mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,429,984 | 0 | T | G | 40.7% | 73.1 / 12.5 | 54 | L41V (TTG→GTG) | cycA | D‑serine/alanine/glycine/:H(+)symporter |
| * | NC_000913 | 1,825,056 | 0 | G | A | 36.7% | 35.1 / 11.1 | 30 | intergenic (‑119/+84) | ves/spy | HutD family protein Ves/ATP‑independent periplasmic chaperone |
| * | NC_000913 | 1,658,167 | 0 | G | T | 35.3% | 23.2 / 12.5 | 34 | L33F (TTG→TTT) | ynfE | putative selenate reductase YnfE |
| * | NC_000913 | 2,745,089 | 0 | A | C | 31.9% | 123.4 / 12.0 | 69 | V84G (GTG→GGG) | trmD | tRNA m(1)G37 methyltransferase |
| * | NC_000913 | 1,245,234 | 0 | G | T | 30.6% | 46.8 / 11.5 | 36 | L25F (TTG→TTT) | ycgY | uncharacterized protein YcgY |
| * | NC_000913 | 39,025 | 0 | G | T | 29.8% | 71.0 / 10.8 | 47 | Q31K (CAA→AAA) | caiB | gamma‑butyrobetainyl‑CoA:carnitine CoA transferase |
| * | NC_000913 | 37,338 | 0 | T | G | 28.6% | 137.0 / 10.5 | 72 | T163P (ACC→CCC) | caiC | carnitine‑‑CoA ligase |
| * | NC_000913 | 3,177,748 | 0 | C | A | 28.2% | 54.3 / 11.7 | 39 | E55* (GAG→TAG) | nudF | ADP‑sugar pyrophosphatase |
| * | NC_000913 | 1,159,837 | 0 | A | G | 27.3% | 85.8 / 12.0 | 44 | I572T (ATC→ACC) | fhuE | ferric coprogen/ferric rhodotorulic acid outer membrane transporter |
| * | NC_000913 | 4,296,268 | 0 | T | C | 27.3% | 26.0 / 11.2 | 25 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 1,911,779 | 0 | C | T | 26.7% | 81.8 / 10.7 | 45 | S266S (TCG→TCA) | htpX | protease HtpX |
| * | NC_000913 | 3,978,862 | 0 | A | C | 26.3% | 125.9 / 10.5 | 79 | T88P (ACC→CCC) | wzyE | enterobacterial common antigen polymerase |
| * | NC_000913 | 3,401,459 | 0 | T | C | 25.5% | 107.1 / 10.9 | 51 | D625G (GAT→GGT) | csrD | regulator of CsrB and CsrC decay |
| * | NC_000913 | 3,697,798 | 0 | C | T | 25.4% | 103.2 / 11.2 | 55 | F447F (TTC→TTT) | bcsE | c‑di‑GMP‑binding protein BcsE |
| * | NC_000913 | 4,171,557 | 0 | C | G | 24.5% | 79.8 / 33.1 | 49 | intergenic (+13/‑80) | rrlB/rrfB | 23S ribosomal RNA/5S ribosomal RNA |
| * | NC_000913 | 4,161,148 | 0 | G | A | 21.7% | 85.1 / 10.7 | 46 | E28K (GAA→AAA) | fabR | DNA‑binding transcriptional repressor FabR |