Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,065,598 | 0 | G | A | 30.6% | 66.0 / 10.3 | 36 | L57L (CTG→TTG) | yihO | putative sulfoquinovose transporter |
Reads supporting (aligned to +/- strand): ref base G (22/3); new base A (0/11); total (22/14) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.06e-07 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GAGCAGTTCATCAGACTGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGT‑TGCAATTAACGCC‑GCCGGAACC‑GCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAA‑TATTTTTCC‑GCGAGTCGAGTAAAAATCC‑GGTGAGCATATCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTT > NC_000913/4065360‑4065840 | gAGCAGTTCATCAGACTGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGT‑TGCAATTAACGCC‑GCCGGAACC‑GCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAA‑TATTTTTCC‑GCGAGTCGAGTAAAAATCC‑GGTGAGCATATCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATccc > 1:444738/1‑251 (MQ=255) aCATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGT‑TGCAATTAACGCC‑GCCGGAACC‑GCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAA‑TATTTTTCC‑GCGAGTCGAGTAAAAATCC‑GGTGAGCATATCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCg > 2:417855/1‑251 (MQ=255) agaaaaacacgggggtggtAAGCGTCGTTTTAACCGGAAAAAAAAGGGTGGGGGCAAAAAAC‑GGAG‑GTGTGGAATTAACCCCCGCGGAAACC‑TCTGAATAAAAAAAAAGGGGACAAATTTTGCCTTGAGGCCAAA‑TTTTTTCCC‑GCGGGTGGAGAAAAAACCC‑GGTGAGCATATCGGAAAAGGCGG‑AAAAAAAC‑TCCCCCACCAGAAAGAAAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGta < 2:565705/238‑1 (MQ=255) aaCAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGT‑TGCAATTAACGCC‑GCCGGAACC‑GCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAA‑TATTTTTCC‑GCGAGTCGAGTAAAAATCC‑GGTGAGCATATCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATaaa > 1:582250/1‑250 (MQ=255) ggTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGT‑TGCAATTAACGCC‑GCCGGAACC‑GCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAA‑TATTTTTCC‑GCGAGTCGAGTAAAAATCC‑GGTGAGCATATCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTgagg > 1:740201/1‑250 (MQ=255) ggCAAACAAAAGGTGGTGGCGATAAACTGGAGCGT‑TGCAATTAACGCC‑GCCGGAACC‑GCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAA‑TATTTTTCC‑GCGAGTCGAGTAAAAATCC‑GGTGAGCATATCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCag > 2:359283/1‑249 (MQ=255) aaaaatggtggtGTCTATAAGCGGGAGCGT‑TGCAATCATCGCC‑CCGGGACCC‑GCTGAATAAAAAAAAAAGAGAGCAAATTCGCCTTGAAGCCCAA‑TATTTTGCC‑GCAAGTCGAATAAAAATCG‑GGTGAGCATAGCGGTAAACGCGG‑AAAAAAGC‑TTCGCAAACAAAAATAAAAACCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTa < 2:703362/245‑1 (MQ=255) aaaGGTGGTGGCGATAAACTGGAGCGT‑TGCAATTAACGCC‑GCCGGAACC‑GCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAA‑TATTTTTCC‑GCGAGTCGAGTAAAAATCC‑GGTGAGCATATCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAAt > 2:439950/1‑251 (MQ=255) ggggagaaaaacgggggggT‑TGAAATTAACGCC‑GC‑GGAACCCGCTGAATAAAAAAAAAAGGG‑CAAAAATTGGCTTTAAGCCCAAATTTTTTTCC‑CGGAGTGAAGTAAAAACCC‑GGGGAGAATATCGG‑AAACGGGG‑AAAAAAACCTCCGCCACCAAAAAAAAAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAAcc < 2:274355/233‑1 (MQ=255) ggCGATAAACTGGAGCGT‑TGCAATTAACGCC‑GCCGGAACC‑GCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAA‑TATTTTTCC‑GCGAGTCGAGTAAAAATCC‑GGTGAGCATATCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCg > 2:677551/1‑250 (MQ=255) gcaaaaaacgggggCGT‑TGCAATTACCGCC‑GCCGAACCC‑GCTGCATAAAAAAAAAAGGGACGAAATTTCCCTTTAGGCCCAA‑TATTTTTCC‑GCGAGTCGAGTAAAAACCC‑GGTGAGCATATCGGAAAACGGGA‑TAAAAAAC‑TTCGCCACAAAAAAGATAACCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGAc < 1:439950/238‑1 (MQ=255) gATAAACTGGAGCGT‑TGCAATTAACGCC‑GCCGGAACC‑GCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAA‑TATTTTTCC‑GCGAGTCGAGTAAAAATCC‑GGTGAGCATATCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGt > 2:178538/1‑251 (MQ=255) aaaaaCTGGAGCGT‑TGAAATAACCCCC‑GCCGGAACC‑GCTGCATATAAAAAAAAGGGACGAAATTTCCCTTTAGCCCAAA‑TTTTTTTCC‑GCGAGTCGAGAAAAAACCC‑GGTGAGCATATGGGTAAACGCGG‑AAAAAACC‑TCCCCCCCCAAAAAAAAAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTc < 1:216896/249‑1 (MQ=255) gtgtttgaaataaccccc‑gccgGAACC‑GCTGAAAAAAAAATAAAGGGACAAATTTTGCCTTTAG‑CCCAA‑TTTTTTTCCCGGGAGTCAATAAAAAATCC‑GGTAAGCATACCGGAAAACGCGA‑AAAAAACC‑TCCCCCACAAAAAAGATAACCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCccatacc < 1:196849/235‑1 (MQ=255) aaaataaaCGCC‑GCCGGACCC‑GCTGAATAAAAAAAAAAGGGAAGAAATTGGCCTTTAGGCCAAA‑TATTTTCCC‑GCGAGTCGAATAAAAATCC‑GGTGAGCATATCGGTAAACGGGG‑AAAAAAAC‑TTCCCCACCAGAAAAAAAACCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGc < 1:90938/245‑1 (MQ=255) atatAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAA‑TATTTTTCC‑GCGAGTCGAGTAAAAATCC‑GGTGAGCATATCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGCTAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGtttt > 2:636508/1‑250 (MQ=255) ataaaGGGACGAAATTTGCCTTTAGGCCCAA‑TATTTTTCC‑GCGAGTCGAGTAAAAATCC‑GGTGAGCATATCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTc > 1:579304/1‑249 (MQ=255) aGGGACGAAATTTGCCTTTAGGCCCAA‑TATTTTTCC‑GCGAGTCGAGTAAAAATCC‑GGTGAGCATATCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTgg > 1:571227/1‑250 (MQ=255) gAAATTTGCCTTTAGGCCCAA‑TATTTTTCC‑GCGAGTCGAGTAAAAATCC‑GGTGAGCATATCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATgg > 1:342995/1‑251 (MQ=255) gAAATTTGCCTTTAGGCCCAA‑TATTTTTCC‑GCGAGTCGAGTAAAAATCC‑GGTGAGCATATCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATgg > 2:527508/1‑251 (MQ=255) cgCCTTTAGGCACTA‑TATTTTCCC‑GCGAGACGAGTAAAAAGCC‑GGTGAGTAGCTCGGTACA‑GCGGGAAAAAAAC‑TCCGCCACCAAAAGGAAAACCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTGTTAATGTCAGTGGATTATGGTCAGAc < 2:740201/250‑1 (MQ=255) cTTTAGGCCCAA‑TATTTTTCC‑GCGAGTCGAGTAAAAATCC‑GGTGAGCATATCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACAt > 1:452051/1‑250 (MQ=255) ggCCCAA‑TATTTTTCC‑GCGAGTCGAGTAAAAATCC‑GGTGAGCATCTCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCAc > 1:36908/1‑251 (MQ=255) attttttttCG‑GAGAGTCGAGTAAAAACCG‑GGTGAGCAGACCGGTAAACGGGA‑AAAAAAAC‑TCCCCCACCAAAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCtt < 1:643380/247‑1 (MQ=255) cgagtcgagtAAAAATCC‑GGTGAGCATATCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGc > 1:39192/1‑251 (MQ=255) cgagtcgagtAAAAATCC‑GGTGAGCATATCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGc > 1:504678/1‑251 (MQ=255) agtcgagtAAAAATCC‑GGTGAGCATATCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGAt > 2:222034/1‑178 (MQ=255) agtcgagaAAAAACCC‑GGGGAGCATATGGGTAAACGCGG‑AAAAAAAC‑TCCCCCACCAAAAAAATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGAt < 1:222034/178‑1 (MQ=255) ccacgcccctctcccatcctagcttatCTGTAACCGGGG‑TAAAAACC‑TCCGCCACCAAAAAATTACTCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCan < 2:321755/227‑2 (MQ=255) gaagaaaaaTCCCGGTGAGCATATCGGAAAACGCGA‑TAAAAACC‑TCCGCCACCAAAAAGAAAACACCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGc < 2:582250/247‑1 (MQ=255) aaaaaaaCCC‑GGTGAGCATATGGGTAAACGCGA‑AAAAAACC‑TCCCCCACCAAAAAAATAACCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGcgtc < 2:579304/249‑1 (MQ=255) aGCATATCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCACGCAg > 1:321755/1‑231 (MQ=255) atatCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGc > 2:8615/1‑251 (MQ=255) aaaC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCt > 1:49646/1‑250 (MQ=255) aC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTT‑ATTATTATTAAGCCGGTCGGTTACCGGCTTCTaacc > 2:737979/1‑248 (MQ=255) ccccacaaGAAAAAAAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCtt < 2:444738/249‑1 (MQ=255) | GAGCAGTTCATCAGACTGTATGAAAGTCCAAACATCATAAACAGCGCGGTGGCAATCGTCGTTTTAACCGGCAAACAAAAGGTGGTGGCGATAAACTGGAGCGT‑TGCAATTAACGCC‑GCCGGAACC‑GCTGCATATAAAATAAAGGGACGAAATTTGCCTTTAGGCCCAA‑TATTTTTCC‑GCGAGTCGAGTAAAAATCC‑GGTGAGCATATCGGTAAACGCGG‑TAAAAAAC‑TTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGAGTACCGATGCAGAGCATTAAATTCGAACCGACGTCGCCCATACCATAGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTT > NC_000913/4065360‑4065840 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |