mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 84,305 | 0 | T | C | 77.1% | 68.0 / 10.1 | 35 | intergenic (‑597/‑63) | leuL/leuO | leu operon leader peptide/DNA‑binding transcriptional dual regulator LeuO |
| * | NC_000913 | 84,306 | 0 | C | G | 76.5% | 66.0 / 16.2 | 35 | intergenic (‑598/‑62) | leuL/leuO | leu operon leader peptide/DNA‑binding transcriptional dual regulator LeuO |
| * | NC_000913 | 1,196,352 | 0 | C | A | 64.7% | ‑2.7 / 13.0 | 17 | D410E (GAC→GAA) | icd | isocitrate dehydrogenase |
| * | NC_000913 | 4,296,268 | 0 | T | C | 36.7% | 10.6 / 25.1 | 31 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,256,069 | 0 | G | C | 30.3% | 57.6 / 10.9 | 33 | P133R (CCG→CGG) | plsB | glycerol‑3‑phosphate 1‑O‑acyltransferase |
| * | NC_000913 | 1,658,163 | 0 | C | T | 29.2% | 68.8 / 18.0 | 48 | S32F (TCT→TTT) | ynfE | putative selenate reductase YnfE |
| * | NC_000913 | 1,658,167 | 0 | G | T | 29.2% | 69.8 / 11.2 | 48 | L33F (TTG→TTT) | ynfE | putative selenate reductase YnfE |
| * | NC_000913 | 4,287,710 | 0 | G | A | 25.0% | 46.2 / 11.2 | 32 | intergenic (+43/‑54) | ytcB/nrfA | protein YtcB/cytochrome c552 nitrite reductase |
| * | NC_000913 | 974,449 | 0 | A | G | 24.0% | 89.6 / 10.3 | 51 | D44G (GAT→GGT) | mukF | chromosome partitioning protein MukF |
| * | NC_000913 | 3,135,775 | 0 | C | T | 23.5% | 92.0 / 11.9 | 51 | K199K (AAG→AAA) | pitB | metal phosphate:H(+) symporter PitB |
| * | NC_000913 | 3,135,781 | 0 | G | T | 23.1% | 87.4 / 11.4 | 52 | R197R (CGC→CGA) | pitB | metal phosphate:H(+) symporter PitB |
| * | NC_000913 | 458,189 | 0 | A | G | 22.6% | 105.3 / 11.3 | 54 | D255G (GAT→GGT) | clpX | ATP‑dependent Clp protease ATP‑binding subunit ClpX |
| * | NC_000913 | 4,171,626 | 0 | A | G | 21.9% | 111.3 / 32.2 | 65 | intergenic (+82/‑11) | rrlB/rrfB | 23S ribosomal RNA/5S ribosomal RNA |
| * | NC_000913 | 4,171,781 | 0 | A | G | 20.6% | 54.3 / 12.6 | 34 | intergenic (+25/‑276) | rrfB/murB | 5S ribosomal RNA/UDP‑N‑acetylenolpyruvoylglucosamine reductase |
| * | NC_000913 | 4,171,648 | 0 | A | C | 20.3% | 121.1 / 28.0 | 69 | noncoding (12/120 nt) | rrfB | 5S ribosomal RNA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2174362 | 37 (0.570) | 4 (0.060) | 4/480 | 5.1 | 9.8% | coding (205/285 nt) | gatB | galactitol‑specific PTS enzyme IIB component |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 4216100 | 52 (0.790) | 3 (0.050) | 3/464 | 5.4 | 4.5% | coding (623/1602 nt) | aceB | malate synthase A |
| ? | NC_000913 | 4216861 = | 77 (1.220) | coding (1384/1602 nt) | aceB | malate synthase A | |||||
| * | ? | NC_000913 | = 1826504 | 56 (0.860) | 3 (0.050) | 3/464 | 5.4 | 4.0% | coding (420/969 nt) | astE | succinylglutamate desuccinylase |
| ? | NC_000913 | 1826847 = | 91 (1.440) | coding (77/969 nt) | astE | succinylglutamate desuccinylase | |||||
| * | ? | NC_000913 | 1288297 = | 62 (0.950) | 3 (0.050) | 3/468 | 5.4 | 5.2% | coding (328/843 nt) | purU | formyltetrahydrofolate deformylase |
| ? | NC_000913 | 4175492 = | 49 (0.770) | noncoding (21/85 nt) | tyrU | tRNA‑Tyr | |||||
| * | ? | NC_000913 | = 1135040 | 70 (1.070) | 3 (0.050) | 3/464 | 5.4 | 3.7% | coding (312/783 nt) | flgG | flagellar basal‑body rod protein FlgG |
| ? | NC_000913 | 1135723 = | 87 (1.370) | coding (160/699 nt) | flgH | flagellar L‑ring protein | |||||
| * | ? | NC_000913 | = 291401 | NA (NA) | 3 (0.050) | 3/474 | 5.5 | 37.7% | noncoding (1/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 4542049 | 5 (0.080) | coding (13/597 nt) | fimE | regulator for fimA | |||||