| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,401,459 | 0 | T | C | 25.5% | 107.1 / 10.9 | 51 | D625G (GAT→GGT) | csrD | regulator of CsrB and CsrC decay |
| Reads supporting (aligned to +/- strand): ref base T (34/4); new base C (0/13); total (34/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.00e-09 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTTACAAATCTCTGCCTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAAC‑GGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTACCAGCGTCAAACCAGCCTGGTTGACGGCT > NC_000913/3401213‑3401704 | gTTACAAATCTCTGCCTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAAC‑GGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATcccc > 1:33905/1‑251 (MQ=255) tACAAATCTCTGCCTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAAC‑GGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGCGGACGCGAAAAAATCCCC‑tt > 2:351935/1‑251 (MQ=255) aCAAATCTCTGCCTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAAC‑GGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGAGAGGACGCGAAAAAATCCCC‑TTg > 2:30782/1‑251 (MQ=255) ctGCCTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAAC‑GGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTg > 1:142738/1‑251 (MQ=255) gCCTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAAC‑GGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGt > 2:126396/1‑250 (MQ=255) ccATCAGCAGCTCTCCTCGCCTGTTGCCACCCGCTTAAGGTCATTAATTTGCATATGTGCTGCAACATTCGGGCGAGCAGACAACCACACCCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAAC‑GGATTAAACGGCAGGTTAAACCGAGTTGTTTTTTGATTATTTTTTCCCGTT‑ATTATCAAGTGGCTGTGAGGCCGAAAAAAAACCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCt < 1:420448/249‑1 (MQ=255) ccTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAAC‑GGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTcgcg > 1:40615/1‑251 (MQ=255) tattcgcgaCCGCGAAAGGTCATTCTTCTGCATATGTGCTCCAACAATCGGGCGAGCAGACAAGCACACTCCCATGAAACGCAGCGCCCATTATTCTACGTAAAAAC‑GGATTAAACGGCAGTTTAAACCGTGTATCTTTGTGAATTTTTTTCCACGTT‑AGTATCAAGTGGTTGTGAGGCCGCGAAAAAACCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAacgca < 1:418884/242‑1 (MQ=255) ttGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAAC‑GGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGCATCAGGGTCTGCCACTCGCTTCGCGAACGCACGcc > 2:146930/1‑251 (MQ=255) aaaCCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAAC‑GGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑TGTATCAAGTTGCTGTTAGGACGCGAAAAACTCCCC‑TTGCCCGCCTGTAACACCGCGCTGGATCAGCGTCTGCCCCTCGCTTCGCGaaagccccccggg > 2:40192/2‑240 (MQ=255) ccggttatgttcattcatCTGCATTTGGGCTGCAACAATCGGGCGAGCAGACAAGCGCACTCCCATGAGGCCAAGCGCGTATTATTCTACTTAAAAAG‑GTATAAAACGGAGGGTTAACCCAATTTTCTTGGTGAATTTTTTTTCACGTA‑ATTATCAAGTGGCTTTGAGGACGCGAAAAATTCCCG‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGc < 1:440552/241‑1 (MQ=255) aGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAAC‑GGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGACTCCGGGTCTGCCACTCGCCTCGCGAACGCACGCCGGTGGCGTAAAcc > 2:473293/1‑251 (MQ=255) attcatCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAAC‑GGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTgggg > 2:93844/1‑250 (MQ=255) gCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAAC‑GGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTcc > 1:301819/1‑251 (MQ=255) cATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAAC‑GGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGcatgtccc > 1:388489/1‑244 (MQ=255) aaTCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAAC‑GGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTc > 1:104126/1‑196 (MQ=255) tGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAAC‑GGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAgg > 1:285363/1‑251 (MQ=255) ggCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAAC‑GGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGCATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCGCGGAGCAGGCTTCCACCAGGc > 1:78493/1‑251 (MQ=255) ggCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAAC‑GGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGGGCTGGTCCCGGAGCAGGCTTCCACCAGGc > 1:392151/1‑251 (MQ=255) gagcagaaaaccccccccccATGAGAGGCAGGGCGCTTTATTCTCCGTAAAAAC‑GGATAAACCGGCAGTTAAAACCGGTTTTCTTTGGGAATTTTTTTCCCCGTT‑AGTATCAAGTGGCTTTGAGGACGCAAAAAAACCCCC‑TTCCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCttt < 1:235141/234‑1 (MQ=255) gaaaaaaaaggCACACCCCCAGGAGACGCACCGCGCATTATTCTTCTTGAAAAG‑GAATTAAAGGGCAGTTTAACCCGATTATCTTTGTAAATATTTTTGCACGTT‑AGTACCAGGTGGTGGGGAGGACG‑AAAAAAATCCCCCGTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCttt < 2:434898/241‑1 (MQ=255) ccacccccATGGGCCGCAGCGCGCATTATCCTACG‑GAAAACCGGATAAAACGGCGGGTTAACCCGAGTATCTTTGTAAATTTTTTTCCACGTT‑AGTATCAAGTGGTTGTGAGGACGCAAAAAAACCCCC‑TTCCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCt < 1:146930/246‑1 (MQ=255) aGCGCGCATTATTCTCCGTGAAAAC‑GGGTTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGAGAGGACGCGAAAAAATCCAC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGACCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTtc > 2:443590/1‑251 (MQ=255) aGCGCGCAGTATTATACGTGAAAAC‑GGATTAAACGGCAGGTTAAACCGAGAATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGACACAGGGCCTGCCAATCGCTTCGCGAACGCACGCCGGAGGCGTAAACCTGGGAGCTGGTCCCGGAGCAGTCTTCCACCAGGTTTTGAACAAGCAGCTAGATCTCCCATCGCTtc > 2:328350/1‑251 (MQ=255) cGTGAAACC‑GGTTAAAACGGCAGGTTAACCCGATTATCTTTGTAAATATTTTTTCCCGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAACTCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCa < 1:100873/251‑1 (MQ=255) aaaC‑GGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAacgcac > 1:292003/1‑148 (MQ=255) acgaaTTAACCGGCAGGTAAAACCGAGTATTTTTGTGAATTTTTTTCCACGTT‑AGTATAAAGTGGCTGTGAGGACGCGAAAAAACCCCC‑TGGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCgg < 1:126396/247‑1 (MQ=255) aaaCGGCAGGTTAAACCTAGTATCTTTGTGAATATTTTTTCACGTT‑CGTGTCAAGTGGCTGTGAGTCCGCGAACAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGACACTCGCTTCTCTAACGCACGCCGGTAGCGTACACCTGGGTGCTGGTCCCTGAGCAGGCTTCCACCAAGCTTTGAACCATCAGCTGGTTATACGTTCGCTTCTCAATTTTTCTTACCAGCCCCggttgtagc > 2:171757/1‑244 (MQ=255) aaaCGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGc > 2:32969/1‑251 (MQ=255) acggcagttaaacccggttatttttGTAAATATTTTTCCACGTT‑TGTAACAAGTGGTGGGGAGGACGAAAAAAAACCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCtt < 1:107446/229‑1 (MQ=255) ggaaggtaaatccGAGTATCTTTGTAAATATTTTTTCACTTT‑ATTATCAGGGGGTTGGGAGAACGCGAAAAAACCCCC‑TGCCCCCCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGa < 2:142908/240‑1 (MQ=255) aGGTTAGACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGt > 1:477845/1‑250 (MQ=255) ccGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCACTGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAAc > 1:387879/1‑250 (MQ=255) ccGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAAc > 1:435623/1‑250 (MQ=255) gagttttgttGTTAATTTTTTTTCAGGTT‑ATTTGCAAGTGGTTGTGAGGGCGC‑AAAAAATCCCCCTGGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACAtt < 1:443590/243‑1 (MQ=255) ggtatttttgtaaagttttttCCCGTTGATTATAAAGTGGTTGTGAGGACGAAAAAAAACCCCC‑TTCCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACAt < 2:22728/234‑1 (MQ=255) ttGTAAATTTTTTTCCACGTT‑AGTAGCAAGTGGCTGTGAGGACGCAAAAAAACCCCC‑TGGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCt < 1:32969/250‑1 (MQ=255) tgtgAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCttt > 1:110864/1‑251 (MQ=255) tatTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATcc > 2:276406/1‑250 (MQ=255) ttttCCCGTT‑ATTATCAAGTGGCGGTGAGGCCGCGAAAAAACCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACt < 1:140047/250‑1 (MQ=255) ttttCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGACCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTg > 1:273548/1‑251 (MQ=255) tttCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGATCTTTGATCCAACTgg > 2:121264/1‑251 (MQ=255) aCGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGAGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAATTTCTTTGATCCAACTGGTACt > 2:374513/1‑251 (MQ=255) att‑AGTATCAAGAGGATGTGAGGAAGCGAACAAATCCAC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCAATCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGAGTGCTGGTCCCGGAGCAGGCCTCCACCCGGCTTTGAACCAACAGCTGGTTCTCGGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGAACCTCAAAATTACGTTCTTTGATCCACCTGGTACtt > 2:367493/2‑250 (MQ=255) gtataagggggcggtgAGGACGCAAAAAAACCCCC‑TTTCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTACCAg < 1:59813/238‑1 (MQ=255) aGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTACCAGCGTCa > 1:207534/1‑250 (MQ=255) gagcaCGCAAAAAAACCCCC‑TGCCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACACGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGGACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTACCAGCGTCAAACCAGCCTg < 2:438926/247‑1 (MQ=255) gACGCGAAAAAATCCCC‑TTGCACGACTGTAACACCGCGCTGAATCAGGGACTGCCACTCGCTTCGCGAACGCCCGCCGGTGGCGTAAACCTAGGTGCTGGTCCCGGAGCAGACTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAATTTCTTTGATCCAACTGGTCCTTACCAGCGTCAAACCACCCTGGtt > 2:145415/1‑251 (MQ=255) cgcgAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTACCAGCGTCAAACCAGCCTGGTTg > 1:272044/1‑250 (MQ=255) aaaaaTCCCC‑TTGCCCGCCTGTAACACAGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCACCATTAAGTTCTTTGATCCAACTGGTACTTACCAGCGTCAAACCAGCCTGGTTGACGGCt > 2:313014/1‑251 (MQ=255) aaaaaCCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTACCAGCGTCAAACCAGCCTGGTTGACGGCt < 1:351935/251‑1 (MQ=255) | GTTACAAATCTCTGCCTGAGTCCAGAAAGGCTTAATGCATCAGCAGCATTCCTCGCCTGTTTGCAACCGCGTAAGGTCATTCATCTGCATATGTGCTGCAACAATCTGGCGAGCAGACAAGCACACTCCCATGAGACGCAGCGCGCATTATTCTACGTGAAAAC‑GGATTAAACGGCAGGTTAAACCGAGTATCTTTGTGAATATTTTTTCACGTT‑AGTATCAAGTGGCTGTGAGGACGCGAAAAAATCCCC‑TTGCCCGCCTGTAACACCGCGCTGAATCAGGGTCTGCCACTCGCTTCGCGAACGCACGCCGGTGGCGTAAACCTGGGTGCTGGTCCCGGAGCAGGCTTCCACCAGGCTTTGAACCAGCAGCTGGTTCTCCGTTCGCTTCTCAATGTTTCTGACCAGCCCCGGATGGAGCTTGAGTAACTCAACATTAAGTTCTTTGATCCAACTGGTACTTACCAGCGTCAAACCAGCCTGGTTGACGGCT > NC_000913/3401213‑3401704 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |