mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 28 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,001,911 | 0 | G | A | 61.5% | ‑4.1 / 10.2 | 13 | intergenic (‑122/+1) | fliA/fliX | RNA polymerase sigma factor FliA/small RNA FliX |
| * | NC_000913 | 811,721 | 0 | T | G | 38.7% | 96.0 / 20.0 | 75 | V67G (GTG→GGG) | bioC | malonyl‑acyl carrier protein methyltransferase |
| * | NC_000913 | 1,987,001 | 0 | A | C | 38.1% | 68.2 / 10.1 | 43 | H26P (CAC→CCC) | ftnB | putative ferritin‑like protein |
| * | NC_000913 | 803,869 | 0 | G | T | 36.4% | 42.6 / 11.0 | 33 | V123L (GTG→TTG) | ybhJ | putative hydratase YbhJ |
| * | NC_000913 | 3,206,435 | 0 | C | T | 34.4% | 38.0 / 12.3 | 32 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 17,000 | 0 | C | T | 33.3% | 48.7 / 17.5 | 42 | noncoding (49/59 nt) | sokC | small regulatory RNA antitoxin SokC |
| * | NC_000913 | 1,589,075 | 0 | A | C | 32.0% | 87.2 / 10.7 | 50 | G309G (GGT→GGG) | ydeT | fimbrial usher domain‑containing protein YdeT |
| * | NC_000913 | 433,634 | 0 | T | G | 31.7% | 102.3 / 10.4 | 84 | G60G (GGT→GGG) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase |
| * | NC_000913 | 433,649 | 0 | T | G | 30.5% | 95.8 / 11.1 | 86 | G65G (GGT→GGG) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase |
| * | NC_000913 | 4,604,344 | 0 | C | T | 30.4% | 82.2 / 12.7 | 46 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 1,320,516 | 0 | G | A | 28.3% | 76.7 / 13.9 | 54 | S290F (TCT→TTT) | trpD | anthranilate synthase subunit TrpD |
| * | NC_000913 | 4,161,148 | 0 | G | A | 26.9% | 107.5 / 14.0 | 52 | E28K (GAA→AAA) | fabR | DNA‑binding transcriptional repressor FabR |
| * | NC_000913 | 4,429,990 | 0 | A | T | 26.9% | 88.4 / 15.4 | 52 | M43L (ATG→TTG) | cycA | D‑serine/alanine/glycine/:H(+)symporter |
| * | NC_000913 | 941,713 | 0 | T | G | 26.3% | 74.5 / 14.0 | 39 | V252G (GTG→GGG) | dmsA | dimethyl sulfoxide reductase subunit A |
| * | NC_000913 | 1,159,837 | 0 | A | G | 25.7% | 157.3 / 10.6 | 70 | I572T (ATC→ACC) | fhuE | ferric coprogen/ferric rhodotorulic acid outer membrane transporter |
| * | NC_000913 | 2,332,823 | 0 | A | G | 25.7% | 149.4 / 16.3 | 70 | intergenic (‑3026/+1513) | yfaQ/yfaT | tandem DUF2300 domain‑containing protein YfaQ/DUF1175 domain‑containing protein YfaT |
| * | NC_000913 | 1,603,712 | 0 | A | T | 24.0% | 116.3 / 12.3 | 51 | I232F (ATC→TTC) | lsrC | Autoinducer‑2 ABC transporter membrane subunit LsrC |
| * | NC_000913 | 4,161,142 | 0 | C | A | 24.0% | 113.0 / 11.8 | 50 | Q26K (CAA→AAA) | fabR | DNA‑binding transcriptional repressor FabR |
| * | NC_000913 | 646,777 | 0 | G | T | 23.6% | 110.6 / 11.3 | 55 | Q245K (CAA→AAA) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| * | NC_000913 | 3,611,455 | 0 | G | A | 23.2% | 144.2 / 16.7 | 69 | C93C (TGC→TGT) | yhhS | putative transporter YhhS |