| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,161,148 | 0 | G | A | 21.7% | 85.1 / 10.7 | 46 | E28K (GAA→AAA) | fabR | DNA‑binding transcriptional repressor FabR |
| Reads supporting (aligned to +/- strand): ref base G (35/1); new base A (0/10); total (35/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.70e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCCTGACGTTTTATTGGATTTTTATCGACGATACTCTCCGTTTAAGCGGCAGGTTTCCGCTGTACGTAAAAGAACCGGCCAAAGAATTGCAGTAAATATGTTTTATTGCGTTACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTC > NC_000913/4160923‑4161395 | cccTGACGTTTTATTGGATTTTTATCGACGATACTCTCCGTTTAAGCGGCAGGTTTCCGCTGTACGTAAAAGAACCGGCCAAAGAATTGCAGTAAATATGTTTTATTGCGTTACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGCCGTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCtggtgg > 2:280695/1‑250 (MQ=255) gACGTTTTATTGGATTTTTATCGACGATACTCTCCGTTTAAGCGGCAGGTTTCCGCTGTACGTAAAAGAACCGGCCAAAGAATTGCAGTAAATATGTTTTATTGCGTTACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCCGCAGTACTTTTGG‑CAAGG‑ATTAAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAAACC‑GCCGTTCGCTGGTGGAAGcc > 1:263147/1‑251 (MQ=255) aCGTTTTATTGGATTTTTATCGACGATACTCTCCGTTTAAGCGGCAGGTTTCCGCTGTACGTAAAAGAACCGGCCAAAGAATTGCAGTAAATATGTTTTATTGCGTTACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCg > 1:298561/1‑251 (MQ=255) tttATTGGCTTTTTATCGACGCTACTCTCCGTTTAAGCGGCAGGTTTCCGCTGTACGTAAAAGAACCGGCCAAAGCATTGCAGTAAATATGTTTTATTGCGTTACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGACAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCAtt > 2:184211/1‑251 (MQ=255) ttttATCGACGATCCTCTCCGTTTAAGCGGCAGGTTTCCGCGGTACGTAAAAGAACCGGACAAAGAATTGCAGTAAATATGTTTTATTGCGTTACCGTTCTTTCACAATAATGGAGAAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGAAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAGCAAACCA‑GCCGTACGCTGGTGGCAGCCGCATTTAGCCAAtt > 2:267212/1‑250 (MQ=255) ttttATCGACGATACTCTCCGTTTAAGCGGCAGGTTTCCGCTGTACATAAAAGAAACGGCCAAAGAATTGCAGTAAATATGTTTTATTGCGTTACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTAATTCTATGGT‑ATAGTGCCAGCAGTACATTTGG‑CCAGG‑ATTCAGTCATCGTGATGGGCGAAAGAACGCAAAAAAAAGAAAAAACCC‑GCCGTTCGCTGGCGGAAGCCGCATTTAGCCAAtt > 2:263357/1‑250 (MQ=255) acgacgaTACTCTCCGTTTAAGCGGCAGGTTTCCGCTGTACGGAAAAGAACCGGCCAAAGAATTGCAGTAAATATGTTTTATTGCGTTACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGA‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTTCCGGGCGTAAGAGCGCAACAAAAAGCCAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGc > 2:352982/2‑251 (MQ=255) aaGCGGCAGGTTTCCGCTGTACGTCAAAGAACCGGCCAAAGAATTGCAGTAAATATGTTTTATTGCGTTACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCATACATCGTGCTGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGCAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGc > 2:427343/1‑251 (MQ=255) ccgttgtagggaaaaGACCCGGCAAAAGAAGTGCAGAAAATATTTGTTATTGCGTTCCCGGTCATTCACAAGACGGGCGCAATACAGGTTGTTCAT‑GTCTGGTGTTAGTGCCA‑CTGTTCCTTTGG‑GAAGGCATCCGTAAAACGGGATGGGAGTAGGAGCGAAACAAAAAAAAAAAAGCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTTCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTg < 1:163014/240‑1 (MQ=255) aaGAACCGGCCAAAGAATTGCAGTAAATATGTTTTATTGCGTTACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGAGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAACCAATTAAGTGCTAAACGCAGCTACGCCAGCCTGAGTTTGCGTGAGGTGGCGCGTg > 2:257392/1‑250 (MQ=255) gAACAGGCCAAAGAATTGCAGTAAATATGTTTTATTGCGTTAACGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGAGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGcgcggga > 2:354429/1‑246 (MQ=255) aaGAATTGCAGTAAATATGTTTTATTGCGTTACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGc > 1:386067/1‑251 (MQ=255) aGAATTGCAGTAAATATGTTTTATTGCGTTACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCt > 1:308697/1‑251 (MQ=255) aaTTGCAGTAAATATGTTTTATTGCGTTACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAg > 2:221102/1‑142 (MQ=255) aaTTGCAGTAAATATGTTTTATTGCGTTACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAg < 1:221102/142‑1 (MQ=255) aaTTGCAGTAAATATGTTTTATTGCGTTACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTcc > 1:88992/1‑251 (MQ=255) gTAAATATGTTTTATTGCGTTACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGCAGTACTTTTGG‑CACGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGACGCATTTAGCCAATTAAGTGATATACGCAGCTTCGCCAGCCTGAGTTTGCGGGAAGGGGCGCGTGACACGGGCCTTGCTCCCACctct > 2:348893/1‑251 (MQ=255) gTAAATATGTTCTATTGCGTTACCGTTAATTCACAATCCTGGCGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTCATGAGCGTAAGAGCGACACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGATTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGCGAAGAGGGCATTGCTCCCACctct > 2:446091/1‑251 (MQ=255) aaaTATGTTTTATTGCGTTACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCg > 1:341227/1‑150 (MQ=255) gTTTTATTGCGTTCCCTTTCATTCAAAATCTTGGAACAATCCGTTATGTTCATGCTCTGGT‑ATAGGGCCAGCAGTATTTTGGG‑AAAGA‑ATTCAGACTCCGTGATGGGCATAAGAGCGCAAAAAAAAAAAAAACCCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATc < 2:358158/250‑1 (MQ=255) gTTTTATTGCGTTACCTTTTTTTCAAAATATTGGACCCCTCCAGTATGTTCTTTCTCGGTT‑ATCGGCCCGGCAGT‑CTTTTGGGCAAGG‑ATTCAGACATCGTGCCGGGCGAAAGAGCGAAAAAAAAAAAAAAAACCC‑GCCGTTCGCTGGTGGAAGCTGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATc < 1:352982/250‑1 (MQ=255) aTTGCGTTACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCNGGCATTGCTCCCACCTCTTTTTATCGGCAtt > 2:239291/1‑251 (MQ=255) ggttaacgtttatttcaCAATACTGGACCAAACCAGTCTTTTCATTCTGTGGT‑ATAGTGCAAGCTGTGTTTTTGG‑AAAGG‑CTACAGCCGTCGTGGGGGGCGAAAGAGCGCACCAAAAAAAAAAACCCC‑GCCGTGCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCAttacc < 2:128345/238‑4 (MQ=255) cGTTACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTccc > 1:98263/1‑250 (MQ=255) ttttcgtttcattcaCAATACGGGACCATACAAGTATTGCCATTCTGTGTT‑ATATTGCCAGCATTATTTTGGG‑CAAGG‑ATCCAGAAATCGGGGGGGGGGAAAGAGC‑CAAAAAAAAAAAAAAACCCCGCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTcc < 2:98263/242‑1 (MQ=255) ttACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTAAGCAAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCTTTTCTCCCACCTCTTTTTCTCGGCATTTcctcg > 2:125788/1‑248 (MQ=255) tACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCcgcg > 1:244247/1‑250 (MQ=255) ccgggAGCAACCCAGTATGTTCTTTCTCTGGT‑ATGGGGCCAGCATTACTTTGGG‑CAAGG‑ATTCAGACATCGGGAGGGGGGTAAGAGCGCAAAAAAAAAAAAAACCCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGt < 1:101086/247‑1 (MQ=255) gggAGCAATCCATTAGGTTCATTCTCGGGT‑ATGGTGCCAGCAGTATTTTGGG‑CAAGG‑ATTCAAACATGGTGAGGGGCGAAAGAGCCAAAAAAAAAGAAAAACCCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTg < 2:344396/250‑1 (MQ=255) agaaaTCCAGTTTGTTAATTCTCTGTT‑ATAGTGCCAGCATTACTTTTGG‑AAGGG‑ATTCAGACATCGTGAGGGGGGAAAGAGCGCAAAAAAAAAAAAAACCCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGAcc < 1:239291/248‑1 (MQ=255) aTGTTCATACTCTGGT‑ATAGTGCCAGCAGTACTTTTAG‑CCAGG‑ATTCAGACATCGTGATCGGCGTAAGAGCGCAACACAAAGACAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTACTGAACGCAGCTAAGCCAGCCTGAGTTCGCGTGCAGTGGCGCGTGCAACGAGCATAGTTCCCACCTCTTTTTTTCGGCATTACCGCGAGGACGACGAACTgggcattcacttcgttgctg > 2:56461/1‑233 (MQ=255) cATTCTCTGGT‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGACGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTCGCGGCATTTCCGCGACGTAGACGAACTTGGGCGGACCATGGTTGAGGGGAGCg > 2:363516/1‑251 (MQ=255) gT‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGCGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGAGACGTAGACGAACTGGGTCTGACCATGGCAGTTGAGAGCGGTTTAATGc > 2:445747/1‑251 (MQ=255) agcagTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGAGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGACGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATAGGCATTTCCGCGACGTAGCCGAAATGGGTCTGCCCATGGTTGATGAGAGCGGTTTACAGATACGCCAAc > 2:257008/1‑250 (MQ=255) gTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTtg > 1:361093/1‑219 (MQ=255) ttttGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCATCAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGcc > 1:65385/1‑251 (MQ=255) gg‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGgc > 1:136505/1‑251 (MQ=255) gACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGGGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTAt > 2:342136/1‑251 (MQ=255) cctggATGGGCGTAAGAGCGAAAAAAAAAAAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTATATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGcc < 1:292844/247‑1 (MQ=255) cGTGATCGGCGTAAGAGCGCAACCAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTACGTGCTGAACGCAGCTTCGCCAGCCTGTGTTTGCGTGAAGTGGAGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGCCATTTCCGCGACGTAGACGAACTGGGACTGACCATGGTTGCTGAGGGCGGGTTAATGCTAAGCCAACTCATGCACCAGGCGCGTCAGCGTATCGcc > 2:480000/1‑250 (MQ=255) gtgggggcgaagggggacacaaAAAAAAAAAACCCCGCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCaaa < 1:267212/233‑1 (MQ=255) tGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGc > 1:238065/1‑251 (MQ=255) gagTAAGCGCGCAACAAAAAAAAAAATCCC‑TCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCTGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCggg < 1:20264/249‑1 (MQ=255) taagagcaaaaaaaaaaaaaaaaaCCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGa < 1:354771/237‑1 (MQ=255) tAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCgggga > 2:354771/1‑248 (MQ=255) aaGAGCGCAACAAACAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGCGAGCGGTTTAATGCTACGCCAACTCATGCGCCCGGCGCGTCAGCGTATCGCCAAAGGCGGGAgtg > 2:58734/1‑251 (MQ=255) aacaaAAAGAAAAAACCC‑GCCGTTCGCTGGAGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGc > 1:387575/1‑251 (MQ=255) acaaAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCCCCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGGCAGCGCATCGCCAAAGGCGGGAgagggagccgcc > 2:116493/1‑240 (MQ=255) aaaGAAAAAACCC‑GCCGTTCGCTGGAGGAAGCCGCATTTAACCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTc > 1:145703/1‑251 (MQ=255) | CCCTGACGTTTTATTGGATTTTTATCGACGATACTCTCCGTTTAAGCGGCAGGTTTCCGCTGTACGTAAAAGAACCGGCCAAAGAATTGCAGTAAATATGTTTTATTGCGTTACCGTTCATTCACAATACTGGAGCAATCCAGTATGTTCATTCTCTGGT‑ATAGTGCCAGCAGTACTTTTGG‑CAAGG‑ATTCAGACATCGTGATGGGCGTAAGAGCGCAACAAAAAGAAAAAACCC‑GCCGTTCGCTGGTGGAAGCCGCATTTAGCCAATTAAGTGCTGAACGCAGCTTCGCCAGCCTGAGTTTGCGTGAAGTGGCGCGTGAAGCGGGCATTGCTCCCACCTCTTTTTATCGGCATTTCCGCGACGTAGACGAACTGGGTCTGACCATGGTTGATGAGAGCGGTTTAATGCTACGCCAACTCATGCGCCAGGCGCGTCAGCGTATCGCCAAAGGCGGGAGTGTGATCCGCACCTC > NC_000913/4160923‑4161395 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |