mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 74 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,627,177 | 0 | T | C | 50.0% | ‑5.6 / 131.5 | 90 | T588A (ACC→GCC) | pdeF | cyclic di‑GMP phosphodiesterase PdeF |
| * | NC_000913 | 1,128,164 | 0 | T | G | 36.4% | 139.1 / 13.7 | 90 | V109G (GTG→GGG) | murJ | lipid II flippase MurJ |
| * | NC_000913 | 1,174,605 | 0 | T | C | 35.2% | 101.5 / 14.9 | 55 | G187G (GGA→GGG) | ycfT | inner membrane protein YcfT |
| * | NC_000913 | 2,008,373 | 0 | G | T | 34.2% | 53.1 / 11.7 | 39 | G33C (GGC→TGC) | yedE | putative selenium transporter YedE |
| * | NC_000913 | 959,069 | 0 | T | G | 33.3% | 102.3 / 16.7 | 79 | G86G (GGT→GGG) | aroA | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| * | NC_000913 | 2,346,525 | 0 | C | T | 33.0% | 124.4 / 96.4 | 106 | A554V (GCC→GTC) | nrdA | ribonucleoside‑diphosphate reductase 1 subunit alpha |
| * | NC_000913 | 811,721 | 0 | T | G | 33.0% | 125.6 / 17.0 | 97 | V67G (GTG→GGG) | bioC | malonyl‑acyl carrier protein methyltransferase |
| * | NC_000913 | 3,308,903 | 0 | A | G | 32.9% | 105.2 / 48.8 | 87 | C8R (TGT→CGT) | nlpI | lipoprotein NlpI |
| * | NC_000913 | 2,988,879 | 0 | A | C | 30.9% | 67.0 / 11.0 | 42 | P126P (CCA→CCC) | yqeI | putative transcriptional regulator YqeI |
| * | NC_000913 | 2,326,450 | 0 | T | G | 30.8% | 112.1 / 14.4 | 65 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 2,962,495 | 0 | T | G | 30.6% | 154.0 / 11.2 | 112 | S90S (TCA→TCC) | ppdC | prepilin‑type N‑terminal cleavage/methylation domain‑containing protein PpdC |
| * | NC_000913 | 1,014,019 | 0 | A | G | 29.8% | 139.3 / 11.9 | 67 | E254G (GAA→GGA) | pqiB | intermembrane transport protein PqiB |
| * | NC_000913 | 4,027,233 | 0 | T | A | 29.8% | 81.1 / 12.2 | 47 | intergenic (+5/+376) | fre/fadA | NAD(P)H‑flavin reductase/3‑ketoacyl‑CoA thiolase |
| * | NC_000913 | 3,531,440 | 0 | A | C | 29.8% | 264.5 / 17.0 | 132 | Y334D (TAT→GAT) | yhgE | putative transport protein YhgE |
| * | NC_000913 | 4,213,765 | 0 | A | C | 29.6% | 162.9 / 15.8 | 99 | V120G (GTG→GGG) | yjaB | peptidyl‑lysine N‑acetyltransferase YjaB |
| * | NC_000913 | 3,025,673 | 0 | A | T | 29.4% | 99.1 / 15.7 | 51 | L441F (TTA→TTT) | xanQ | xanthine:H(+) symporter XanQ |
| * | NC_000913 | 4,457,105 | 0 | A | G | 28.4% | 148.7 / 21.5 | 81 | I441V (ATC→GTC) | mpl | UDP‑N‑acetylmuramate‑‑L‑alanyl‑gamma‑D‑glutamyl‑ meso‑2,6‑diaminoheptanedioate ligase |
| * | NC_000913 | 354,288 | 0 | T | G | 28.3% | 195.0 / 12.6 | 93 | V528G (GTG→GGG) | prpE | propionyl‑CoA synthetase |
| * | NC_000913 | 974,449 | 0 | A | G | 28.2% | 150.5 / 21.3 | 79 | D44G (GAT→GGT) | mukF | chromosome partitioning protein MukF |
| * | NC_000913 | 4,252,101 | 0 | T | C | 28.1% | 107.6 / 48.6 | 65 | intergenic (+1627/‑405) | malM/ubiC | maltose regulon periplasmic protein/chorismate lyase |