| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2174362 | 37 (0.570) | 4 (0.060) | 4/480 | 5.1 | 9.8% | coding (205/285 nt) | gatB | galactitol‑specific PTS enzyme IIB component |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGGTCGCAACCGCGCCTCCGCAAGCGACAATAATCTTGCGTTTCATAAATAGTCCTTTTTATTGTTACAGAGGGATTTATTCGTCTGAAT > NC_000913/2174119‑2174610 | tCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTCAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAACCATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAat > 2:100180/1‑250 (MQ=255) cacaAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGCGAATATAACGCATGACTTCTGAAAACATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGActat > 1:307531/1‑251 (MQ=255) gCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTGCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGACCGAGGGCGTGAATATAACGCATGACGTCTAAAAACATAGGT‑TACCCCTGTAAGATAGTCAGAATGTTATTTTGTA‑ATGCTTCGCTACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCaa < 1:465221/251‑1 (MQ=255) ccAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACg < 1:257974/251‑1 (MQ=255) acaaAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCACCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATc > 1:200518/1‑251 (MQ=255) cGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAgtg > 1:42538/1‑251 (MQ=255) atatGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAgtggt < 1:214755/251‑1 (MQ=255) ttAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGcac > 1:316042/1‑251 (MQ=255) cctTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGGGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGtt < 1:38557/251‑1 (MQ=255) tGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTAtt > 1:139216/1‑251 (MQ=255) gCCTAATATTGTAGAAAAAATAATGATGACAATCGGCATAATCACCGTAGGGCCGAGGTCTAGAATATATCGCATGACTTCTGAAAACATAGGG‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAAAAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTAtt < 2:376114/250‑1 (MQ=255) ccTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGAATGCCGTGAACTAACGGAATATCGACAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTc > 2:153153/1‑251 (MQ=255) aaTAGTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGCATTCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCAt < 1:648299/250‑1 (MQ=255) aaatTTTAGAAAAAACAATGATGACAAACGCAAGCATCACCGTAGGGCCGAGGGCGAGATTATAACGCATGCCTTCTGAAACCATAGGT‑CTCCCCTGTAAGATAGTCACAATTTTACTTCTTA‑ATGTTTCGATACCGATACCAGAAATAAAAGGCTTGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACCTTGGCAGTGGTGCATATCAAATGCACGCCATCCATATAGTTGTCTATTTCATTa < 1:132082/249‑1 (MQ=255) aaaaataataaatgaaatgggCAGCATCACCGTAGGCCCGAGGTCGAGAATATAACGCTTGACTTCTGAAAA‑AAAGGTGCCCCCCTGTAAGAGAGGAAAAATTTTATTTTGTA‑ATGCTTCGATACGGATACAAGAAATAAAGGGCATGCGGTGAGCTAACGGAATATCGCCAAAATTGCGATCCTGTTTGTGATTGGTGCATGTCAAATGCACACCGGCCATATAGGTTTCTATTTCATTAACCCGACACt < 2:316042/232‑1 (MQ=255) aaaaTAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTg > 1:668681/1‑251 (MQ=255) aatGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGAtt > 1:344403/1‑250 (MQ=255) tgatgaCAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAAt > 1:649222/1‑251 (MQ=255) aaTCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGCTCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCAGACACTGGATTAATTCAAc > 1:686720/1‑249 (MQ=255) cGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCt > 1:531344/1‑251 (MQ=255) gggCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGT‑CCCCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGGTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGaca < 1:677313/251‑1 (MQ=255) ggTCGAGACTATAACGCATGTCTTCTGAAACCATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCaaaa > 2:481045/1‑134 (MQ=255) ggTCGAGAATATAACGCATGACTTCTGAAAACATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCaaaa < 1:481045/134‑1 (MQ=255) aaaTATAACGCCTGCTTTCTGAAAACATAGGT‑CACCCCTTTAATATAGTAAGAATTTTTTTTTGTA‑ATGCTCCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATAGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGTTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAAtt < 2:203794/250‑1 (MQ=255) aaTGACTTCTGAAAACATAGGT‑CACTCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCTATACCAGAAATAAAAGGCATGCCTTGAACTAACGGAATATCGCAAAAACTACGATCCACTTTGGCAGTGGTGCATACCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTccgccg < 2:655620/250‑1 (MQ=255) aTGACTTCTGAAAACATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAACGGCATGCCGTGAACTAACGGCATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCcgccgc > 1:440579/1‑251 (MQ=255) tatccTGAAAACATAGGT‑CACCCCTGTAAGATAGACAGCATTTTATTTTGTA‑ATGCTTCGAAACCGATACCATAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCTACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTACTTCAATAGGAATATTATGATTCTGCCACAACTCTTTACTTTCTTCCGCCGCCAt > 2:93289/5‑251 (MQ=255) ccctggTAAGATAGTCAGAATTTTATTTTTTA‑ATGCCTCTATACCGATCCCAGAAATAAAAGGCATGACGTAAACTACCGGAATATCGCAAAAACTACGATCCACGTTGGCAGTGGTGCATAACAAATGCACACCATCCATATAGGGTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGGTCGCAACCgcgc < 2:338743/246‑1 (MQ=255) atataagtcctaaTTTTATTTTGTACAT‑CTTCGATCCCGCTACCCGAAAAAAATGCCATCCCGTAATCTAACTCATTCTCCCCAAACCTCCGACCCCCTTTGACAGTGGTCCATACCAACTCCACTCTCTCCATATTGTTTTCTTTTCCATTCACCCCACACTTTATTTATTCAACAGGAATATTATGATTCTGACACACCTCTTTAATTTCTTCCGCCGCAATCGTCGAGGTCGCTCCCGCGCCTCCgta < 2:46041/240‑3 (MQ=255) tCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGTTCGCAACCGCGCCTCCGCAAGCGACAATAATCTTGCGTTTCCTAAAt > 2:158959/1‑249 (MQ=255) cgataccgatacAAGAAATAAAAGGCATGCCGGGAACTAACGGAATATCGCCAAAACTACGATCCATTTTGGCAGTGGTGCATATCAAATGTACCCCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGGTCGCAACCGCGCCTCCGCAAGCGACAATAATCTTGCGTTTCATAAATAg < 1:478134/250‑1 (MQ=255) caataccgtaaccAAAAAAAAAAGGAATGCCGTGAACAAACGAATTATCGCCAAACCTACGATCCACTTTGGAAGTGGTGCATATCAAATGCACACAATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGGTCGCAACCGCGCCTCCGCAAGCGACAATAATCTTGCGTGTCATAAATAg < 2:668681/240‑1 (MQ=255) aTGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGGTCGCAACCGCGCCTCCGCAAGCGACAATAATCTTGCGTTTCATAAATAGTCCTTTTTATTGTTACAGAGGGAttt > 1:23705/1‑250 (MQ=255) cGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGGTCGCAACCGCGCCTCCGCAAGCGCCAATAATCTTGCGTTTCATAAATAGTCCTTTTTATTGTTACAGAGGGATTTATTCg > 2:627109/1‑251 (MQ=255) ggAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGGTCGCAACCGCGCCTCCGCAAGCGACAATAATCTTGCGTTTCATAAATAGTCCTTTTTATTGTTACAGAGGGATTTATTCGTc < 1:627109/250‑1 (MQ=255) cTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGGTCGCAACCGCGCCTCCGCAAGCGACAATAATCTTGCGTTTCATAAATAGTCCTTTTTATTGTTACAGAGGGATTTATTCGTCTGa > 1:109315/1‑250 (MQ=255) aaCGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGGTCGCAACCGCGCCTCCGCAAGCGACAATAATCTTGCGTTTCATAAATAGTCCTTTTTATTGTTACAGAGGGATTTATTCGTCTGAAt < 1:100180/250‑1 (MQ=255) | TCACAAGGCCAATGCCAACAAAGCCAATCCCGATATGCAGACCCGCTTTAAAGCAATCGCCTGCCTTCATGCCTAATATTTTAGAAAAAATAATGATGACAATCGGCAGCATCACCGTAGGGCCGAGGTCGAGAATATAACGCATGACTTCTGAAAACATAGGT‑CACCCCTGTAAGATAGTCAGAATTTTATTTTGTA‑ATGCTTCGATACCGATACCAGAAATAAAAGGCATGCCGTGAACTAACGGAATATCGCCAAAACTACGATCCACTTTGGCAGTGGTGCATATCAAATGCACACCATCCATATAGGTTTCTATTTCATTAACCCGACACTGGATTAATTCAACAGGAATATTATGATTCTGACACAACTCTTTAATTTCTTCCGCCGCCATCGTAGAGGTCGCAACCGCGCCTCCGCAAGCGACAATAATCTTGCGTTTCATAAATAGTCCTTTTTATTGTTACAGAGGGATTTATTCGTCTGAAT > NC_000913/2174119‑2174610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |