCGGCCCTGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACa < 1:462018/251‑1 (MQ=255) cAGCAAACCGGAAGATCTGATTGGCAAACGCATCGCCTTCCCGTTTATCTCCACCACCCACTACAGCCTGCTGGCGGCACTGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCggg < 2:622485/250‑1 (MQ=255) aaaCCGGAAGATCTGATTGGCAAACGCATCGCCGTACCGTTTATCTCCACCACCCACTACAGCCTGCTGGCGGCACTGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGGAAAAGACGGCAAGGTGGTGACCGG‑TTCTGAACAgggtggggcgtg > 1:164197/1‑241 (MQ=255) cGGAAGATCGGATGGGCAAACGCATCGCCGTACCGTTGATCTCCACCACCCACCACAGCCTGCTGGCGGCACGGAAACACGGGGGCAGTAAACCCGGGAAAGTGGAGATGGTGAACCTGCAGCCGCCCGCGAGTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGgc < 2:47892/251‑1 (MQ=255) gATTGGCAAACGCATCGCCGTACCGTTTATCTCCACCACCCACTACAGCCTGCTGGCGGCACTGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGGAAAAGACGGCAAGGGGGTGACCGA‑TTCTGAACAGGGCGGGGAGGGGGGCGCGCCAACGc > 1:177920/1‑251 (MQ=255) ttGGCAAACGCATCGCCGTACCGTTTATCTCCACCACCCACTACAGCCTGCTGGCGGCACTGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑CGCCTGGGAAAAAAAGGCCAAGTGTTGGCCCC‑ATCTGAACAGGGCGGGCAGGGGTGGGCGCCAAccccg > 2:558219/1‑247 (MQ=255) gCAAACGCATCGCCGTACCGTTTATCTCCACCACCCACTACAGCCTGCTGGCGGCACTGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGAc < 2:303326/251‑1 (MQ=255) gTACCGTTTATCTCCACCACCCACTACAGCCTGCTGGCGGCACTGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAA‑GCCCTGGGAAAAGACGGCAAGGGGGTGGCCGA‑TTCTGAAAAGGGCCGGGAGGGGGGGGCGCCCACGCTGGGCGGCTGGGTGGGgcg > 1:633872/1‑251 (MQ=255) gTTTATGTCCACCACCCACTACAGCCTGCTGGCGGCAATGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCAGCGATTATAGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGGTTAT‑GCCCCGGCAAAAAACTGCAAGGTGTTGACAGA‑CGCTGTCCAGCGCTGGCAGTGGGGCGAGCCAACGCTGGACGACTCTGTGGGGCGC‑aacg > 2:619286/1‑249 (MQ=255) aTCTCCACCACCCACTACAGCCTGCTGGCGGCACTGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGAtt < 1:337052/250‑1 (MQ=255) tcCACCACCCACTACAGCCTGCTGGCGGCACTGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTTAC‑GCCCCGGGAAAGGAGGGCAAGGGGTTTGCCGAGTTC‑GTACAGGGCGGGGGGGGGGGGGCGCCAACGCGGGCCGTCTgggggggggggaaaaatttttc > 2:789173/1‑232 (MQ=255) ccaccaCCCACTACAGCCTGCTGGCGGCACTGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGcc < 2:731966/251‑1 (MQ=255) caccacCCACTACAGCCTGCTGGCGGCACTGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGGAAAAGACGGCAAGGGGTTGACCGA‑TTCTGAACAGGGCGGGCAGTGGGGGGCGCCCACGCTGGGCGGCTGGGTGGGGGGG‑AAAGATTTTTCCg > 1:340193/1‑251 (MQ=255) ccacccacTACAGCCTGCTGGCGGCACTGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAACCGCCC‑GGACAAAGAAGGGAAGGGGGTGACCGC‑TTCTTAAAAGGGGGGGCAGGGGGGGGCGCCCACGCCGGGCGGCTGGGTGGGGCGC‑aaaaagttttccgcg > 2:662187/1‑239 (MQ=255) cacccacTACAGCCTGCTGGCGGCACTGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCCGGGAAAAAACGGCAAAGAGTTGAACGA‑TTCTGAACAGGGCGGGGAGGGGGGCGCGCCAACGCCGGGCGGCTGGGGGGGGGGC‑GAAGATTTTGTCgagg > 2:119925/1‑250 (MQ=255) gAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTTAC‑GCCCTGGAAAAAAACGGCCAGGGGTTGGCCGA‑TTCTGAACAGGGCGGGCCGTGGGGCGGGCCAACGCTGGACGTCTGGGTGGGGCGC‑CAAGATTTTTCCCGGAAACATCCTGAGGGCGGGAAAACGTTCg > 1:653168/1‑251 (MQ=255) gAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTc < 2:177920/250‑1 (MQ=255) aaaCACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGc < 1:690214/251‑1 (MQ=255) gggCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAGAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAgcg < 1:306023/251‑1 (MQ=255) gCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGcc < 1:154324/251‑1 (MQ=255) aaCCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGAt < 1:119925/251‑1 (MQ=255) aaCCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGAt < 1:709752/251‑1 (MQ=255) cGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTc < 1:360724/217‑1 (MQ=255) aGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAAc < 1:439745/251‑1 (MQ=255) aTTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGAGAGATATTGATGGTGCTTCTGTCTGGGCACCGGCGGTTAAC‑GCCCCGGGAAAAGACGGCAAGGGGGTGAGCGC‑TTATGACAAAGTCGGGCCGAGGGGCGCGCCAACGCTGGCGGGCTCGGGGGGGGGC‑AAAGAATTTGGCGAGAAAAATCCTTGGGGCGCGAAAACGCTCGCTAAAAACGCCCTCCATGCTCCGCaaacgaaca > 1:387718/1‑243 (MQ=255) gtgAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCCGGAAAAAGACGGCAAGGGGTTGACCGA‑ATCTGTACAGGGTGGGCAGGGGGGGGGGCCAACGCTGGGCGGCTGGGGGGGGCGCCAAGGATTTT‑CCCAGAAACATCCCCGGGGCGTGGAAGAGTTCTCCAAAAGCGCCAGCGATGCTCacccaccggacaatgg > 2:226143/1‑236 (MQ=255) ccTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAAcc < 1:455348/251‑1 (MQ=255) cgATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTg < 1:589314/251‑1 (MQ=255) gATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTgn < 2:340193/251‑2 (MQ=255) gATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCCGGGAAAAGACGGCAAGGGGTTGACCGA‑TTCTGAACAGGGCGGGCAGGGGGGCGCGCCAACGCTGGACGTCTGGGGGGGGGGC‑AAAGATTTTGCCGAGAAACAACCTGAGGGCGGGAAAGCGTTCGCTAAAAACGCCATCCATGCTCAGCAAACGGACATTGCTAAACCAGACCGGTGGCTg > 1:461323/1‑250 (MQ=255) gATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCCGGAAAAAGACGGCAAGGGGGTGACCGA‑TTCTGAAAAAGTCGGGCAGGGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGGGC‑AAAAATTTTGCCGAGAAAAATCCCGAGGGCGGGAAAACGGTCGCTAAAAACGCCATCGATTGTCAGCCAACGTAAAATTCTAACCCAAACGGGTGGCtt > 1:79292/1‑249 (MQ=255) aTCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGGGTTGACCGA‑TTCTGAAAAGGGCGGGGCGTGGGGGGCGCCAACGCTGGACGTCTGGGGGGTGCGG‑AAAGATTTTTCCGCGAAACATCCTGAGGGCGTGAAAGCGGTCGCTAAAAACGCCCTCGATGCTCAGCCACCGTACATTTCTAACCCCGACGGGGGGCTGAAA‑c > 1:688346/1‑250 (MQ=255) gCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGGAAAAGACGGGAAGGTGTTGACCGA‑TTCTGGAAAGGGCGGGGAGGGGGGCGCGCCCAAGCTGGGCGTCTGGGGGGGGCGC‑AAAGATTTTGCCGAGGAACACCCTGAGGGCGGGAAAGCGGTCGGTAAAAGAGCCATCGATGCTCCGCAACCGGACATTGCTAACCCAAACGTGTGGCTGAAA‑Caacc > 2:517430/1‑248 (MQ=255) tGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGGAAAAGACGGGAAGGGGGTGACCGA‑ATCTGAAAAGGGCGGGCAGTGGGGGGCGCCCACGCTGGGCGTCTGGGTGGGGCGC‑AAAGATTTTTTCGAGAAACAACCTGAGGGCGGGGAAACGGTCGCGAAAAACGCCATCCATGCTCCGCAAACGGACATTTCTAAACCAAACGAGTGGGTGGAA‑CAGACgg > 2:728974/1‑251 (MQ=255) ccTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCCGGAAAAAAACGGCCAGGGGTTGAACGG‑TTCTGGACAGGTCGGGCGGTGGGGGGCGCCCACGCTGGGCGTCTGGGGGGGGCGC‑AAAAAATTTGCCGAGGAAAATCCTGAGGGCGTGGAAGAGTTCTCTAAAAGCGCCCTCGATGCTCAGCAACACTACATTTCTAACCCAGACCTGTGGCTGGAA‑CAGCCggc > 2:737416/1‑249 (MQ=255) aGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAA‑GCCCTGGAAAAAAAAGGCAAAGGGGTGACCGA‑TTCTTAAAAGGGCGGGCCGTGGGGCGCGCCAACGCCGGACGTCTGGGTGGGGCGC‑AAAGAATTTGCCGAGAAAAATCCTGAGGGCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAAACA‑CCGGGAAACATc > 1:681042/1‑251 (MQ=255) cGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGGAAAAGACGGCCAGGGGGTGGCCGA‑TTCTGAACAGGGCGGGGAGGGGGGGGCGCCAAAGCTGGACGGCTGGGGGGGGGGC‑CAAGATTTTGGCGGGGAAAATCCTGAGGGCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGGAAACGGACAATGCTAACCCAGAAGGGGGGCTGAAA‑AAGCCGGAAAAAATcc > 1:727586/1‑249 (MQ=255) cGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGCGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACan < 2:363799/209‑2 (MQ=255) atatTGATGGTGCTTATGTCTGGGCACCGGCGGTGAAC‑GCGCTGGAAAAAGGCGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCGAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAAAACATCAGCAAACTg < 2:21931/251‑1 (MQ=255) ggTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAAAACATCAGCAAACTGGCGCGttt < 1:342916/251‑1 (MQ=255) gTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAAAACATCAGCAAACTGGCGCGTTTa < 1:737416/251‑1 (MQ=255) gTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAAAACATCAGCAAAc < 1:447770/232‑1 (MQ=255) gTCTGGGCACCGGCGGTTAAC‑GCCATGGAAAAAAACGGGCAGGGGTTGACCGA‑TTTTTAAAAGGGCGGGGACAGGGGCGCGCCAACGCTCGGCGCCTGGGGGGTGCGC‑AAAGAGTTTGCGGAGAAACACCCTGAGGTGGGGGAAACGCTCGCTAAAAACGCCATCGAAGCTCAGCAACCGTACATTGCTAACCCAGAGGAGGGGCTGAAA‑CACACGGaaaaaacccgcaaaa > 2:447770/1‑221 (MQ=255) ccGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGaaa > 1:153040/1‑135 (MQ=255) ccGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGaaa < 2:153040/135‑1 (MQ=255) ggcggTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGGGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAATCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAC‑CAGCCGGAAAACATCAGCAAAACGGCGCGTTTAAGCGGAGTGCCTGAAGGTg > 2:775516/1‑251 (MQ=255) gcggTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAAAACATCAGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGa < 1:330238/251‑1 (MQ=255) gcggTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAAAACATCAGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGa < 1:488181/251‑1 (MQ=255) cggTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAAAACATCAGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGAc < 1:22070/251‑1 (MQ=255) ggTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAgc < 2:193808/145‑1 (MQ=255) ggTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAgc > 1:193808/1‑145 (MQ=255) gTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGc > 2:600879/1‑160 (MQ=255) gTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGc < 1:600879/160‑1 (MQ=255) gTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAAAACATCAGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGt > 1:219611/1‑251 (MQ=255) aaC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAAAACATCAGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTcc > 1:317206/1‑251 (MQ=255) ccTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTaaa < 2:473574/133‑1 (MQ=255) ccTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTaaa > 1:473574/1‑133 (MQ=255) ggAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAAAACATCAGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTgg > 1:537275/1‑251 (MQ=255) ggAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAAAACATCAGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTg < 2:204093/250‑1 (MQ=255) gAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAAAACATCAGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGt < 2:69510/251‑1 (MQ=255) naaaaGACGGCAAGGAGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGCACGTCTGGGTGGCGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGGCGTGAAAGCGTTGGCTAAAAGCGCCATCGATGCTCAGAAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAACACATCAGCACACTGGAGAGTTTAAGCGGCGGGCCTGAAGGAGACGTTCCGGGGCTGGTg > 2:357842/2‑251 (MQ=255) aaaaGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAAAACATCAGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTg > 2:703700/1‑250 (MQ=255) gCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAAAACATCAGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTg > 2:162820/1‑239 (MQ=255) gCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAAAACATCAGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTg < 1:162820/239‑1 (MQ=255) gCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAAAACATCAGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAAt < 1:728974/251‑1 (MQ=255) ggTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAAAACATCAGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCt < 1:226143/251‑1 (MQ=255) ggTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAAAACATCAGCAAACGGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGG‑CTGGTGAAGGGGAATACCTa < 2:13308/251‑1 (MQ=255) | AGCGCTGGTGGTAAAGAAAACTATCAGCAAACCGGAAGATCTGATTGGCAAACGCATCGCCGTACCGTTTATCTCCACCACCCACTACAGCCTGCTGGCGGCACTGAAACACTGGGGCATTAAACCCGGGCAAGTGGAGATTGTGAACCTGCAGCCGCCCGCGATTATCGCTGCCTGGCAGCGGGGAGATATTGATGGTGCTTATGTCTGGGCACCGGCGGTTAAC‑GCCCTGGAAAAAGACGGCAAGGTGTTGACCGA‑TTCTGAACAGGTCGGGCAGTGGGGCGCGCCAACGCTGGACGTCTGGGTGGTGCGC‑AAAGATTTTGCCGAGAAACATCCTGAGGTCGTGAAAGCGTTCGCTAAAAGCGCCATCGATGCTCAGCAACCGTACATTGCTAACCCAGACGTGTGGCTGAAA‑CAGCCGGAAAACATCAGCAAACTGGCGCGTTTAAGCGGCGTGCCTGAAGGTGACGTTCCGGGGCTGGTGAAGGGGAATACCTA > NC_000913/385549‑386046 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |