mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 40,387 | C→T | intergenic (‑1/+30) | caiA ← / ← caiT | crotonobetainyl‑CoA reductase/L‑carnitine:gamma‑butyrobetaine antiporter |
| RA | 43,636 | G→A | G150D (GGC→GAC) | fixB → | putative electron transfer flavoprotein FixB |
| RA | 109,960 | G→A | R561H (CGT→CAT) | secA → | protein translocation ATPase |
| JC JC | 169,339 | IS2 (+) +5 bp | coding (1856‑1860/2244 nt) | fhuA → | ferrichrome outer membrane transporter/phage receptor |
| RA | 246,747 | G→T | S12S (TCG→TCT) | yafL → | NlpC/P60 family protein YafL |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 284,535 | T→G | A445A (GCT→GCG) | yagF → | D‑xylonate dehydratase |
| RA | 313,543 | G→A | intergenic (‑301/‑1748) | ykgR ← / → insE1 | putative membrane protein YkgR/IS3 element protein InsE |
| RA | 339,935 | C→T | A56V (GCC→GTC) | yahH → | putative uncharacterized protein YahH |
| RA | 339,941 | C→T | T58I (ACT→ATT) | yahH → | putative uncharacterized protein YahH |
| RA | 339,958 | G→A | D64N (GAC→AAC) | yahH → | putative uncharacterized protein YahH |
| RA | 480,295 | 2 bp→AA | coding (13‑14/219 nt) | hha ← | hemolysin expression‑modulating protein Hha |
| MC JC | 682,992 | Δ4,859 bp | IS5‑mediated | [hscC]–gltI | [hscC], rihA, gltL, gltK, gltJ, sroC, gltI |
| RA | 690,948 | G→A | V279V (GTC→GTT) | ybeX ← | CorC‑HlyC family protein YbeX |
| RA | 700,038 | G→A | H97Y (CAT→TAT) | umpH ← | UMP phosphatase |
| JC JC | 789,812 | IS2 (–) +5 bp | coding (164‑168/1149 nt) | galK ← | galactokinase |
| RA | 791,688 | G→A | S123F (TCC→TTC) | galE ← | UDP‑glucose 4‑epimerase |
| RA | 809,217 | 2 bp→AG | coding (40‑41/1290 nt) | bioA ← | adenosylmethionine‑8‑amino‑7‑oxononanoate aminotransferase |
| RA | 968,837 | G→A | D158N (GAT→AAT) | lpxK → | tetraacyldisaccharide 4'‑kinase |
| RA | 1,040,126 | G→T | L277L (CTG→CTT) | appB → | cytochrome bd‑II subunit 2 |
| RA | 1,061,935 | G→A | S46N (AGC→AAC) | torD → | trimethylamine‑N‑oxide reductase‑specific chaperone |
| RA | 1,100,070 | G→A | C144Y (TGT→TAT) | ycdY → | chaperone protein YcdY |
| RA | 1,111,727 | 2 bp→TT | coding (865‑866/2544 nt) | opgH → | osmoregulated periplasmic glucans biosynthesis protein H |
| RA | 1,123,556 | C→T | E167K (GAA→AAA) | grxB ← | reduced glutaredoxin 2 |
| RA | 1,169,836 | A→G | L180P (CTG→CCG) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | 1,189,980 | A→G | T156T (ACT→ACC) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,196,220 | C→T | H366H (CAC→CAT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,232 | C→T | T370T (ACC→ACT) | icd → | isocitrate dehydrogenase |
| RA | 1,196,245 | T→C | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| RA | 1,196,247 | A→G | L375M (TTA→CTG) | icd → | isocitrate dehydrogenase |
| MC JC | 1,299,499 | Δ1,199 bp | insH21 | insH21 | |
| RA | 1,301,992 | A→T | N271Y (AAT→TAT) | oppA → | oligopeptide ABC transporter periplasmic binding protein |
| RA | 1,306,736 | T→G | S325A (TCC→GCC) | oppF → | murein tripeptide ABC transporter/oligopeptide ABC transporter ATP binding subunit OppF |
| RA | 1,310,770 | A→G | H32H (CAT→CAC) | yciI ← | protein YciI |
| RA | 1,331,947 | C→T | G300G (GGC→GGT) | topA → | DNA topoisomerase 1 |
| RA | 1,337,394 | A→G | S522G (AGC→GGC) | acnA → | aconitate hydratase 1 |
| RA | 1,357,202 | C→T | intergenic (‑92/+221) | sapA ← / ← ymjA | putative periplasmic binding protein SapA/DUF2543 domain‑containing protein YmjA |
| RA | 1,358,859 | T→C | Y110C (TAT→TGT) | puuP ← | putrescine:H(+) symporter PuuP |
| RA | 1,412,897 | G→A | L113L (CTC→CTT) | intR ← | putative integrase |
| RA | 1,428,087 | C→T | E214K (GAG→AAG) | insH5 ← | IS5 family transposase and trans‑activator |
| RA | 1,610,076 | T→G | D202A (GAT→GCT) | uxaB ← | tagaturonate reductase |
| RA | 1,610,440 | C→T | E81K (GAA→AAA) | uxaB ← | tagaturonate reductase |
| RA | 1,643,679 | A→T | L209Q (CTG→CAG) | ydfU ← | protein YdfU |
| RA | 1,652,331 | T→C | intergenic (+2346/+397) | ydfD → / ← ynfP | lysis protein/protein YnfP |
| RA | 1,671,710 | C→G | intergenic (+26/‑67) | asr → / → ydgU | periplasmic chaperone Asr/uncharacterized protein YdgU |
| RA | 1,721,136 | C→T | L38F (CTT→TTT) | ydhI → | DUF1656 domain‑containing protein YdhI |
| RA | 1,738,377 | C→T | H178H (CAC→CAT) | purR → | DNA‑binding transcriptional repressor PurR |
| RA | 1,776,715 | A→T | S377C (AGT→TGT) | ydiF → | putative acetate‑CoA transferase YdiF |
| RA | 1,856,968 | T→A | I268F (ATT→TTT) | ydjI ← | L‑glycero‑L‑galacto‑octuluronate‑1‑phosphate aldolase |
| RA | 1,894,839 | T→C | L12P (CTC→CCC) | pabB → | aminodeoxychorismate synthase subunit 1 |
| JC JC | 1,907,406 | IS2 (–) +5 bp | coding (26‑30/210 nt) | cspC ← | transcription antiterminator and regulator of mRNA stability CspC |
| RA | 1,975,224 | G→A | A34V (GCG→GTG) | cheA ← | chemotaxis protein CheA |
| RA | 1,987,499 | C→A | intergenic (+71/+8) | ftnB → / ← yecJ | putative ferritin‑like protein/DUF2766 domain‑containing protein YecJ |
| RA | 2,040,433 | C→A | A319D (GCC→GAC) | msrP → | protein‑L‑methionine sulfoxide reductase catalytic subunit MsrP |
| RA | 2,173,363 | Δ2 bp | intergenic (‑490/+918) | gatD ← / ← gatB | galactitol‑1‑phosphate 5‑dehydrogenase/galactitol‑specific PTS enzyme IIB component |
| RA | 2,188,087 | T→C | T110A (ACG→GCG) | yehA ← | putative fimbrial adhesin YehA |
| JC JC | 2,239,800 | IS30 (+) +2 bp | coding (548‑549/999 nt) | mglB ← | D‑galactose/methyl‑galactoside ABC transporter periplasmic binding protein |
| RA | 2,384,808 | C→T | K305K (AAG→AAA) | yfbK ← | IPR002035/DUF3520 domain‑containing protein YfbK |
| RA | 2,410,419 | G→A | L312L (CTG→TTG) | yfbS ← | putative transporter YfbS |
| JC JC | 2,471,079 | +A :: IS3 (+) +5 bp | coding (435‑439/441 nt) | yfdK ← | putative tail fiber assembly protein YfdK |
| RA | 2,484,827 | C→T | L152F (CTT→TTT) | evgS → | sensor histidine kinase EvgS |
| RA | 2,536,059 | C→A | H76N (CAC→AAC) | crr → | Enzyme IIA(Glc) |
| MC JC | 2,558,699 | Δ6,790 bp | intZ–[eutA] | intZ, yffL, yffM, yffN, yffO, yffP, yffQ, yffR, yffS, [eutA] | |
| JC JC | 2,682,766 | IS1 (+) +9 bp | intergenic (‑21/‑89) | yphG ← / → yphH | DUF5107 domain‑containing protein YphG/putative DNA‑binding transcriptional regulator, NAGC‑like |
| JC JC | 2,698,402 | IS30 (+) +2 bp | coding (148‑149/636 nt) | pgpC ← | phosphatidylglycerophosphatase C |
| RA | 2,700,747 | G→A | L84L (CTC→CTT) | acpS ← | holo‑[acyl‑carrier‑protein] synthase |
| RA | 2,748,396 | G→A | A145A (GCG→GCA) | ypjD → | cytochrome c assembly family protein |
| RA | 2,756,976 | G→A | R273Q (CGA→CAA) | intA → | integrase IntA |
| RA | 2,780,060 | G→A | H889H (CAC→CAT) | ypjA ← | adhesin‑like autotransporter YpjA |
| RA | 2,792,209 | G→A | V313M (GTG→ATG) | gabD → | succinate‑semialdehyde dehydrogenase (NADP(+)) GabD |
| RA | 2,800,435 | G→A | G97D (GGT→GAT) | ygaM → | DUF883 domain‑containing protein YgaM |
| RA | 2,810,925 | G→A | G52G (GGG→GGA) | mprA → | DNA‑binding transcriptional regulator MprA |
| RA | 2,817,850 | G→A | noncoding (11/77 nt) | argQ ← | tRNA‑Arg |
| RA | 2,825,328 | G→A | S83S (TCC→TCT) | mltB ← | membrane‑bound lytic murein transglycosylase B |
| RA | 2,841,238 | G→A | M83I (ATG→ATA) | ascB → | 6‑phospho‑beta‑glucosidase AscB |
| RA | 2,863,773 | C→T | L61F (CTT→TTT) | ygbL → | putative 3‑oxo‑tetronate 4‑phosphate decarboxylase YgbL |
| RA | 2,878,077 | C→T | intergenic (+459/+492) | iap → / ← cas2 | alkaline phosphatase isozyme conversion protein/CRISPR‑associated endoribonuclease Cas2 |
| RA | 2,889,365 | C→T | K245K (AAG→AAA) | cysI ← | sulfite reductase, hemoprotein subunit |
| RA | 2,905,825 | C→T | Q39* (CAA→TAA) | ygcG → | TPM domain‑containing protein YgcG |
| JC JC | 2,913,392 | IS2 (–) +5 bp | coding (256‑260/2235 nt) | relA ← | GDP/GTP pyrophosphokinase |
| RA | 2,926,292 | C→T | intergenic (+96/‑16) | queF → / → ppnN | 7‑cyano‑7‑deazaguanine reductase/nucleotide 5'‑monophosphate nucleosidase |
| RA | 3,088,010 | 2 bp→TT | intergenic (+150/‑273) | metK → / → galP | methionine adenosyltransferase/galactose:H(+) symporter |
| RA | 3,336,411 | 2 bp→AT | coding (83‑84/1260 nt) | murA ← | UDP‑N‑acetylglucosamine 1‑carboxyvinyltransferase |
| RA | 3,367,944 | G→A | A40T (GCG→ACG) | yhcG → | DUF1016 domain‑containing protein YhcG |
| RA | 3,388,041 | T→G | T50P (ACG→CCG) | aaeB ← | aromatic carboxylic acid efflux pump subunit AaeB |
| RA | 3,436,697 | G→A | E60E (GAG→GAA) | trkA → | NAD‑binding component of Trk potassium transporters |
| RA | 3,449,779 | G→A | S35S (AGC→AGT) | rpsC ← | 30S ribosomal subunit protein S3 |
| RA | 3,468,768 | C→T | W362* (TGG→TGA) | chiA ← | endochitinase |
| RA | 3,474,425 | T→C | K43R (AAA→AGA) | rpsL ← | 30S ribosomal subunit protein S12 |
| RA | 3,543,877 | G→A | P237P (CCG→CCA) | rpnA → | recombination‑promoting nuclease RpnA |
| RA | 3,560,455 | +G | intergenic (+589/+167) | rtcR → / ← glpG | DNA‑binding transcriptional activator RtcR/rhomboid protease GlpG |
| RA | 3,629,921 | C→T | E228K (GAG→AAG) | yhiI ← | putative membrane fusion protein YhiI |
| RA | 3,682,515 | C→T | M311I (ATG→ATA) | dctA ← | C4 dicarboxylate/orotate:H(+) symporter |
| RA | 3,696,909 | G→A | G151E (GGA→GAA) | bcsE → | c‑di‑GMP‑binding protein BcsE |
| MC JC | 3,708,467 | Δ168 bp | [proK] | [proK] | |
| RA | 3,725,176 | T→G | E48A (GAG→GCG) | glyQ ← | glycine‑‑tRNA ligase subunit alpha |
| RA | 3,761,230 | G→A | S7F (TCC→TTC) | selA ← | selenocysteine synthase |
| RA | 3,771,979 | G→T | intergenic (‑235/‑302) | yibI ← / → mtlA | DUF3302 domain‑containing protein YibI/mannitol‑specific PTS enzyme IICBA component |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| JC | 3,822,651 | (CAGGAT)1→2 | coding (252/2109 nt) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,823,162 | C→T | H255Y (CAC→TAC) | spoT → | bifunctional (p)ppGpp synthase/hydrolase SpoT |
| RA | 3,869,637 | C→A | L87L (CTC→CTA) | cbrA → | colicin M resistance protein |
| RA | 3,878,536 | G→A | Y528Y (TAC→TAT) | gyrB ← | DNA gyrase subunit B |
| RA | 3,883,678 | G→A | P18S (CCA→TCA) | dnaA ← | chromosomal replication initiator protein DnaA |
| RA | 3,912,074 | G→A | S532F (TCC→TTC) | glmS ← | L‑glutamine‑‑D‑fructose‑6‑phosphate aminotransferase |
| RA | 3,931,069 | C→T | E9K (GAA→AAA) | ravA ← | regulatory ATPase RavA |
| RA | 3,955,304 | C→T | R609R (CGC→CGT) | ilvD → | dihydroxy‑acid dehydratase |
| RA | 3,988,115 | C→T | D318N (GAT→AAT) | hemX ← | PF04375 family protein HemX |
| RA | 3,993,531 | T→C | R793R (CGT→CGC) | cyaA → | adenylate cyclase |
| RA | 3,996,049 | T→A | L156* (TTG→TAG) | yigA → | DUF484 domain‑containing protein YigA |
| RA | 4,011,802 | C→T | P243S (CCG→TCG) | bioP → | biotin transporter |
| RA | 4,031,491 | A→T | K111* (AAA→TAA) | pepQ → | Xaa‑Pro dipeptidase |
| RA | 4,084,903 | T→G | N307T (AAC→ACC) | fdoG ← | formate dehydrogenase O subunit alpha |
| RA | 4,092,703 | A→G | F41L (TTC→CTC) | frvA ← | putative PTS enzyme IIA component FrvA |
| RA | 4,107,621 | +G | coding (70/963 nt) | pfkA → | 6‑phosphofructokinase 1 |
| RA | 4,113,851 | G→A | H208Y (CAT→TAT) | fpr ← | flavodoxin/ferredoxin‑NADP(+) reductase |
| RA | 4,143,377 | C→T | S283L (TCA→TTA) | frwC → | putative PTS enzyme IIC component FrwC |
| RA | 4,154,371 | G→A | A159A (GCC→GCT) | argE ← | acetylornithine deacetylase |
| RA | 4,161,248 | G→T | G61V (GGC→GTC) | fabR → | DNA‑binding transcriptional repressor FabR |
| RA | 4,164,123 | C→G | A162G (GCA→GGA) | btuB → | cobalamin outer membrane transporter |
| RA | 4,215,347 | T→A | intergenic (+138/‑131) | metA → / → aceB | homoserine O‑succinyltransferase/malate synthase A |
| RA | 4,223,638 | T→C | intergenic (‑10/‑190) | iclR ← / → metH | DNA‑binding transcriptional repressor IclR/cobalamin‑dependent methionine synthase |
| RA | 4,226,699 | G→A | G958R (GGG→AGG) | metH → | cobalamin‑dependent methionine synthase |
| RA | 4,249,009 | Δ1 bp | coding (1039/1341 nt) | lamB → | maltose outer membrane channel/phage lambda receptor protein |
| RA | 4,282,332 | (A)5→6 | coding (744/1293 nt) | yjcF ← | pentapeptide repeat‑containing protein YjcF |
| RA | 4,293,781 | 2 bp→AT | coding (239‑240/597 nt) | nrfG → | putative formate‑dependent nitrite reductase complex subunit NrfG |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,325,644 | C→T | S33N (AGC→AAC) | yjdN ← | PF06983 family protein YjdN |
| RA | 4,392,997 | G→A | V357V (GTC→GTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,393,552 | G→A | F172F (TTC→TTT) | queG ← | epoxyqueuosine reductase |
| RA | 4,396,373 | C→T | T103T (ACC→ACT) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,396,772 | T→C | F236F (TTT→TTC) | amiB → | N‑acetylmuramoyl‑L‑alanine amidase B |
| RA | 4,425,688 | C→A | H57N (CAC→AAC) | priB → | primosomal replication protein N |
| RA | 4,425,696 | C→A | N59K (AAC→AAA) | priB → | primosomal replication protein N |
| RA | 4,499,661 | T→C | intergenic (+161/‑1599) | insD6 → / → yjgZ | IS2 insertion element protein InsB/uncharacterized protein YjgZ |
| RA | 4,510,238 | T→G | intergenic (+445/+452) | insO → / ← fecE | IS911B regulator fragment/ferric citrate ABC transporter ATP binding subunit |
| RA | 4,532,409 | T→G | intergenic (‑758/+28) | sgcX ← / ← yjhP | putative endoglucanase with Zn‑dependent exopeptidase domain/putative methyltransferase YjhP |
| RA | 4,542,725 | (T)6→5 | intergenic (+92/‑390) | fimE → / → fimA | regulator for fimA/type 1 fimbriae major subunit |
| RA | 4,546,601 | C→T | I502I (ATC→ATT) | fimD → | type I fimbriae usher protein |
| RA | 4,630,375 | G→A | R50C (CGC→TGC) | ettA ← | energy‑dependent translational throttle protein EttA |
| RA | 4,636,925 | G→C | R77P (CGC→CCC) | creC → | sensory histidine kinase CreC |
| RA | 4,638,240 | G→A | L21L (TTG→TTA) | creD → | putative inner membrane protein CreD |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1196277 | 1211464 | 15188 | 39 [34] | [34] 35 | [icd]–mcrA | [icd],C0293,ymfD,ymfE,lit,intE,xisE,ymfH,ymfI,ymfJ,ymfK,ymfT,ymfL,ymfM,ymfN,ymfR,beeE,ymfQ,ycfK,tfaP,tfaE,pinE,mcrA |
| * | * | ÷ | NC_000913 | 1383143 | 1404628 | 21486 | 89 [0] | [0] 79 | [ycjW]–abgA | [ycjW],ycjX,ycjF,tyrR,tpx,ycjG,mpaA,ymjC,ymjD,ycjY,pgrR,mppA,ynaI,insH4,ynaJ,uspE,fnr,ogt,abgT,abgB,abgA |
| * | * | ÷ | NC_000913 | 1978495 | 1979270–1978503 | 9–776 | 113 [0] | [3] 131 | insB5–insA5 | insB5,insA5 |
| * | * | ÷ | NC_000913 | 3423882–3424234 | 3424457–3424238 | 5–576 | 36 [34] | [34] 39 | rrlD | 23S ribosomal RNA |
| * | * | ÷ | NC_000913 | 3762499–3764074 | 3765102–3764079 | 6–2604 | 35 [34] | [34] 35 | rhsA | rhs element protein RhsA |
| * | * | ÷ | NC_000913 | 3932009 | 3938982 | 6974 | 118 [0] | [0] 122 | [kup]–[rbsR] | [kup],rbsD,rbsA,rbsC,rbsB,rbsZ,rbsK,[rbsR] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1313982 | 107 (1.010) | 37 (0.350) | 31/596 | 2.4 | 25.7% | intergenic (‑319/‑38) | yciC/ompW | putative inner membrane protein/outer membrane protein W |
| ? | NC_000913 | = 1469240 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | = 1383142 | 0 (0.000) | 89 (0.840) | 59/598 | 0.5 | 100% | coding (820/999 nt) | ycjW | DNA‑binding transcriptional repressor YcjW |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1397238 | NA (NA) | 113 (1.060) | 71/598 | 0.2 | 100% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 1978494 | 0 (0.000) | intergenic (‑297/+24) | flhD/insB5 | DNA‑binding transcriptional dual regulator FlhD/IS1 family protein InsB | |||||
| * | ? | NC_000913 | 1404629 = | 0 (0.000) | 79 (0.740) | 55/598 | 0.7 | 100% | intergenic (‑64/‑112) | abgA/abgR | p‑aminobenzoyl‑glutamate hydrolase subunit A/putative LysR‑type DNA‑binding transcriptional regulator AbgR |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1467910 = | NA (NA) | 46 (0.430) | 39/598 | 1.6 | 53.5% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 1657525 | 40 (0.380) | intergenic (‑68/‑40) | ynfC/ynfD | PF06788 family lipoprotein YnfC/DUF1161 domain‑containing protein YnfD | |||||
| * | ? | NC_000913 | 1657521 = | 42 (0.400) | 43 (0.400) | 31/598 | 2.4 | 50.6% | intergenic (‑64/‑44) | ynfC/ynfD | PF06788 family lipoprotein YnfC/DUF1161 domain‑containing protein YnfD |
| ? | NC_000913 | = 2070271 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 1979271 = | 3 (0.030) | 128 (1.200) | 76/598 | 0.1 | 97.7% | intergenic (‑56/‑482) | insA5/uspC | IS1 family protein InsA/universal stress protein C |
| ? | NC_000913 | = 2102947 | NA (NA) | pseudogene (443/446 nt) | wbbL | interrupted rhamnosyltransferase WbbL | |||||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 56 (0.530) | 38/598 | 1.7 | 55.5% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 2819246 = | 45 (0.420) | intergenic (‑100/+135) | csrA/alaS | carbon storage regulator/alanine‑‑tRNA ligase/DNA‑binding transcriptional repressor | |||||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 33 (0.310) | 31/598 | 2.4 | 24.4% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3128122 | 102 (0.960) | intergenic (‑101/‑150) | glcD/glcC | glycolate dehydrogenase, putative FAD‑linked subunit/DNA‑binding transcriptional dual regulator GlcC | |||||
| * | ? | NC_000913 | = 2290113 | NA (NA) | 53 (0.500) | 43/596 | 1.3 | 53.5% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 2819249 | 46 (0.430) | intergenic (‑103/+132) | csrA/alaS | carbon storage regulator/alanine‑‑tRNA ligase/DNA‑binding transcriptional repressor | |||||
| * | ? | NC_000913 | = 3187426 | NA (NA) | 118 (1.110) | 76/596 | 0.1 | 100% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 3932008 | 0 (0.000) | coding (693/1869 nt) | kup | K(+):H(+) symporter Kup | |||||
| * | ? | NC_000913 | 3938983 = | 0 (0.000) | 122 (1.150) | 76/598 | 0.1 | 100% | coding (757/993 nt) | rbsR | DNA‑binding transcriptional dual regulator RbsR |
| ? | NC_000913 | 4498181 = | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||