New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 217436237 (0.570)4 (0.060) 4/480 5.1 9.8% coding (205/285 nt) gatB galactitol‑specific PTS enzyme IIB component
?NC_000913 = 2290113 NA (NA)noncoding (1/1195 nt) IS5 repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGGTCGCAACCGCGCCTCCGCAAGCGACAATAATCTTGCGTTTCATAAATAGTCCTTTTTATTGTTACAGAGGGATTTATTCGTCTGAAT  >  NC_000913/2174119‑2174610
                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                        
tCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTCAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAACCATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAat                                                                                                                                                                                                                                                    >  2:100180/1‑250 (MQ=255)
 cacaAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGCGAATATAACGCATGACTTCTGAAAACATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGActat                                                                                                                                                                                                                                                  >  1:307531/1‑251 (MQ=255)
       gCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTGCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGACCGAGGGCGTGAATATAACGCATGACGTCTAAAAACATAGGTTACCCCTGTAAGATAGTCAGAATGTTATTTTGTAATGCTTCGCTACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCaa                                                                                                                                                                                                                                            <  1:465221/251‑1 (MQ=255)
              ccAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACg                                                                                                                                                                                                                                     <  1:257974/251‑1 (MQ=255)
                 acaaAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCACCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATc                                                                                                                                                                                                                                  >  1:200518/1‑251 (MQ=255)
                              cGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAgtg                                                                                                                                                                                                                     >  1:42538/1‑251 (MQ=255)
                                atatGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAgtggt                                                                                                                                                                                                                   <  1:214755/251‑1 (MQ=255)
                                               ttAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGcac                                                                                                                                                                                                    >  1:316042/1‑251 (MQ=255)
                                                               cctTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGGGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGtt                                                                                                                                                                                    <  1:38557/251‑1 (MQ=255)
                                                                     tGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTAtt                                                                                                                                                                              >  1:139216/1‑251 (MQ=255)
                                                                      gCCTAATATTGTAGAAAAAATAATGATGACAATCGGCATAATCACCGTAGGGCCGAGGTCTAGAATATATCGCATGACTTCTGAAAACATAGGGCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAAAAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTAtt                                                                                                                                                                              <  2:376114/250‑1 (MQ=255)
                                                                       ccTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGAATGCCGTGAACTAACGGAATATCGACAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTc                                                                                                                                                                            >  2:153153/1‑251 (MQ=255)
                                                                          aaTAGTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGCATTCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCAt                                                                                                                                                                          <  1:648299/250‑1 (MQ=255)
                                                                           aaatTTTAGAAAAAACAATGATGACAAACGCAAGCATCACCGTAGGGCCGAGGGCGAGATTATAACGCATGCCTTCTGAAACCATAGGTCTCCCCTGTAAGATAGTCACAATTTTACTTCTTAATGTTTCGATACCGATACCAGAAATAAAAGGCTTGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACCTTGGCAGTGGTGCATATCAAATGCACGCCATCCATATAGTTGTCTATTTCATTa                                                                                                                                                                        <  1:132082/249‑1 (MQ=255)
                                                                                     aaaaataataaatgaaatgggCAGCATCACCGTAGGCCCGAGGTCGAGAATATAACGCTTGACTTCTGAAAAAAAGGTGCCCCCCTGTAAGAGAGGAAAAATTTTATTTTGTAATGCTTCGATACGGATACAAGAAATAAAGGGCATGCGGTGAGCTAACGGAATATCGCCAAAATTGCGATCCTGTTTGTGATTGGTGCATGTCAAATGCACACCGGCCATATAGGTTTCTATTTCATTAACCCGACACt                                                                                                                                                              <  2:316042/232‑1 (MQ=255)
                                                                                      aaaaTAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTg                                                                                                                                                             >  1:668681/1‑251 (MQ=255)
                                                                                           aatGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGAtt                                                                                                                                                         >  1:344403/1‑250 (MQ=255)
                                                                                             tgatgaCAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAAt                                                                                                                                                      >  1:649222/1‑251 (MQ=255)
                                                                                                    aaTCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGCTCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCAGACACTGGATTAATTCAAc                                                                                                                                                 >  1:686720/1‑249 (MQ=255)
                                                                                                                   cGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCt                                                                                                                                >  1:531344/1‑251 (MQ=255)
                                                                                                                       gggCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGTCCCCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGGTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGaca                                                                                                                            <  1:677313/251‑1 (MQ=255)
                                                                                                                              ggTCGAGACTATAACGCATGTCTTCTGAAACCATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCaaaa                                                                                                                                                                                                                                          >  2:481045/1‑134 (MQ=255)
                                                                                                                              ggTCGAGAATATAACGCATGACTTCTGAAAACATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCaaaa                                                                                                                                                                                                                                          <  1:481045/134‑1 (MQ=255)
                                                                                                                                    aaaTATAACGCCTGCTTTCTGAAAACATAGGTCACCCCTTTAATATAGTAAGAATTTTTTTTTGTAATGCTCCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATAGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGTTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAAtt                                                                                                               <  2:203794/250‑1 (MQ=255)
                                                                                                                                              aaTGACTTCTGAAAACATAGGTCACTCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCTATACCAGAAATAAAAGGCATGCCTTGAACTAACGGAATATCGCAAAAACTACGATCCACTTTGGCAGTGGTGCATACCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTccgccg                                                                                                     <  2:655620/250‑1 (MQ=255)
                                                                                                                                               aTGACTTCTGAAAACATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAACGGCATGCCGTGAACTAACGGCATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCcgccgc                                                                                                    >  1:440579/1‑251 (MQ=255)
                                                                                                                                                  tatccTGAAAACATAGGTCACCCCTGTAAGATAGACAGCATTTTATTTTGTAATGCTTCGAAACCGATACCATAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCTACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTACTTCAATAGGAATATTATGATTCTGCCACAACTCTTTACTTTCTTCCGCCGCCAt                                                                                                 >  2:93289/5‑251 (MQ=255)
                                                                                                                                                                       ccctggTAAGATAGTCAGAATTTTATTTTTTAATGCCTCTATACCGATCCCAGAAATAAAAGGCATGACGTAAACTACCGGAATATCGCAAAAACTACGATCCACGTTGGCAGTGGTGCATAACAAATGCACACCATCCATATAGGGTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGGTCGCAACCgcgc                                                                             <  2:338743/246‑1 (MQ=255)
                                                                                                                                                                              atataagtcctaaTTTTATTTTGTACATCTTCGATCCCGCTACCCGAAAAAAATGCCATCCCGTAATCTAACTCATTCTCCCCAAACCTCCGACCCCCTTTGACAGTGGTCCATACCAACTCCACTCTCTCCATATTGTTTTCTTTTCCATTCACCCCACACTTTATTTATTCAACAGGAATATTATGATTCTGACACACCTCTTTAATTTCTTCCGCCGCAATCGTCGAGGTCGCTCCCGCGCCTCCgta                                                                      <  2:46041/240‑3 (MQ=255)
                                                                                                                                                                                                             tCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGTTCGCAACCGCGCCTCCGCAAGCGACAATAATCTTGCGTTTCCTAAAt                                          >  2:158959/1‑249 (MQ=255)
                                                                                                                                                                                                              cgataccgatacAAGAAATAAAAGGCATGCCGGGAACTAACGGAATATCGCCAAAACTACGATCCATTTTGGCAGTGGTGCATATCAAATGTACCCCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGGTCGCAACCGCGCCTCCGCAAGCGACAATAATCTTGCGTTTCATAAATAg                                        <  1:478134/250‑1 (MQ=255)
                                                                                                                                                                                                              caataccgtaaccAAAAAAAAAAGGAATGCCGTGAACAAACGAATTATCGCCAAACCTACGATCCACTTTGGAAGTGGTGCATATCAAATGCACACAATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGGTCGCAACCGCGCCTCCGCAAGCGACAATAATCTTGCGTGTCATAAATAg                                        <  2:668681/240‑1 (MQ=255)
                                                                                                                                                                                                                                        aTGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGGTCGCAACCGCGCCTCCGCAAGCGACAATAATCTTGCGTTTCATAAATAGTCCTTTTTATTGTTACAGAGGGAttt              >  1:23705/1‑250 (MQ=255)
                                                                                                                                                                                                                                            cGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGGTCGCAACCGCGCCTCCGCAAGCGCCAATAATCTTGCGTTTCATAAATAGTCCTTTTTATTGTTACAGAGGGATTTATTCg         >  2:627109/1‑251 (MQ=255)
                                                                                                                                                                                                                                              ggAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGGTCGCAACCGCGCCTCCGCAAGCGACAATAATCTTGCGTTTCATAAATAGTCCTTTTTATTGTTACAGAGGGATTTATTCGTc       <  1:627109/250‑1 (MQ=255)
                                                                                                                                                                                                                                                  cTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGGTCGCAACCGCGCCTCCGCAAGCGACAATAATCTTGCGTTTCATAAATAGTCCTTTTTATTGTTACAGAGGGATTTATTCGTCTGa    >  1:109315/1‑250 (MQ=255)
                                                                                                                                                                                                                                                    aaCGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGGTCGCAACCGCGCCTCCGCAAGCGACAATAATCTTGCGTTTCATAAATAGTCCTTTTTATTGTTACAGAGGGATTTATTCGTCTGAAt  <  1:100180/250‑1 (MQ=255)
                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                        
TCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGTCACCCCTGTAAGATAGTCAGAATTTTATTTTGTAATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGGTCGCAACCGCGCCTCCGCAAGCGACAATAATCTTGCGTTTCATAAATAGTCCTTTTTATTGTTACAGAGGGATTTATTCGTCTGAAT  >  NC_000913/2174119‑2174610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.