mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.39.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 47.8% | ‑6.4 / 29.0 | 24 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 811,721 | 0 | T | G | 35.4% | 141.3 / 16.7 | 96 | V67G (GTG→GGG) | bioC | malonyl‑acyl carrier protein methyltransferase |
| * | NC_000913 | 786,855 | 0 | A | C | 32.9% | 119.8 / 18.8 | 70 | G247G (GGT→GGG) | gpmA | 2,3‑bisphosphoglycerate‑dependent phosphoglycerate mutase |
| * | NC_000913 | 1,159,837 | 0 | A | G | 32.8% | 111.0 / 13.9 | 59 | I572T (ATC→ACC) | fhuE | ferric coprogen/ferric rhodotorulic acid outer membrane transporter |
| * | NC_000913 | 4,604,344 | 0 | C | T | 31.4% | 59.3 / 10.3 | 36 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,027,233 | 0 | T | A | 29.5% | 73.1 / 11.6 | 44 | intergenic (+5/+376) | fre/fadA | NAD(P)H‑flavin reductase/3‑ketoacyl‑CoA thiolase |
| * | NC_000913 | 119,396 | 0 | C | T | 26.3% | 92.9 / 14.2 | 57 | S39F (TCT→TTT) | ampE | protein AmpE |
| * | NC_000913 | 3,947,850 | 0 | C | T | 26.2% | 83.2 / 12.9 | 42 | E40K (GAA→AAA) | hdfR | DNA‑binding transcriptional dual regulator HdfR |
| * | NC_000913 | 4,336,901 | 0 | T | A | 26.1% | 79.7 / 14.1 | 46 | Y44F (TAT→TTT) | adiC | arginine:agmatine antiporter |
| * | NC_000913 | 4,161,148 | 0 | G | A | 25.5% | 105.2 / 12.6 | 51 | E28K (GAA→AAA) | fabR | DNA‑binding transcriptional repressor FabR |
| * | NC_000913 | 2,434,861 | 0 | G | T | 24.6% | 111.7 / 13.9 | 61 | P259Q (CCA→CAA) | truA | tRNA pseudouridine(38‑40) synthase |
| * | NC_000913 | 2,337,723 | 0 | A | C | 23.4% | 133.3 / 10.9 | 65 | G566G (GGT→GGG) | gyrA | DNA gyrase subunit A |
| * | NC_000913 | 106,122 | 0 | A | G | 23.2% | 151.3 / 11.1 | 70 | D273G (GAT→GGT) | ftsZ | cell division protein FtsZ |
| * | NC_000913 | 4,296,286 | 0 | C | T | 23.1% | 32.4 / 11.6 | 26 | intergenic (+492/+150) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 1,466,276 | 0 | T | C | 22.0% | 189.0 / 11.7 | 98 | pseudogene (885/2518 nt) | ydbA | putative outer membrane protein, N‑terminal fragment |
| * | NC_000913 | 3,568,732 | 0 | C | G | 21.6% | 85.0 / 10.4 | 37 | P199P (CCG→CCC) | glgC | glucose‑1‑phosphate adenylyltransferase |
| * | NC_000913 | 4,161,142 | 0 | C | A | 21.6% | 104.0 / 10.1 | 51 | Q26K (CAA→AAA) | fabR | DNA‑binding transcriptional repressor FabR |
| * | NC_000913 | 862,568 | 0 | A | T | 20.8% | 192.2 / 11.8 | 77 | I13I (ATT→ATA) | ybiW | putative pyruvate formate lyase |
| * | NC_000913 | 433,641 | 0 | G | A | 20.3% | 82.3 / 10.4 | 65 | A63T (GCC→ACC) | ribD | fused diaminohydroxyphosphoribosylaminopyrimidine deaminase/5‑amino‑6‑(5‑phosphoribosylamino)uracil reductase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2558698 | 58 (0.980) | 4 (0.070) | 4/478 | 4.3 | 5.8% | intergenic (‑19/‑160) | eutB/intZ | ethanolamine ammonia‑lyase subunit alpha/putative phage integrase IntZ |
| ? | NC_000913 | 2565489 = | 74 (1.290) | coding (1396/1404 nt) | eutA | ethanolamine ammonia‑lyase reactivase EutA | |||||