| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,027,233 | 0 | T | A | 29.5% | 73.1 / 11.6 | 44 | intergenic (+5/+376) | fre/fadA | NAD(P)H‑flavin reductase/3‑ketoacyl‑CoA thiolase |
| Reads supporting (aligned to +/- strand): ref base T (20/11); new base A (1/12); total (21/23) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.03e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GAGGCGCTTTCGTTGAAGCATCCTGGTCTGCAAGTGGTGCCGGTGGTTGAACAACCGGAAGCGGGCTGGCGTGGG‑CGTACTGGCACCGTGTTAACGGCGGTATTGCAGGATCACGGTACGCTGGCAGAGCATGATATCTATATTGCCGGACGTTTTGAGATGGCG‑AAAA‑TTGCCCGCGATCTGTTTTGCAGTG‑AGCGTAATGCGCGGGAAGATCGCCTGTTT‑GGCGA‑TG‑CGTTTGCATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGAT > NC_000913/4026983‑4027480 | gAGGCGCTTTCGTTGAAGCATCCTGGTCTGCAAGTGGTGCCGGTGGTTGAACAACCGGAAGCGGGCTGGCGTGGG‑CGTACTGGCACCGTGTTAACGGCGGTATTGCAGGATCACGGTACGCTGGCAGAGCATGATATCTATATTGCCGGACGTTTTGAGATGGCG‑AAAA‑TTGCCCGCGATCTGTTTTGCAGTG‑AGCGTAATGCGCGGGAAGATCGCCTGTTT‑GGCGA‑TG‑CGTTTGCATTTATC‑TGAGatat < 2:70722/251‑1 (MQ=255) gtgggaaaGTGGTGCGGGTGGTGAAACACCCGGAAGCGGTCTGG‑GTGGGGCGTACTGGCCCGGTTTTACGGGGGGTATTGCAGGATCGCGTAACGCTGGCAGAGAATGTTATCTATATTGCCGGACGTTTTGAGATGGCG‑AAAA‑TTGCCCGTTTTCTTTTTGGCAGTT‑AGCGTAAGGCGCGGAAAGACCGCCTTTTT‑GGGGA‑TG‑CGTGTGCTTTTAAC‑TGAAATAAAAAAAACCCCGCCCCTGACAGGCgg < 2:180343/245‑1 (MQ=255) ggcgggggggtaaacaccgggaggCGGGGTGGCGGGGG‑CGTACGGGCAGCGTGTTAAGGGCGGTATTGAAGGATCACGGTACGCTGGCAGAGCATAATATCTATATGGCGGGACGTTTTGAGAGGGCA‑AAAA‑TGCCCCGCGATTTTTTTGGAAGTG‑AGCGTAATGCGGGGAAAGATCGCCTGTTT‑GGCGA‑TG‑CGTTTGAATTTATC‑TGAGATAAAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCaa < 2:266805/228‑1 (MQ=255) cGGTGGTTGAACAACCGGAAGCGGGCTGGCGTGGG‑CGTACTGGCACCGTGTTAACGGCGGTAATTTAGGATAACGGGAAGCTGGCAGAGAAAGATATATTTATTTGCGGGCGTTTTGTGATGGGGGAAAA‑TGGCCC‑CGGTCTGTTTTTCAGGG‑AGGGGAAAGCGCGGGGAGAACGCCTGGTT‑GGGGC‑TGTGGTTTG‑ATTTTTT‑TGAGATAAAAAAAAAACCCCCCCCGACAGGCggggaaaaaaggaaac > 2:31317/1‑237 (MQ=255) cgaaagcgggtggggggggg‑CGTCCTGCCACCTTGTTACCGGGGGTATTGCAGGACCACGGTAGGCTGGCAGAGAATTATATCTATTTGGCCGGAGTTTTTGAGAGGGGA‑AAAA‑TTGCCCGCGTTCTGTTTGGCAGTG‑AGCGTAATGCGCGGGAAGATCGCTTGTTG‑GGCGG‑TG‑CGTTGGCTTTTATC‑TGAGATAAAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTg < 1:247319/234‑1 (MQ=255) aaGCGGGCTGGCGTGGG‑CGTACTGGCACCGTGTTAACGGCGGTATTGCAGGGTCACGGTACGCTGGCAGAGCATGATATCTATATTGCCGGACGTTTTGAGATGGCG‑GAAA‑TTGCCCGCGATCTGTTTTGCAGTG‑AGCGGAATGCGCGGGAAGATCGCCTGTTT‑TGCGA‑TG‑CGTTTGCATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑GAGAAAGGCAACCAAACAGTTTTTCAGTggg > 1:284700/1‑249 (MQ=255) ggggttgggtgggg‑CTTACGGGCCCCGTGTTACCGGCGGTATGGCAGGATCACGGTACGCTGGCAGAGCATGATATTTATATTGCGGGACGTTTTGAGATGGCG‑AAAA‑TTGCCCGCTATTTTTTTTGCAGTG‑AGCTTAATGGGTGGGAAGATCGCTGGTTG‑GGCTA‑TG‑TGTTTGCTTTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCAttt < 1:360369/240‑1 (MQ=255) ggCTGGCGTGGG‑CGTACTGGCACCGTGTTAACGGCGGTATTGCAGGGTCACGGTACGCTGGCAGAGCATGATATCTATATTTCCGGACGTTTTGAGATGGCG‑GAAA‑TTGCCCCCGATCTGTTTTGCAGTG‑AGCGTAATGCGCGGGAAGATCGCCTGTTT‑TGCGA‑TG‑CGTTTGCATTTTTC‑TGAGATATAAAAAAAACCCCCCCTGACAGGCGGG‑GAGAACGGCAAATaaaaatttttttcgggggatttt > 1:268116/1‑230 (MQ=255) ggcgggggcgagcTGGCACCGTGTTAACGGCGGTATTGAGGGATCACGGTACGCTGGCAGAGCATGATATCTTTATTGCCGGACTTTTTGAGATGGCG‑AAAA‑TTGCCCGCGATTTGTTTGGCAGTG‑GGCGAAATGCGGGGGAAGACCGCCTGTTT‑GGCGA‑TG‑GGTTTGAATTGATC‑GGAGATATAAAAAACCCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATGCAGTGGCATTTAGATCt < 1:374880/239‑1 (MQ=255) gggcgtccgggcccggtgtTAACGGTGGTAGTGCAGGATCACGGTCCGCTGGCAGAGCATGATATCTATATTGCCGGACTTTTTGAGATGGGG‑AAAA‑TTCCCCGCGTTCTGTTTTGCAGTG‑AGCGTAATGCGCGGAAAGATCGCCTGTTG‑GGCGA‑TG‑CGTTTGCTTTTATT‑TGGGAGATAAAAAACCCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGAc < 1:55604/236‑1 (MQ=255) g‑CGTACTGGAACCGTGTTAACGGCGGTATTTCCGGATCACGGTAAGCTCGCAGAGCATGAAATCTATATTGAGCGACGTTTTGAAATAGCG‑AAAA‑TTGACCGCGATCTGTTTTGTAGGG‑GGAGTAATGCGCGGGGAAATCGCCTGTTT‑GGGGG‑TG‑GGTTTGCATTTATC‑TGAGATATAAAAAAACCCGCCCCAGAACGGCGGGGAAAAACGGCAA‑TAAAATATTTTTCAGGGGCAtttttatctttaacgg > 1:362568/1‑238 (MQ=255) gtctccgtgttacgggggatATTGAAGGATCCCGGTCCGCGGGAAGGGTATGATATCTATTTTGCCGGGCTTTTTGAGTTGG‑G‑AAAAGTTGCCCGCGATCTGTTGTGCGGTG‑GGCGTAATGCGCGGGAAGTTCGCTTTTTT‑GGCGA‑TG‑CGTTTGCATTTTTCGTG‑GATAAAAAAACTCCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGGATCTGGc < 1:57483/232‑1 (MQ=255) ggCACCGTGTAAGCGGCGTTATTGCGGGTGCACGGTACGCTGGCAGAGCATGATATCTATATTGCCGGAGGTTTGGAGATGGCA‑AAAA‑TTGCCCGCGATCTGTTTTGCAGTG‑GGCGTAATGCGCGGGAAGATCGCTTGTTT‑GGCGA‑TG‑CGTTTGAATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGc < 1:11206/251‑1 (MQ=255) cGTGTTAACGGGGGTATTGCAGGATCACGGTACGCTGGCAGAGCATGATATCTATAGTGCCGGACGTTTTGAGATGGCG‑AAAA‑TTGCCCGCGATCTGTTTTGCAGTG‑AGCGTAATGCGGGGGAAGACCGCTTGTTT‑GGCGA‑GG‑CGTTGGCATTTATC‑GGAGATAAAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAAcc < 1:201472/251‑1 (MQ=255) gggaggatacgggTAGGCTGGAAGAGCATGATATTTATATTGCCGGACGTTTTGAGATGGCG‑AAAA‑TTGCCCGAGATTTTTTTTGAGGTG‑AGGTTAATGCGCGGGAAGACCGCCTGTTT‑GGCAA‑TG‑GGTTGGCATTTATC‑TGAAATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCt < 2:417440/240‑1 (MQ=255) ggTACGCTGGCAGAGCATGATATCTATATTGCCGGACGTTTTGAGATGGCG‑AAAA‑TTGCCCGCGATCTGTTTTGCAGTG‑AGCGTAATGCGCGGGAAGATCGCCTGTTT‑GGCGA‑TG‑CGTTTGCATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCtt > 1:263248/1‑250 (MQ=255) gTACGCTGGAAGAGCATGATATCTATATTGCCGGACGTTTTGAGATGGCG‑AAAA‑TTGCCCGCGATCTTTTTTGCAGTG‑AGCGTAATGCGCGGGAAGATCGCCTGTTT‑GGCGA‑TG‑CGTTTGCATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTAt < 1:92474/251‑1 (MQ=255) gagCATGATATCTATATTGCCGGACGTTTTGAGATGGCG‑AAAA‑TTGCCCGCGATCTGTTTTGCAGTG‑AGCGTAATGCGCGGGAAGATCGCCTGTTT‑GGCGA‑TG‑CGTTTGCATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACa > 1:113499/1‑250 (MQ=255) cATGATATCTATATTGCCGGACGTTTTGAGATGGCG‑AAAA‑TTGCCCGCGATCTGTTTTGCAGTG‑AGCGTAATGCGCGGGAAGATCGCCTGTTT‑GGCGA‑TG‑CGTTTGCATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAAt > 1:68709/1‑250 (MQ=255) cTATATTGCCGGACGTTTTGAGATGGCG‑AAAA‑TTGCCCGCGATCTGTTTTGCAGTG‑AGCGTAATGCGCGGGAAGATCGCCTGTTT‑GGCGA‑TG‑CGTTTGCATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGCATCCGGCAAAACATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAAc > 1:59635/1‑251 (MQ=255) atatTGCGGGACGTTTTGAGATGGGG‑AAAA‑TTGCCCCGGATCTGTTTGGCAGTGGAG‑GTAATGCGCGGGAAGATCGC‑TGTTTTGGCGA‑TG‑CGTTTGCATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAAcc < 1:135834/250‑1 (MQ=255) atatTGCCGGACGTTTGGAGAGGGCA‑AAAA‑TGGCCCGCGTTTTGTTTTGCAGTG‑AGCTTATTGCGGGGGAAGATCGCCTGTTT‑GGCGA‑TG‑CGTTTGCTTTTATC‑TGAGATAAAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAAcc < 1:236531/250‑1 (MQ=255) atggccggtgtttttGAGAGGGCG‑AAAA‑TTGCCCGAGTTGTGTTTTGCCGTG‑AGCGTATGGCGCGGGAAAATCGTCTGTTT‑GGCGA‑GG‑CGTTTGCTTTAATG‑TGAGATATAAAAAACCCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTa < 1:103388/240‑1 (MQ=255) gCCGGACGTTTTGAGATGGCG‑AAAA‑TTGCCCGCGATCTGTTTTGCAGTG‑AGCGTAATGCGCGGGAAGATCGCCTGTTT‑GGCGA‑TG‑CGTTTGCATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAAATAAACTGTTATTCCGAGGCATTTAGATCTATGACGTAACTGGCAAACCATGCCCGATGCGAACCTGTCGCGTCTTATTGTTCCTCCAAATACTCCAAACCCTAGGc > 1:412691/1‑251 (MQ=255) gggACGTTTTGGGATGGCG‑AAAA‑TGGCCCGCAATCTGTTTTGCAGGG‑GGTGTAAGGCGGGGGAAGATCCCCTGTTG‑GGCGA‑TG‑CGTTTGCATTTATC‑TAAGATAAAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCg < 2:268116/250‑1 (MQ=38) gACGTTTTGAGATGGCG‑AAAA‑TTGCCCGCGATCTGTTTTGCAGTG‑AGCGTAATGCGCGGGAAGATCGCCTGTTT‑GGCGA‑TG‑CGTTTGCATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCCACTTAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACCAATAGTCCGAACCGGAGGcccgg > 2:59127/1‑248 (MQ=255) aCGTTTTGAGATGGCG‑AAAA‑TTGCCCGCGATCTGTTTTGCAGTG‑AGCGTAATGCGCGGGAAGATCGCCTGTTT‑GGCGA‑TG‑CGTTTGCATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTAAAAATAGTCCGAACCGTAGGCCggg > 2:67860/1‑249 (MQ=255) ggtgaaaaaggCCCGAGATCTGTTTTGCTGTG‑AGGGTAAGGCGGGGGAAGAGCGACTTTTG‑GGCGA‑TG‑CTTTTGATTTTATC‑TGAGAAATAAAAAAGCCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCGACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTAcg < 1:189945/241‑1 (MQ=25) aa‑TTGCCCGCGATCTGTTTTGCAGTG‑AGCGTAATGCGCGGGAAGATCGCCTGTTT‑GGCGA‑TG‑CGTTTGCATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAAAAGTCCGAACCGGAGGCCGGGAAAGGCGTTTACGCCGCAt > 2:241630/1‑251 (MQ=255) gCCCGCGATCTTTTTTGCAGTG‑AGCGTAATGCGCGGGAAGATCGCTTGTTT‑GGCGA‑TG‑TGTTTGCATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCg < 1:387813/250‑1 (MQ=255) gcgATCTGTTTTGCAGTG‑AGCGTAATGCGCGGGAAGATCGCCTGTTT‑GGCGA‑TG‑CGTTTGCATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAAAGGCAACTAAACTGTTAATCAGTGGCATTTAGATCTATGAAGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGCGCCTACAAAAAGTCCGAACCGTAGGCCGGATAAGGCGGTTACGCCGCCTCCGGCaac > 1:400072/1‑250 (MQ=255) gATCTGTTTTGCAGTG‑AGCGTAATGCGCGGGAAGATCGCCTGTTT‑GGCGA‑TG‑CGTTTGCATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATTTATGACGTATCTGGCAAACCATGCCCGCTGCGACGCTGTCGCGTCTTATCGTGGCTACAAATAGACCGAACCGGAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTg > 1:317877/1‑251 (MQ=255) g‑AGCGTAATGCGCGGGAAGATCCCCTGTTG‑GGCGAGTG‑‑GTTTGTATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGa < 2:284700/251‑1 (MQ=255) aaTGCGCGGAAAGATCGCTTTTTT‑GCCTA‑TG‑CTTTTGCATTTACC‑TGAAAAAAAAAAAACCCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGAc < 2:68709/251‑1 (MQ=25) aggcgcGGGAAGATCGCTTGTTT‑GGCGT‑TG‑CTTTTGCTTTTATC‑GGAGATAAAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACg < 1:157689/249‑1 (MQ=25) gAAGATCGCCTGTTT‑GGCGA‑TG‑CGTTTGCATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTcgcg > 1:288807/1‑251 (MQ=255) aTCGCCTGTTT‑GGCGA‑TG‑CGTTTGCATTTATC‑TGCGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCACTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGACCCGTAGGCCGGGTAAGGCGTTTACTCCCCATCCGGCAATTGGTGCATGCTGCCTGATGCGACGCTGTCGCGTCtt > 2:337418/1‑251 (MQ=37) cTGTTT‑GGCGA‑TG‑CGTTTGCATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGGACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGGTTACGCCGCATCCCGCCATTGGTGCATGATGCCTGATGCGACGCCGTCGCGTCTTTTCGt > 2:131473/1‑251 (MQ=255) tt‑GGCGA‑TG‑GGTTTGCTTTTATC‑TGAGATAAAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGcc < 1:303689/250‑1 (MQ=255) ggCGA‑TG‑GTTTTGCTTTTATC‑TGAAATAAAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTAc < 1:311235/251‑1 (MQ=255) gA‑TG‑CGCTTGCATTTATC‑TGAGATCTAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGGACCCTAACTGTTATTCAGGGGAATTTAGATCTATGACGTATCTGGCAAACCCTGACCCATGCGGCTCCGCCGCGTCTTATCCTCCCCTCAAATAATCCGAACCGCAAGCCGGCCAAGGCGTTTTCGCCGCAACCGGCATTTGGGGCCTCATTCCTGATGCGGCGCTCCCGCGCCCTGTCGTGCCTACaa > 2:338060/1‑250 (MQ=255) g‑CGTGTGCTTTTCTC‑TGAGATAAAAAAAACCCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTGACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATa < 1:366698/250‑1 (MQ=255) gCATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGa > 1:64105/1‑250 (MQ=255) ttATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGGGCATGATGCCTGATGCGACGCCGTCGCGTATTATCGTGCCTACAAATAGTCCGAACCGt > 1:42907/1‑251 (MQ=255) agtcgggagaataAAAAACCCCGCCCCAGACAGGCGAG‑AAGATCGGCAACTAAACTGTTATTAAGTGGAAGTGAGTTCTATGAAGATTCGGGCAAACCAGGCCCGATTCGACGATGTCGCGTCTTATCGTGCCGACAAATATTCCGAACAGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTTCAAATAGTCCGAACCGt < 2:251573/240‑1 (MQ=18) gagaTATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTc > 1:429657/1‑211 (MQ=255) atatAAAAAACCCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGAt < 1:91014/251‑1 (MQ=255) tataAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAAACGTAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAATTGGGGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGGCCGAACCGtcgggcgg > 2:398829/1‑241 (MQ=255) | GAGGCGCTTTCGTTGAAGCATCCTGGTCTGCAAGTGGTGCCGGTGGTTGAACAACCGGAAGCGGGCTGGCGTGGG‑CGTACTGGCACCGTGTTAACGGCGGTATTGCAGGATCACGGTACGCTGGCAGAGCATGATATCTATATTGCCGGACGTTTTGAGATGGCG‑AAAA‑TTGCCCGCGATCTGTTTTGCAGTG‑AGCGTAATGCGCGGGAAGATCGCCTGTTT‑GGCGA‑TG‑CGTTTGCATTTATC‑TGAGATATAAAAAAACCCGCCCCTGACAGGCGGG‑AAGAACGGCAACTAAACTGTTATTCAGTGGCATTTAGATCTATGACGTATCTGGCAAACCATGCCCGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATTGGTGCATGATGCCTGATGCGACGCTGTCGCGTCTTATCGTGCCTACAAATAGTCCGAACCGTAGGCCGGAT > NC_000913/4026983‑4027480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |