mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 56 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 40.0% | 32.3 / 31.5 | 35 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 811,721 | 0 | T | G | 38.4% | 113.2 / 10.6 | 73 | V67G (GTG→GGG) | bioC | malonyl‑acyl carrier protein methyltransferase |
| * | NC_000913 | 2,483,254 | 0 | G | A | 32.6% | 85.4 / 18.8 | 49 | S29L (TCA→TTA) | emrK | tripartite efflux pump membrane fusion protein EmrK |
| * | NC_000913 | 2,185,199 | 0 | T | G | 32.5% | 162.0 / 13.6 | 82 | T35P (ACC→CCC) | thiM | hydroxyethylthiazole kinase |
| * | NC_000913 | 1,986,995 | 0 | A | C | 32.3% | 135.7 / 10.7 | 62 | Y24S (TAC→TCC) | ftnB | putative ferritin‑like protein |
| * | NC_000913 | 1,826,379 | 0 | T | C | 32.1% | 94.5 / 10.3 | 54 | E182G (GAG→GGG) | astE | succinylglutamate desuccinylase |
| * | NC_000913 | 1,584,861 | 0 | T | G | 32.0% | 153.0 / 10.3 | 80 | K542N (AAA→AAC) | ydeP | putative oxidoreductase YdeP |
| * | NC_000913 | 836,756 | 0 | T | G | 30.8% | 143.2 / 11.4 | 65 | F136V (TTT→GTT) | hcxB | hydroxycarboxylate dehydrogenase B |
| * | NC_000913 | 3,270,455 | 0 | G | T | 30.6% | 86.7 / 15.7 | 49 | noncoding (138/377 nt) | rnpB | RNase P catalytic RNA component |
| * | NC_000913 | 2,851,654 | 0 | T | G | 30.6% | 158.7 / 15.0 | 75 | G218G (GGT→GGG) | hypB | hydrogenase isoenzymes nickel incorporation protein HypB |
| * | NC_000913 | 4,065,598 | 0 | G | A | 30.6% | 66.0 / 10.3 | 36 | L57L (CTG→TTG) | yihO | putative sulfoquinovose transporter |
| * | NC_000913 | 2,386,862 | 0 | G | A | 30.3% | 59.4 / 11.0 | 34 | intergenic (+31/‑72) | yfbL/yfbM | putative peptidase YfbL/DUF1877 domain‑containing protein YfbM |
| * | NC_000913 | 2,296,764 | 0 | T | G | 30.0% | 193.6 / 11.7 | 90 | L87F (TTA→TTC) | ccmB | cytochrome c maturation protein B |
| * | NC_000913 | 2,874,404 | 0 | A | C | 29.1% | 188.3 / 10.6 | 86 | V339G (GTG→GGG) | cysN | sulfate adenylyltransferase subunit 1 |
| * | NC_000913 | 3,261,055 | 0 | A | C | 28.4% | 209.1 / 12.4 | 96 | V455G (GTG→GGG) | tdcE | 2‑ketobutyrate formate‑lyase/pyruvate formate‑lyase 4 |
| * | NC_000913 | 366,534 | 0 | C | T | 28.3% | 109.6 / 13.3 | 53 | R326K (AGA→AAA) | lacI | DNA‑binding transcriptional repressor LacI |
| * | NC_000913 | 2,185,238 | 0 | A | G | 28.2% | 176.9 / 11.3 | 78 | S22P (TCC→CCC) | thiM | hydroxyethylthiazole kinase |
| * | NC_000913 | 4,065,580 | 0 | T | A | 27.8% | 74.0 / 10.8 | 36 | T63S (ACC→TCC) | yihO | putative sulfoquinovose transporter |
| * | NC_000913 | 3,388,570 | 0 | A | C | 27.3% | 188.7 / 10.1 | 77 | V186G (GTG→GGG) | aaeA | aromatic carboxylic acid efflux pump membrane fusion protein |
| * | NC_000913 | 3,261,052 | 0 | T | C | 27.1% | 208.4 / 16.9 | 96 | D456G (GAC→GGC) | tdcE | 2‑ketobutyrate formate‑lyase/pyruvate formate‑lyase 4 |